View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_11 (Length: 569)
Name: NF1250_low_11
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 66 - 560
Target Start/End: Complemental strand, 40641296 - 40640802
Alignment:
| Q |
66 |
atctcatctcatctgatcaatccaaacatggactaagaagaggttaaatacataaaaagaagaggtaaaatcaacgataaatttgggaaattgaatttta |
165 |
Q |
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| T |
40641296 |
atctcatctcatctcatcaatccaaacgtggcctaagaacaggttaaatacataaaaagaagaggtaaaatcaacgataaatttgggaaattgaatttta |
40641197 |
T |
|
| Q |
166 |
tatttattcattacttggaatttgtattgctaaattgttcttatgaattatagaatcggctccggtttgtttcatttctcttcttgtctttgtgtagatg |
265 |
Q |
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| T |
40641196 |
tatttattcattacttggaatttgtattgctaaattgttcttatgaattatagaatcggctccagtttgtttcatttctcttcttgtctttgtgtagatg |
40641097 |
T |
|
| Q |
266 |
gaagaaggggaaacaaccattttggtccttgtgcatccgttgttggt-ccggactcaaagaaaaatgcgaaacagtccctcaatccaaaatccattagcc |
364 |
Q |
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| T |
40641096 |
gaagaaggggaaacaaccattttggtccttgtgcatccgttgttggtcccggactcaaagaaaaatgtgaaacagtccctcaacccaaaatccattagcc |
40640997 |
T |
|
| Q |
365 |
actttgatccctggcgttagatttgactgttaactccaaacaaaaacagaactgacannnnnnnggctaacaagtaacacatgatgtggcattagggaca |
464 |
Q |
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| T |
40640996 |
actttgatccctggcgttagatttgactgttaactccaaacaaaaacagaactgacatttttttggctaacaagtaacacatgatgtggcattagggac- |
40640898 |
T |
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| Q |
465 |
aaaatgaaagaaaaacatttctggataccttttcaattcgtagaaccccagttttgaatatcccttcatcaattccctaatcctactctttcatct |
560 |
Q |
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| T |
40640897 |
aaaatgaaagaaaaacatttctggataccttttcaattcgtagaaccccagttttgaatatcccttcatcaattccctaatcctactctttcatct |
40640802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 516 - 556
Target Start/End: Complemental strand, 29360776 - 29360736
Alignment:
| Q |
516 |
ttttgaatatcccttcatcaattccctaatcctactctttc |
556 |
Q |
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| T |
29360776 |
ttttgaatatcccttcatcaaatctctaatcctactctttc |
29360736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 556
Target Start/End: Original strand, 36370963 - 36371020
Alignment:
| Q |
499 |
aattcgtagaaccccagttttgaatatcccttcatcaattccctaatcctactctttc |
556 |
Q |
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| T |
36370963 |
aattcctagaatcccaattttgaatatcccttcatcaaatctttaatcttactctttc |
36371020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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