View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_high_71 (Length: 264)
Name: NF1250_high_71
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_high_71 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 1503694 - 1503455
Alignment:
| Q |
1 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaatcataaaagagattctgtcacatatttgcatcatcttc---a |
97 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1503694 |
aatataaggttgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaatcataaaagagattctgtcacatatttgcatcatcttcttca |
1503595 |
T |
|
| Q |
98 |
atttggct-actataatcaatggatatccaaagtcaagcataatttcatatcccttgattaccaaggatttcgaaaagagacaaagttgtctattgctac |
196 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1503594 |
atttggcttactataatcaatggatatccaaagtcaagcataattt-atatcccttgattaccaaggatttcgaaaagagacaaagttgtctattgctac |
1503496 |
T |
|
| Q |
197 |
cgaaaagcaaacatgcttaaactttataaatataaattttg |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
1503495 |
cgaaaagcaaacatgcttaaactttataaatataaattttg |
1503455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 3009382 - 3009237
Alignment:
| Q |
1 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattc-aatcataaaagagattctgtcacatatttgc---atcatcttc |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||| ||||| | |||| | ||| ||||| |
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| T |
3009382 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgtaattcaaaacatagaagagattatgtcagagatttccattatcttcttc |
3009283 |
T |
|
| Q |
97 |
aatttggctactataatcaatggatatccaaagtcaagcataatttcata |
146 |
Q |
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|||||||||||||| |||||||||||| |||| ||||| |||||||| |
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| T |
3009282 |
aatttggctactat----aatggatatccatagtccagcattatttcata |
3009237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 2933392 - 2933498
Alignment:
| Q |
2 |
atataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaatcataaaagagattctgtcacatatttgcatcatcttcaattt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||| ||||| | ||||| ||||||| ||||| |
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| T |
2933392 |
atataaggctgagcagtaacaagaaacacactcttgaaaccaatacctgaaattcaaccataggaaagattatgtcaaagatttgtatcatctaaaattt |
2933491 |
T |
|
| Q |
102 |
ggctact |
108 |
Q |
| |
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||||||| |
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| T |
2933492 |
ggctact |
2933498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 2950026 - 2950083
Alignment:
| Q |
1 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaa |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2950026 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaa |
2950083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 2924029 - 2924103
Alignment:
| Q |
4 |
ataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaatcataaaagagattctgtca |
78 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| | ||||||||||| |
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|
| T |
2924029 |
ataaggctgagccgtaaccagaaacacactcttgaaaccaattcctgaaattcaaccatagcaaagattctgtca |
2924103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 37798893 - 37798946
Alignment:
| Q |
17 |
gtaacaagaaacacactcttgaaaccaattcctgaaattcaatcataaaagaga |
70 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
37798893 |
gtaaccagaaacacactcttgaaaccaattcctgaaattcaaccatataagaga |
37798946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4913496 - 4913439
Alignment:
| Q |
1 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaa |
58 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4913496 |
aatataaggctgagcagtaaccagaaacacactcttgaaaccaattcctgaaattcaa |
4913439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 28027577 - 28027687
Alignment:
| Q |
1 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaatcataaaagagattctgtcacatatttg---catcatcttca |
97 |
Q |
| |
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|||||| ||||||||| |||| ||||||||||||||||| || ||||||||||||||| ||||| ||||||||||||| | ||||| |||||||||| |
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| T |
28027577 |
aatatatggctgagcactaaccagaaacacactcttgaatccgattcctgaaattcaaccataagagagattctgtcaaagatttgtgttatcatcttca |
28027676 |
T |
|
| Q |
98 |
atttggctact |
108 |
Q |
| |
|
|||||| |||| |
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|
| T |
28027677 |
atttggttact |
28027687 |
T |
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