View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_high_82 (Length: 251)
Name: NF1250_high_82
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_high_82 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 31520336 - 31520484
Alignment:
| Q |
1 |
ctataatttgtaacacacatggatcgaattaattagtagatgatgctaaggggtagattagtttgcttgttgtgaaaatttcaacggaaaagagacaaca |
100 |
Q |
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| T |
31520336 |
ctataatttgtaacacacatggatcgaattaattagtagatgatgctaaggggtagattagtttgtttgttgtgaaaatttcaacggaaaagagacaaca |
31520435 |
T |
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| Q |
101 |
atcgaatcaagagctaaaagcatggtgtgtttggtgggaatatattata |
149 |
Q |
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| T |
31520436 |
atcgaatcaagagctaaaagcatggtgtgtttggtgggaatatattata |
31520484 |
T |
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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 31520985 - 31521069
Alignment:
| Q |
148 |
tacttgtattttaaaaataagtacaaaaatcaaatgataccggatttaacattattactcgtagaaaatccatttctctaatttt |
232 |
Q |
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|||| |||||||||||||||| ||||||||||||||| ||||||||| |||| |||||| ||||||||||||||||||||||||| |
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| T |
31520985 |
tactcgtattttaaaaataagcacaaaaatcaaatgacaccggatttgacatcattacttgtagaaaatccatttctctaatttt |
31521069 |
T |
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