View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_100 (Length: 257)
Name: NF1250_low_100
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_100 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 29 - 257
Target Start/End: Original strand, 3215689 - 3215917
Alignment:
| Q |
29 |
agggttgacatgtccagcaccagtggcaaataaatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaacttcataagcagttgtc |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215689 |
agggttgacatgtccagcaccagtggcaaataaatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaacttcataagcagttgtc |
3215788 |
T |
|
| Q |
129 |
atgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattgaggtacctg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3215789 |
atgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccactgagatgtggacaagacattgaggtacctg |
3215888 |
T |
|
| Q |
229 |
aaatgatgttgtatggtggtatattgttg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
3215889 |
aaatgatgttgtatggtggtatattgttg |
3215917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 31 - 226
Target Start/End: Original strand, 3219197 - 3219392
Alignment:
| Q |
31 |
ggttgacatgtccagcaccagtggcaaataaatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaacttcataagcagttgtcat |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3219197 |
ggttgacatatccagcaccagtggcaaataaatcagctggtttaagcctttggtctaaaatagcttttccttgaagattaaactcataagcagttgtcat |
3219296 |
T |
|
| Q |
131 |
gattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattgaggtacc |
226 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |||||||| ||||||| |||||||||||||||||| |
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| T |
3219297 |
gattgctgattttatagcagcgggagaccgatctggatgagaatttttcaacagtgctgcaattccattgagatgaaaacaagacattgaggtacc |
3219392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 29 - 238
Target Start/End: Original strand, 3207753 - 3207962
Alignment:
| Q |
29 |
agggttgacatgtccagcaccagtggcaaataaatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaacttcataagcagttgtc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| || |||||||||||||| | || |||||||||| |
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|
| T |
3207753 |
agggttgacatgtccagcaccagtggcaaatacatcagctggtagaattctttggtccaaaataggcttaccttgaagattaacctgattagcagttgtc |
3207852 |
T |
|
| Q |
129 |
atgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattgaggtacctg |
228 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || || ||||| ||||| |||||||||||||||| |
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|
| T |
3207853 |
atgattgcggattttatagcagctggagaccaatctggatgagagtttttcaacaaagcagcaatgccactaagatgaggacatgacattgaggtacctg |
3207952 |
T |
|
| Q |
229 |
aaatgatgtt |
238 |
Q |
| |
|
|||| ||||| |
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| T |
3207953 |
aaattatgtt |
3207962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 29 - 238
Target Start/End: Original strand, 3201779 - 3201988
Alignment:
| Q |
29 |
agggttgacatgtccagcaccagtggcaaataaatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaacttcataagcagttgtc |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| || || || |||||||| | || |||||| ||| |
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| T |
3201779 |
agggttaacatgtccagcaccagtggcaaatacatcagctggtagaagcctttggtccaaaataggcttaccatggagattaacatgattagcagtcgtc |
3201878 |
T |
|
| Q |
129 |
atgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattgaggtacctg |
228 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||| ||||||||||||| ||||||||| || || ||||| ||||||||||| |||||||||| |
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| T |
3201879 |
atgattgctgattttatagctgctggtgaccaatctggatgcgagtttttcaacaaagcagcaatgccactaagatgaggacaagacatcgaggtacctg |
3201978 |
T |
|
| Q |
229 |
aaatgatgtt |
238 |
Q |
| |
|
||| ||||| |
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|
| T |
3201979 |
caattatgtt |
3201988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 3224189 - 3224317
Alignment:
| Q |
99 |
ccttgaagattaacttcataagcagttgtcatgattgctgattttatagcagcgggagaccaatctggatgagagtttt-tcaacagagcagcaattccg |
197 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||| | |||||||| |
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| T |
3224189 |
ccttgaagattaacctcatatgcagttgtcatgattgccgattttatagcagacagagaccaatctggatgatagttttatcaacagtactgcaattcca |
3224288 |
T |
|
| Q |
198 |
ctgagatgtggacaagacattgaggtacc |
226 |
Q |
| |
|
|||||||| | |||||||||||||||||| |
|
|
| T |
3224289 |
ctgagatgagaacaagacattgaggtacc |
3224317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 3179109 - 3179008
Alignment:
| Q |
119 |
agcagttgtcatgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||||||| |||||||| |||| | || |||||||| || |||||||| |||||||||||| |
|
|
| T |
3179109 |
agcagttgtcatgattgctgattttattgcagctggcgaccaatcaggatgagaacttttgatcaatgcagcaatgccactgagatgaggacaagacatt |
3179010 |
T |
|
| Q |
219 |
ga |
220 |
Q |
| |
|
|| |
|
|
| T |
3179009 |
ga |
3179008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 3239731 - 3239832
Alignment:
| Q |
119 |
agcagttgtcatgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||||||| |||||||| |||| | || |||||||| || |||||||| |||||||||||| |
|
|
| T |
3239731 |
agcagttgtcatgattgctgattttattgcagctggcgaccaatcaggatgagaacttttgatcaatgcagcaatgccactgagatgaggacaagacatt |
3239830 |
T |
|
| Q |
219 |
ga |
220 |
Q |
| |
|
|| |
|
|
| T |
3239831 |
ga |
3239832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 3230933 - 3231044
Alignment:
| Q |
120 |
gcagttgtcatgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||||||| || ||||| |||| | || |||||||| || || || || ||||||||||||| |
|
|
| T |
3230933 |
gcagttgtcatgattgctgattttatagcggctggcgaccaatcagggtgagaacttttgatcaatgcagcaataccacttaggtgaggacaagacattg |
3231032 |
T |
|
| Q |
220 |
aggtacctgaaa |
231 |
Q |
| |
|
| ||||| |||| |
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|
| T |
3231033 |
aagtaccggaaa |
3231044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 3220700 - 3220811
Alignment:
| Q |
120 |
gcagttgtcatgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||||||| || ||||| |||| | || |||| ||| || || || || ||||||||||||| |
|
|
| T |
3220700 |
gcagttgtcatgattgctgattttatagcggctggtgaccaatcagggtgagaacttttgatcaatgcagaaataccacttaggtgaggacaagacattg |
3220799 |
T |
|
| Q |
220 |
aggtacctgaaa |
231 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
3220800 |
aagtaccggaaa |
3220811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 3225685 - 3225796
Alignment:
| Q |
120 |
gcagttgtcatgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattg |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || |||||||| |||||||| |||| | || |||||||| || || || || ||||||||||| | |
|
|
| T |
3225685 |
gcagttgtcatgattgccgattttatagcggctggtgaccaatcaggatgagaacttttgatcaatgcagcaataccacttaggtgaggacaagacatcg |
3225784 |
T |
|
| Q |
220 |
aggtacctgaaa |
231 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
3225785 |
aagtacccgaaa |
3225796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 46215298 - 46215262
Alignment:
| Q |
115 |
cataagcagttgtcatgattgctgattttatagcagc |
151 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46215298 |
cataagctgttgtcatgattgctgattttatagcagc |
46215262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 139416 - 139467
Alignment:
| Q |
119 |
agcagttgtcatgattgctgattttatagcagcgggagaccaatctggatga |
170 |
Q |
| |
|
||||||||||||||| || ||||||||||| || || ||||||||||||||| |
|
|
| T |
139416 |
agcagttgtcatgatagcggattttatagctgcaggtgaccaatctggatga |
139467 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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