View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_103 (Length: 252)

Name: NF1250_low_103
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_103
NF1250_low_103
[»] chr1 (23 HSPs)
chr1 (203-252)||(4080963-4081012)
chr1 (8-81)||(21631072-21631144)
chr1 (48-84)||(41317590-41317626)
chr1 (80-118)||(4080814-4080852)
chr1 (48-82)||(25227303-25227337)
chr1 (48-81)||(4280130-4280163)
chr1 (48-81)||(5765994-5766027)
chr1 (48-81)||(7763753-7763786)
chr1 (48-81)||(9413329-9413362)
chr1 (48-81)||(17483733-17483766)
chr1 (48-81)||(25509209-25509242)
chr1 (48-81)||(27037269-27037302)
chr1 (48-81)||(27037534-27037567)
chr1 (48-81)||(28885842-28885875)
chr1 (48-81)||(36695119-36695152)
chr1 (48-81)||(36711220-36711253)
chr1 (48-81)||(37850443-37850476)
chr1 (48-81)||(38613740-38613773)
chr1 (48-81)||(39750385-39750418)
chr1 (48-81)||(42276165-42276198)
chr1 (48-81)||(43456625-43456658)
chr1 (48-84)||(23530810-23530846)
chr1 (48-84)||(29437858-29437894)
[»] chr5 (11 HSPs)
chr5 (48-95)||(4976294-4976341)
chr5 (8-81)||(20142224-20142296)
chr5 (48-81)||(21069637-21069670)
chr5 (48-81)||(3028013-3028046)
chr5 (48-81)||(7940452-7940485)
chr5 (48-81)||(8949812-8949845)
chr5 (48-81)||(14435830-14435863)
chr5 (48-81)||(19571943-19571976)
chr5 (48-81)||(23260142-23260175)
chr5 (48-81)||(23286478-23286511)
chr5 (48-81)||(43060415-43060448)
[»] chr6 (13 HSPs)
chr6 (41-83)||(13866591-13866633)
chr6 (48-81)||(402625-402658)
chr6 (48-81)||(2090658-2090691)
chr6 (41-78)||(11104573-11104610)
chr6 (48-81)||(13321330-13321363)
chr6 (48-81)||(13901641-13901674)
chr6 (48-81)||(15498629-15498662)
chr6 (48-81)||(16122518-16122551)
chr6 (48-81)||(23604460-23604493)
chr6 (48-81)||(25045647-25045680)
chr6 (48-81)||(31091445-31091478)
chr6 (48-81)||(34915547-34915580)
chr6 (48-84)||(32614986-32615022)
[»] chr3 (27 HSPs)
chr3 (41-83)||(45513634-45513676)
chr3 (48-84)||(4759085-4759121)
chr3 (48-88)||(24087339-24087379)
chr3 (48-82)||(15996777-15996811)
chr3 (49-82)||(1327603-1327636)
chr3 (48-81)||(1450507-1450540)
chr3 (48-81)||(4759355-4759388)
chr3 (48-81)||(8321925-8321958)
chr3 (48-81)||(10015793-10015826)
chr3 (48-81)||(19897840-19897873)
chr3 (48-81)||(28875255-28875288)
chr3 (45-82)||(31531412-31531449)
chr3 (48-81)||(36099228-36099261)
chr3 (48-81)||(36584710-36584743)
chr3 (48-81)||(41392884-41392917)
chr3 (48-81)||(42801521-42801554)
chr3 (48-81)||(43701178-43701211)
chr3 (48-81)||(46845496-46845529)
chr3 (48-81)||(48909872-48909905)
chr3 (48-81)||(51283802-51283835)
chr3 (48-81)||(53686736-53686769)
chr3 (48-84)||(4024315-4024351)
chr3 (48-84)||(9499501-9499537)
chr3 (49-81)||(12906418-12906450)
chr3 (49-81)||(48904268-48904300)
chr3 (48-84)||(50433125-50433161)
chr3 (48-84)||(50517526-50517562)
[»] chr8 (20 HSPs)
chr8 (8-81)||(18111940-18112012)
chr8 (8-81)||(23688129-23688202)
chr8 (48-88)||(44888673-44888713)
chr8 (11-81)||(12802611-12802679)
chr8 (48-83)||(30512766-30512801)
chr8 (46-81)||(45283794-45283829)
chr8 (48-82)||(17069848-17069882)
chr8 (48-82)||(17578391-17578425)
chr8 (47-81)||(32475230-32475264)
chr8 (48-81)||(2152244-2152277)
chr8 (48-81)||(5162304-5162337)
chr8 (48-81)||(6050559-6050592)
chr8 (48-81)||(11798605-11798638)
chr8 (48-81)||(18111716-18111749)
chr8 (48-81)||(18641384-18641417)
chr8 (48-81)||(23487064-23487097)
chr8 (48-81)||(38967141-38967174)
chr8 (48-81)||(45260223-45260256)
chr8 (48-84)||(12824943-12824979)
chr8 (49-81)||(44580616-44580648)
[»] chr7 (12 HSPs)
chr7 (48-85)||(31581673-31581710)
chr7 (48-83)||(32118167-32118202)
chr7 (48-81)||(2290020-2290053)
chr7 (48-81)||(9140272-9140305)
chr7 (48-81)||(27813496-27813529)
chr7 (48-81)||(33381577-33381610)
chr7 (48-81)||(34012521-34012554)
chr7 (49-81)||(1574719-1574751)
chr7 (45-81)||(7400129-7400165)
chr7 (48-84)||(41026100-41026136)
chr7 (49-81)||(42541864-42541896)
chr7 (48-84)||(43093413-43093449)
[»] chr2 (23 HSPs)
chr2 (48-89)||(12890212-12890253)
chr2 (48-81)||(18970733-18970766)
chr2 (45-84)||(25523761-25523800)
chr2 (48-83)||(28566149-28566184)
chr2 (48-82)||(2060315-2060349)
chr2 (48-81)||(2200244-2200277)
chr2 (48-81)||(3095299-3095332)
chr2 (48-81)||(7116303-7116336)
chr2 (48-81)||(8912878-8912911)
chr2 (48-81)||(11201947-11201980)
chr2 (48-81)||(18374708-18374741)
chr2 (48-81)||(21220989-21221022)
chr2 (48-81)||(24345682-24345715)
chr2 (48-81)||(26322297-26322330)
chr2 (48-81)||(31751069-31751102)
chr2 (48-81)||(41422512-41422545)
chr2 (48-81)||(41494626-41494659)
chr2 (49-81)||(2199978-2200010)
chr2 (48-84)||(7492108-7492144)
chr2 (48-88)||(11201676-11201716)
chr2 (49-81)||(13215825-13215857)
chr2 (49-81)||(23083515-23083547)
chr2 (48-84)||(36750888-36750924)
[»] scaffold0237 (1 HSPs)
scaffold0237 (45-81)||(6610-6646)
[»] scaffold0240 (2 HSPs)
scaffold0240 (48-83)||(18760-18795)
scaffold0240 (48-81)||(18497-18530)
[»] chr4 (24 HSPs)
chr4 (48-83)||(25124250-25124285)
chr4 (48-83)||(31937074-31937109)
chr4 (41-88)||(54878012-54878059)
chr4 (48-86)||(49373697-49373735)
chr4 (48-81)||(4415965-4415998)
chr4 (48-81)||(6807429-6807462)
chr4 (48-81)||(7698473-7698506)
chr4 (48-81)||(18872717-18872750)
chr4 (48-81)||(20455185-20455218)
chr4 (48-81)||(24154187-24154220)
chr4 (48-81)||(28495380-28495413)
chr4 (48-81)||(28501390-28501423)
chr4 (48-81)||(29520168-29520201)
chr4 (48-81)||(32899222-32899255)
chr4 (48-81)||(39670990-39671023)
chr4 (48-81)||(46949992-46950025)
chr4 (48-81)||(49793091-49793124)
chr4 (48-81)||(53564360-53564393)
chr4 (48-81)||(55563131-55563164)
chr4 (48-81)||(56432518-56432551)
chr4 (45-81)||(625967-626003)
chr4 (49-81)||(21265220-21265252)
chr4 (49-81)||(30523764-30523796)
chr4 (50-78)||(30783678-30783706)
[»] scaffold0674 (1 HSPs)
scaffold0674 (48-81)||(5151-5184)
[»] scaffold0549 (1 HSPs)
scaffold0549 (48-81)||(10186-10219)
[»] scaffold0250 (1 HSPs)
scaffold0250 (48-81)||(9166-9199)
[»] scaffold0163 (1 HSPs)
scaffold0163 (48-81)||(1450-1483)
[»] scaffold0161 (1 HSPs)
scaffold0161 (48-81)||(3438-3471)
[»] scaffold0107 (1 HSPs)
scaffold0107 (48-81)||(48654-48687)
[»] scaffold0039 (1 HSPs)
scaffold0039 (48-81)||(93785-93818)
[»] scaffold0020 (1 HSPs)
scaffold0020 (48-81)||(164214-164247)


Alignment Details
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 4080963 - 4081012
Alignment:
Q  203 gttcaacaattttgtttctaatgactcttctccttttaaaattcacattc 252  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4080963 gttccacaattttgtttctaatgactcttctccttttaaaattcacattc 4081012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 21631072 - 21631144
Alignment:
Q  8 tagcataggggtcttataaaaagggnnnnnnnntttcttccaaaagggtcttataattagggacagaggtagta 81  Q
    ||||| |||||||||||||||||||        ||||||| ||||||||||||||||||||||| |||||||||    
T  21631072 tagcaaaggggtcttataaaaagggacaatttgtttcttc-aaaagggtcttataattagggacggaggtagta 21631144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 41317626 - 41317590
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    |||||||||||||||||||||||| ||||||||||||    
T  41317626 caaaagggtcttataattagggacggaggtagtactt 41317590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 4080814 - 4080852
Alignment:
Q  80 tacttaataaactaaatccactactgtcaccgtatcatc 118  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  4080814 tacttaataaactaaatccactactgtccccgcatcatc 4080852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 25227337 - 25227303
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtac 82  Q
    |||||||||||||||||||||||| ||||||||||    
T  25227337 caaaagggtcttataattagggacggaggtagtac 25227303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 4280130 - 4280163
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  4280130 caaaagggtcttataattagggacggaggtagta 4280163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 5765994 - 5766027
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  5765994 caaaagggtcttataattagggacggaggtagta 5766027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 7763753 - 7763786
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  7763753 caaaagggtcttataattagggacggaggtagta 7763786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 9413329 - 9413362
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  9413329 caaaagggtcttataattagggacggaggtagta 9413362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 17483766 - 17483733
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  17483766 caaaagggtcttataattagggacggaggtagta 17483733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 25509242 - 25509209
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  25509242 caaaagggtcttataattagggacggaggtagta 25509209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 27037302 - 27037269
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  27037302 caaaagggtcttataattagggacggaggtagta 27037269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 27037534 - 27037567
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  27037534 caaaagggtcttataattagggacggaggtagta 27037567  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 28885875 - 28885842
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  28885875 caaaagggtcttataattagggacggaggtagta 28885842  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 36695119 - 36695152
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||||| ||||    
T  36695119 caaaagggtcttataattagggacagagggagta 36695152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 36711220 - 36711253
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||||| ||||    
T  36711220 caaaagggtcttataattagggacagagggagta 36711253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 37850443 - 37850476
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||| ||||||||||||||||||||||||||    
T  37850443 caaaaggatcttataattagggacagaggtagta 37850476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 38613740 - 38613773
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  38613740 caaaagggtcttataattagggacggaggtagta 38613773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 39750385 - 39750418
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||||| ||||    
T  39750385 caaaagggtcttataattagggacagagggagta 39750418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 42276165 - 42276198
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  42276165 caaaagggtcttataattagggacggaggtagta 42276198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 43456625 - 43456658
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  43456625 caaaagggtcttataattagggacggaggtagta 43456658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 23530810 - 23530846
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  23530810 caaaagggccttataattagggacggaggtagtactt 23530846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 29437858 - 29437894
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  29437858 caaaagagtcttataattagggacggaggtagtactt 29437894  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 4976294 - 4976341
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtacttaataaactaaa 95  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  4976294 caaaagggtcttataattagggacggaggtagtactaaataaactaaa 4976341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 20142224 - 20142296
Alignment:
Q  8 tagcataggggtcttataaaaagggnnnnnnnntttcttccaaaagggtcttataattagggacagaggtagta 81  Q
    ||||| |||||||||||||||||||        ||| ||||||||||||||||||||||||||| |||||||||    
T  20142224 tagcaaaggggtcttataaaaagggacaattttttt-ttccaaaagggtcttataattagggacggaggtagta 20142296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 21069670 - 21069637
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||||||||||    
T  21069670 caaaagggtcttataattagggacagaggtagta 21069637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 3028046 - 3028013
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  3028046 caaaagggtcttataattagggacggaggtagta 3028013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 7940485 - 7940452
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  7940485 caaaagggtcttataattagggacggaggtagta 7940452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 8949845 - 8949812
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  8949845 caaaagggtcttataattagggacggaggtagta 8949812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 14435863 - 14435830
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  14435863 caaaagggtcttataattagggacggaggtagta 14435830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 19571943 - 19571976
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  19571943 caaaagggtcttataattagggacggaggtagta 19571976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 23260142 - 23260175
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  23260142 caaaagggtcttataattagggacggaggtagta 23260175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 23286478 - 23286511
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  23286478 caaaagggtcttataattagggacggaggtagta 23286511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 43060415 - 43060448
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  43060415 caaaagggtcttataattagggacggaggtagta 43060448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 13866633 - 13866591
Alignment:
Q  41 tttcttccaaaagggtcttataattagggacagaggtagtact 83  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  13866633 tttcttccaaaagggtcttataattagggacggaggtagtact 13866591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 402625 - 402658
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  402625 caaaagggtcttataattagggacggaggtagta 402658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 2090691 - 2090658
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  2090691 caaaagggtcttataattagggacggaggtagta 2090658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 11104610 - 11104573
Alignment:
Q  41 tttcttccaaaagggtcttataattagggacagaggta 78  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  11104610 tttcttccaaaaggatcttataattagggacaaaggta 11104573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 13321330 - 13321363
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  13321330 caaaagggtcttataattagggacggaggtagta 13321363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 13901674 - 13901641
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  13901674 caaaagggtcttataattagggacggaggtagta 13901641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 15498662 - 15498629
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  15498662 caaaagggtcttataattagggacggaggtagta 15498629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 16122518 - 16122551
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  16122518 caaaagggtcttataattagggacggaggtagta 16122551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 23604493 - 23604460
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  23604493 caaaagggtcttataattagggacggaggtagta 23604460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 25045647 - 25045680
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  25045647 caaaagggtcttataattagggacggaggtagta 25045680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 31091478 - 31091445
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  31091478 caaaagggtcttataattagggacggaggtagta 31091445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 34915547 - 34915580
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  34915547 caaaagggtcttataattagggacggaggtagta 34915580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 32615022 - 32614986
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  32615022 caaaaggttcttataattagggacggaggtagtactt 32614986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 45513634 - 45513676
Alignment:
Q  41 tttcttccaaaagggtcttataattagggacagaggtagtact 83  Q
    |||||| |||||||||||||||||||||||| |||||||||||    
T  45513634 tttctttcaaaagggtcttataattagggacggaggtagtact 45513676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 4759121 - 4759085
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4759121 caaaagggtcttataattagggacggaggtagtactt 4759085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 24087339 - 24087379
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtacttaata 88  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  24087339 caaaagggtcttataattagggacggaggtagtatttaata 24087379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 15996777 - 15996811
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtac 82  Q
    |||||||||||||||||||||||| ||||||||||    
T  15996777 caaaagggtcttataattagggacggaggtagtac 15996811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 1327636 - 1327603
Alignment:
Q  49 aaaagggtcttataattagggacagaggtagtac 82  Q
    ||||||||||||||||||||||| ||||||||||    
T  1327636 aaaagggtcttataattagggactgaggtagtac 1327603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 1450507 - 1450540
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||| ||||||    
T  1450507 caaaagggtcttataattagggacagatgtagta 1450540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 4759355 - 4759388
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  4759355 caaaagggtcttataattagggacggaggtagta 4759388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 8321958 - 8321925
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  8321958 caaaagggtcttataattagggacggaggtagta 8321925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 10015793 - 10015826
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  10015793 caaaagggtcttataattagggacggaggtagta 10015826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 19897840 - 19897873
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  19897840 caaaagggtcttataattagggacggaggtagta 19897873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 28875255 - 28875288
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  28875255 caaaagggtcttataattagggacggaggtagta 28875288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 31531412 - 31531449
Alignment:
Q  45 ttccaaaagggtcttataattagggacagaggtagtac 82  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  31531412 ttccaaaagggtcttataattagggacggagggagtac 31531449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 36099228 - 36099261
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||||| ||||    
T  36099228 caaaagggtcttataattagggacagagggagta 36099261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 36584743 - 36584710
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||| |||||||||||||||||||||||||||    
T  36584743 caaaagagtcttataattagggacagaggtagta 36584710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 41392884 - 41392917
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  41392884 caaaagggtcttataattagggacggaggtagta 41392917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 42801554 - 42801521
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  42801554 caaaagggtcttataattagggacggaggtagta 42801521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 43701211 - 43701178
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||||| ||||    
T  43701211 caaaagggtcttataattagggacagagggagta 43701178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 46845496 - 46845529
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  46845496 caaaagggtcttataattagggacggaggtagta 46845529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 48909905 - 48909872
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  48909905 caaaagggtcttataattagggactgaggtagta 48909872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 51283835 - 51283802
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||||| ||||    
T  51283835 caaaagggtcttataattagggacagagggagta 51283802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 53686769 - 53686736
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||| ||||||||||||||||||||||||    
T  53686769 caaaagggttttataattagggacagaggtagta 53686736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 4024315 - 4024351
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    |||||||||||||||||||||||| |||| |||||||    
T  4024315 caaaagggtcttataattagggacggagggagtactt 4024351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 9499501 - 9499537
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    |||||||||||||||||||||||| |||| |||||||    
T  9499501 caaaagggtcttataattagggacggagggagtactt 9499537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 12906418 - 12906450
Alignment:
Q  49 aaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||| |||||||||    
T  12906418 aaaagggtcttataattagggacggaggtagta 12906450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 48904268 - 48904300
Alignment:
Q  49 aaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||| |||||||||    
T  48904268 aaaagggtcttataattagggacggaggtagta 48904300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 50433161 - 50433125
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  50433161 caaaagggccttataattagggacggaggtagtactt 50433125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 50517526 - 50517562
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  50517526 caaaaggatcttataattagggacggaggtagtactt 50517562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 18111940 - 18112012
Alignment:
Q  8 tagcataggggtcttataaaaagggnnnnnnnntttcttccaaaagggtcttataattagggacagaggtagta 81  Q
    ||||| |||||||||||||||||||        ||| ||||||||||||||||||||||||||| |||||||||    
T  18111940 tagcaaaggggtcttataaaaagggacaattttttt-ttccaaaagggtcttataattagggacggaggtagta 18112012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 23688129 - 23688202
Alignment:
Q  8 tagcataggggtcttataaaaagggnnnnnnnntttcttccaaaagggtcttataattagggacagaggtagta 81  Q
    ||||| |||||||||||||||||||        ||| || |||||||||||||||||||||||| |||||||||    
T  23688129 tagcaaaggggtcttataaaaagggacaatttttttttttcaaaagggtcttataattagggacggaggtagta 23688202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 44888713 - 44888673
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtacttaata 88  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  44888713 caaaagggtcttataattagggacggaggtagtagttaata 44888673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 12802679 - 12802611
Alignment:
Q  11 cataggggtcttataaaaagggnnnnnnnntttcttccaaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||        |||||  |||||||||||||||||||||||| |||||||||    
T  12802679 cataggggtcttataaaaagggataaattttttct--caaaagggtcttataattagggacggaggtagta 12802611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 30512801 - 30512766
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtact 83  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30512801 caaaagggtcttatagttagggacagaggtagtact 30512766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 45283794 - 45283829
Alignment:
Q  46 tccaaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||||| |||||||||    
T  45283794 tccaaaagggtcttataattagggacggaggtagta 45283829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 17069848 - 17069882
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtac 82  Q
    |||||||||||||||||||||||| ||||||||||    
T  17069848 caaaagggtcttataattagggacggaggtagtac 17069882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 17578425 - 17578391
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtac 82  Q
    |||||||||||||||||||||||| ||||||||||    
T  17578425 caaaagggtcttataattagggacggaggtagtac 17578391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 32475230 - 32475264
Alignment:
Q  47 ccaaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||||||||| ||||    
T  32475230 ccaaaagggtcttataattagggacagagggagta 32475264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 2152244 - 2152277
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  2152244 caaaagggtcttataattagggacggaggtagta 2152277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 5162337 - 5162304
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  5162337 caaaagggtcttataattagggacggaggtagta 5162304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 6050559 - 6050592
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  6050559 caaaagggtcttataattagggacggaggtagta 6050592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 11798638 - 11798605
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||||| ||||    
T  11798638 caaaagggtcttataattagggacagagggagta 11798605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 18111749 - 18111716
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||| |||||||||||||||||||||||    
T  18111749 caaaagggtcctataattagggacagaggtagta 18111716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 18641384 - 18641417
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  18641384 caaaagggtcttataattagggacggaggtagta 18641417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 23487097 - 23487064
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  23487097 caaaagggtcttataattagggacggaggtagta 23487064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 38967174 - 38967141
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||| ||||||||||||||||||||||||||    
T  38967174 caaaaggatcttataattagggacagaggtagta 38967141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 45260256 - 45260223
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||| ||||||||||||    
T  45260256 caaaagggtcttataattaggaacagaggtagta 45260223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 12824979 - 12824943
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  12824979 caaaaaggtctcataattagggacagaggtagtactt 12824943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 44580648 - 44580616
Alignment:
Q  49 aaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||| |||||||||    
T  44580648 aaaagggtcttataattagggacggaggtagta 44580616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 31581710 - 31581673
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactta 85  Q
    |||||||||||||||||||||||| |||||||||||||    
T  31581710 caaaagggtcttataattagggacggaggtagtactta 31581673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 32118167 - 32118202
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtact 83  Q
    |||||||||||||||||||||||| |||||||||||    
T  32118167 caaaagggtcttataattagggacggaggtagtact 32118202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 2290020 - 2290053
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  2290020 caaaagggtcttataattagggacggaggtagta 2290053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 9140305 - 9140272
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||| |||||||||||||||||||||||||    
T  9140305 caaaagggccttataattagggacagaggtagta 9140272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 27813529 - 27813496
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  27813529 caaaagggtcttataattagggacggaggtagta 27813496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 33381577 - 33381610
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  33381577 caaaagggtcttataattagggacggaggtagta 33381610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 34012521 - 34012554
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  34012521 caaaagggtcttataattagggacggaggtagta 34012554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 1574751 - 1574719
Alignment:
Q  49 aaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||| |||||||||    
T  1574751 aaaagggtcttataattagggacggaggtagta 1574719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 7400165 - 7400129
Alignment:
Q  45 ttccaaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||| |||||||||||||||| |||||||||    
T  7400165 ttccaaaaggatcttataattagggacggaggtagta 7400129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 41026100 - 41026136
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    |||||||||||||||||||||||| |||| |||||||    
T  41026100 caaaagggtcttataattagggacggagggagtactt 41026136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 42541864 - 42541896
Alignment:
Q  49 aaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||| |||||||||    
T  42541864 aaaagggtcttataattagggacggaggtagta 42541896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 43093413 - 43093449
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    |||||||||||||||||||||| | ||||||||||||    
T  43093413 caaaagggtcttataattaggggcggaggtagtactt 43093449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 12890212 - 12890253
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtacttaataa 89  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  12890212 caaaagggtcttataattagggacggaggtagtatttaataa 12890253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 18970733 - 18970766
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||||||||||    
T  18970733 caaaagggtcttataattagggacagaggtagta 18970766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 25523761 - 25523800
Alignment:
Q  45 ttccaaaagggtcttataattagggacagaggtagtactt 84  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  25523761 ttccaaaagggtcctataattaggaacagaggtagtactt 25523800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 28566184 - 28566149
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtact 83  Q
    |||||||||||||||||||||||| |||||||||||    
T  28566184 caaaagggtcttataattagggacggaggtagtact 28566149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 2060349 - 2060315
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtac 82  Q
    |||||||||||||||||||||||| ||||||||||    
T  2060349 caaaagggtcttataattagggacggaggtagtac 2060315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 2200244 - 2200277
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  2200244 caaaagggtcttataattagggacggaggtagta 2200277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 3095332 - 3095299
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  3095332 caaaagggtcttataattagggacggaggtagta 3095299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 7116303 - 7116336
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  7116303 caaaagggtcttataattagggacggaggtagta 7116336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 8912878 - 8912911
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  8912878 caaaagggtcttataattagggacggaggtagta 8912911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 11201947 - 11201980
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||||| ||||    
T  11201947 caaaagggtcttataattagggacagagggagta 11201980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 18374708 - 18374741
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  18374708 caaaagggtcttataattagggacggaggtagta 18374741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 21220989 - 21221022
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||| |||||||||||||||||    
T  21220989 caaaagggtcttataaatagggacagaggtagta 21221022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 24345682 - 24345715
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  24345682 caaaagggtcttataattagggacggaggtagta 24345715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 26322297 - 26322330
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  26322297 caaaagggtcttataattagggacggaggtagta 26322330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 31751102 - 31751069
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  31751102 caaaagggtcttataattagggacggaggtagta 31751069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 41422545 - 41422512
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  41422545 caaaagggtcttataattagggacggaggtagta 41422512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 41494626 - 41494659
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  41494626 caaaagggtcttataattagggacggaggtagta 41494659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 2200010 - 2199978
Alignment:
Q  49 aaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||| |||||||||    
T  2200010 aaaagggtcttataattagggacggaggtagta 2199978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 7492108 - 7492144
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    |||||||||||||||||||||||| |||| |||||||    
T  7492108 caaaagggtcttataattagggacggagggagtactt 7492144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 11201716 - 11201676
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtacttaata 88  Q
    |||||||||||||||||||||||| |||| |||| ||||||    
T  11201716 caaaagggtcttataattagggacggagggagtatttaata 11201676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 13215825 - 13215857
Alignment:
Q  49 aaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||| |||||||||    
T  13215825 aaaagggtcttataattagggacggaggtagta 13215857  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 23083547 - 23083515
Alignment:
Q  49 aaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||| |||||||||    
T  23083547 aaaagggtcttataattagggacggaggtagta 23083515  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 36750888 - 36750924
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtactt 84  Q
    |||||||||||||||||||||||| || |||||||||    
T  36750888 caaaagggtcttataattagggacggaagtagtactt 36750924  T

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Target: scaffold0237 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 6610 - 6646
Alignment:
Q  45 ttccaaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||| |||||||||    
T  6610 ttccaaaagggtcttataattagggacggaggtagta 6646  T

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Target: scaffold0240 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 18760 - 18795
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtact 83  Q
    |||||||||||||||||||||||| |||||||||||    
T  18760 caaaagggtcttataattagggacggaggtagtact 18795  T

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Target: scaffold0240; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 18530 - 18497
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  18530 caaaagggtcttataattagggacggaggtagta 18497  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 25124250 - 25124285
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtact 83  Q
    |||||||||||||||||||||||| |||||||||||    
T  25124250 caaaagggtcttataattagggacggaggtagtact 25124285  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 31937109 - 31937074
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtact 83  Q
    |||||||||||||||||||||||| |||||||||||    
T  31937109 caaaagggtcttataattagggacggaggtagtact 31937074  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 54878012 - 54878059
Alignment:
Q  41 tttcttccaaaagggtcttataattagggacagaggtagtacttaata 88  Q
    |||||| ||||| |||||||||||||||||| ||||||||| ||||||    
T  54878012 tttctttcaaaacggtcttataattagggacggaggtagtaattaata 54878059  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 49373697 - 49373735
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagtacttaa 86  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  49373697 caaaagggtcttataattagggacggaggtagtaattaa 49373735  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 4415998 - 4415965
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  4415998 caaaagggtcttataattagggacggaggtagta 4415965  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 6807462 - 6807429
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||||| ||||    
T  6807462 caaaagggtcttataattagggacagagggagta 6807429  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 7698473 - 7698506
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  7698473 caaaagggtcttataattagggacggaggtagta 7698506  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 18872750 - 18872717
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  18872750 caaaagggtcttataattagggacggaggtagta 18872717  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 20455185 - 20455218
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  20455185 caaaagggtcttataattagggacggaggtagta 20455218  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 24154220 - 24154187
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||| ||||||||||    
T  24154220 caaaagggtcttataattagggagagaggtagta 24154187  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 28495413 - 28495380
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||| ||||||||||||||||||||||||||    
T  28495413 caaaaggatcttataattagggacagaggtagta 28495380  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 28501390 - 28501423
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  28501390 caaaagggtcttataattagggacggaggtagta 28501423  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 29520168 - 29520201
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  29520168 caaaagggtcttataattagggacggaggtagta 29520201  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 32899222 - 32899255
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  32899222 caaaagggtcttataattagggacggaggtagta 32899255  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 39670990 - 39671023
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  39670990 caaaagggtcttataattagggacggaggtagta 39671023  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 46950025 - 46949992
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  46950025 caaaagggtcttataattagggacggaggtagta 46949992  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 49793124 - 49793091
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  49793124 caaaagggtcttataattagggacggaggtagta 49793091  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 53564360 - 53564393
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  53564360 caaaagggtcttataattagggacggaggtagta 53564393  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 55563131 - 55563164
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  55563131 caaaagggtcttataattagggacggaggtagta 55563164  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 56432551 - 56432518
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  56432551 caaaagggtcttataattagggacggaggtagta 56432518  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 625967 - 626003
Alignment:
Q  45 ttccaaaagggtcttataattagggacagaggtagta 81  Q
    |||||||| |||||||||||||||||| |||||||||    
T  625967 ttccaaaaaggtcttataattagggacggaggtagta 626003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 21265252 - 21265220
Alignment:
Q  49 aaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||| |||||||||    
T  21265252 aaaagggtcttataattagggacggaggtagta 21265220  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 30523796 - 30523764
Alignment:
Q  49 aaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||| |||||||||    
T  30523796 aaaagggtcttataattagggacggaggtagta 30523764  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 30783706 - 30783678
Alignment:
Q  50 aaagggtcttataattagggacagaggta 78  Q
    |||||||||||||||||||||||||||||    
T  30783706 aaagggtcttataattagggacagaggta 30783678  T

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Target: scaffold0674 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 5184 - 5151
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  5184 caaaagggtcttataattagggacggaggtagta 5151  T

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Target: scaffold0549 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 10186 - 10219
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  10186 caaaagggtcttataattagggacggaggtagta 10219  T

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Target: scaffold0250 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 9199 - 9166
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||| ||||||||||||||||||||||||    
T  9199 caaaagggtgttataattagggacagaggtagta 9166  T

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Target: scaffold0163 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 1450 - 1483
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  1450 caaaagggtcttataattagggacggaggtagta 1483  T

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Target: scaffold0161 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 3471 - 3438
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  3471 caaaagggtcttataattagggacggaggtagta 3438  T

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Target: scaffold0107 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 48687 - 48654
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  48687 caaaagggtcttataattagggacggaggtagta 48654  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 93818 - 93785
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    ||||||||||||||||||||||||||| ||||||    
T  93818 caaaagggtcttataattagggacagatgtagta 93785  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 164247 - 164214
Alignment:
Q  48 caaaagggtcttataattagggacagaggtagta 81  Q
    |||||||||||||||||||||||| |||||||||    
T  164247 caaaagggtcttataattagggacggaggtagta 164214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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