View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_120 (Length: 224)
Name: NF1250_low_120
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_120 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 44314490 - 44314347
Alignment:
| Q |
1 |
tcccttttcccgaaacagcagcagtttgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314490 |
tcccttttcccgaaacagcagcagttcgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagc |
44314391 |
T |
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| Q |
101 |
acatatatgtcgggtagctccagagtctaccacccatttgttca |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314390 |
acatatatgtcgggtagctccagagtctaccacccatttgttca |
44314347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 34098402 - 34098545
Alignment:
| Q |
1 |
tcccttttcccgaaacagcagcagtttgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098402 |
tcccttttcccgaaacagcagcagttcgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagc |
34098501 |
T |
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| Q |
101 |
acatatatgtcgggtagctccagagtctaccacccatttgttca |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098502 |
acatatatgtcgggtagctccagagtctaccacccatttgttca |
34098545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 40082 - 40225
Alignment:
| Q |
1 |
tcccttttcccgaaacagcagcagtttgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagc |
100 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40082 |
tcccttttcccgaaaaagcagcagttcgagagtcaccaaggtaaaccagttcttctccatcccccacaatattgtaggaggtgaaggcatccttagtagc |
40181 |
T |
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| Q |
101 |
acatatatgtcgggtagctccagagtctaccacccatttgttca |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40182 |
acatatatgtcgggtagctccagagtctaccacccatttgttca |
40225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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