View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_1 (Length: 715)
Name: NF1250_low_1
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 25 - 473
Target Start/End: Complemental strand, 43578432 - 43577984
Alignment:
| Q |
25 |
aagaatatcaatgttgtctacataaaagtgtcttgttcaaagatatgaaaaataataaatcacataattcttgttaactcaagacaattcagtcatccgt |
124 |
Q |
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| T |
43578432 |
aagaaaatcaatgttgtctacataaaagtgtcttgtccgaagatatgagaaataataaatcacataattcttgttaactcaagacaattcagtcatccgt |
43578333 |
T |
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| Q |
125 |
ttcttaacctcaccaatgagcaagatcataattcttaaaaaccaaagcaaccaattgataatctatttccaaccaaagagagattcatccctttttcgaa |
224 |
Q |
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| T |
43578332 |
ttcttaacctcaccaatgagcaagatcataattcttaaaaaccaaagcaaccaattgataatctatttccaaccaaagagagattcatccctttttcgaa |
43578233 |
T |
|
| Q |
225 |
gctatctcaattgcatacctagctcaattaactctgcatagaaagcagtaaacacatttaaatttttagcaaaacaacctacaacaacgttgttatctct |
324 |
Q |
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| T |
43578232 |
gctatctcaattgcatacctggctcaattaactctgcatagaaagcagtaaacacatttaaatttttagcaaaacaacctacaacaacgttgttatctct |
43578133 |
T |
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| Q |
325 |
aaaaataccaacactagcatctgatctaagacaaccttttgttgtgttgtcaatattgcatttgatccaagagaaaatagaaggatggtatatataacct |
424 |
Q |
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| T |
43578132 |
aaaaataccaacactagcatctgatctaagacaatcttttgttgtgttgtcaatattgcatttgatccaagagaaaatagaaggatggtatatataacct |
43578033 |
T |
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| Q |
425 |
actgttatcgactaaaatgaatgttttttaacgaaaacgcaaaaacttt |
473 |
Q |
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| T |
43578032 |
actgttaccgactaaaatgaatgttttttaaagaaaacgcaaaaacttt |
43577984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 471 - 648
Target Start/End: Complemental strand, 43577864 - 43577687
Alignment:
| Q |
471 |
tttgagtctcgcagtaggccctttgtaatttgtacagtatatgtaggtgacgagtcacgagagtaacaatcagacaaacttgattagtaagagacgacta |
570 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43577864 |
tttgagtctcgcagtaggccctttgtaatttgtacagtatatgtaggtgacgagtcacgagagtaacaatcagacaaatttgattagtaagagacgacta |
43577765 |
T |
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| Q |
571 |
ggaccttattctagtttctaggattaagtggacccttaaagaaaatgatttagttgatttggtttctgaaagcgaaag |
648 |
Q |
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| T |
43577764 |
gaaccttattctagtttctaggattaagtggacccttaaagaaaatgatttagttgatttggtttctgaaagcgaaag |
43577687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 8859799 - 8859712
Alignment:
| Q |
151 |
cataattcttaaaaaccaaagcaaccaattgataatctatttccaaccaaagagagattcatcc-ctttttcgaagctatctcaattg |
237 |
Q |
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|||||||||| ||| | |||| |||||||||| ||| | |||| ||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
8859799 |
cataattctttaaagcaaaagtaaccaattgagaatttgtttcaaaccaaagagagattcaaccatttttttaaagctatctcaattg |
8859712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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