View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_high_9 (Length: 585)
Name: NF1250_high_9
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 8 - 472
Target Start/End: Original strand, 18829372 - 18829836
Alignment:
| Q |
8 |
aaacaaaggcaattgaagtacacgagccaaagccaacccaaaaacccaaaaatttcattaagcaaaggatcacaaacccaagtagtaagggttcttcaac |
107 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18829372 |
aaacaaaagcaattcaagtacacgagccaaagccaacccaaaaacccaaaaaattcattaagcaaaggatcacaaacccaagtagtaagggttcttcaac |
18829471 |
T |
|
| Q |
108 |
tacaacttcaggtgaaggatatggcgccgtttgtagcatcgatgatagcgatgatttctccacaacaacgttctcggatgttagcacaacaaacaactac |
207 |
Q |
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| T |
18829472 |
tacaacttcaggtgaaggatatggcgccgtttgtagcatcgatgatagcgatgatttctccaccacgacgttctcggatgttagcacaacaaacaactac |
18829571 |
T |
|
| Q |
208 |
tctgcacccaaacaaagcccactaatgaacacggtggcggtagagaaggattctgaggatccgtatcatgatttcaaacattctatgcttcaaatgatct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18829572 |
tctgcacccaaacaaagcccactaatgaacacggtggcggtagagaaggattctgaggatccgtatcatgatttcaaacattctatgcttcaaatgatct |
18829671 |
T |
|
| Q |
308 |
tcgagaatgagatcgattcagaagacgatcttcaagatcttctccggtgttttcttcatctcaattctagttgttatcatggtgttatcgtaaaagtctt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18829672 |
tcgagaatgagatcgattcagaagacgatcttcaagatcttctccggtgttttcttcatctcaattctagttgttatcatggtgttatcgtaaaagtctt |
18829771 |
T |
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| Q |
408 |
caatgatatatgtcatgaagctttccccgacaaggttggtagcactactataaaaccttccgggt |
472 |
Q |
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| T |
18829772 |
caatgatatatgtcatgaagctttccccgacaaggttggtagcactactataaaaccttccgggt |
18829836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 109 - 431
Target Start/End: Complemental strand, 18837912 - 18837590
Alignment:
| Q |
109 |
acaacttcaggtgaaggatatggcgccgtttgtagcatcgatgatagcgatgatttctccacaacaacgttctcggatgttagcacaacaaacaactact |
208 |
Q |
| |
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||||||| ||||||| || | || |||| ||||||| ||||| | ||||| ||||||||||| || || ||||| || | | || ||| | ||||||| |
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| T |
18837912 |
acaactttaggtgaacgaaagggtgccggttgtagcgtcgatcacagcgacgatttctccaccaccactttctctgaagctgaaactacacaaaactact |
18837813 |
T |
|
| Q |
209 |
ctgcacccaaacaaagcccactaatgaacacggtggcggtagagaaggattctgaggatccgtatcatgatttcaaacattctatgcttcaaatgatctt |
308 |
Q |
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|| ||| ||| || ||||||||| ||||| |||| || || ||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
18837812 |
ctccacacaagcatagcccactatcaaacactgtggtcgttgaaaaggattctgataatccatatcatgatttcaaacactctatgcttcaaatgatctt |
18837713 |
T |
|
| Q |
309 |
cgagaatgagatcgattcagaagacgatcttcaagatcttctccggtgttttcttcatctcaattctagttgttatcatggtgttatcgtaaaagtcttc |
408 |
Q |
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|||| ||||||||||||| || || ||||||| || |||||| ||||||||||||||||||||| || ||||||||| ||| ||||| |||||||| |
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| T |
18837712 |
cgaggatgagatcgattcggaggatgatcttcgagttcttcttcggtgttttcttcatctcaatgatacttgttatcaccttgtcatcgttaaagtcttt |
18837613 |
T |
|
| Q |
409 |
aatgatatatgtcatgaagcttt |
431 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
18837612 |
aatgatatatgtcatgaagcttt |
18837590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 42945882 - 42945806
Alignment:
| Q |
241 |
gtggcggtagagaaggattctgaggatccgtatcatgatttcaaacattctatgcttcaaatgatcttcgagaatga |
317 |
Q |
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|||||||| ||||| |||||||| ||||| |||| |||||||| ||||| |||||||||||||| || |||||||| |
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| T |
42945882 |
gtggcggtggagaaagattctgaagatccttatcttgatttcaggcattccatgcttcaaatgatattggagaatga |
42945806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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