View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_111 (Length: 251)
Name: NF1250_low_111
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_111 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 21546764 - 21547007
Alignment:
| Q |
12 |
atgaatagttaaactgattgtaaattatatagcaattccttcaaaacactctgaaaatttcttgtacatgtaatatagagtaattaaggccgatgaagat |
111 |
Q |
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| T |
21546764 |
atgaatagttaaactgattgtaaattatatagcaattccttcaaaacactctgaaaatttcttgtacatgtaatatagagtaattaaggccgataaagat |
21546863 |
T |
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| Q |
112 |
gtaagtaagaacaatgtttaaaaatatatagat----gtaattaagctagagtagtgaattttaagaaaacatgtaaatgatagagttcattgcattcag |
207 |
Q |
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| T |
21546864 |
gtaagtaagaacaatgtttaaaaatatatagatgtaagtaattaagctagagtagtgaattttacgaaaacatgtaaatgatagagttcattgcattcag |
21546963 |
T |
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| Q |
208 |
aatattaaataatagcaatgtctaaaaacaaagacttgtccaat |
251 |
Q |
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| T |
21546964 |
aatattaaataatagcaatgtctacaaacaaagacttgtccaat |
21547007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 9452706 - 9452471
Alignment:
| Q |
15 |
aatagttaaactgattgtaaa-ttatatagcaattccttcaaaacactctgaaaatttcttgtacatgtaatatagagtaattaaggccgatgaagatgt |
113 |
Q |
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| T |
9452706 |
aatagttaaactgactgtaaaattatatagcaattccttcaaaacact--gaaaatttcttgtacatgtatta----gtaattaaggctgttgaagatgt |
9452613 |
T |
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| Q |
114 |
aagtaagaacaatgtttaaaaatatatagatgtaa----ttaagctagagtagtgaattttaagaaaacatgtaaatgatagagttcattgcattcagaa |
209 |
Q |
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|||||| | |||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9452612 |
aagtaatagcaatgtctaaaaatatatagatgtaagtaattaagccagagtagtgaattttacgaaaacatgtaaatgatagagttcattgcattcagaa |
9452513 |
T |
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| Q |
210 |
tattaaataatagcaatgtctaaaaacaaagacttgtccaat |
251 |
Q |
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| T |
9452512 |
tattaaataatagcaatgtctaaaaacaaagacttgtccaat |
9452471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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