View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_134 (Length: 209)
Name: NF1250_low_134
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_134 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 5692777 - 5692926
Alignment:
| Q |
1 |
actaagcgcgtctctccatttcagcgacttgtctgtcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgt |
100 |
Q |
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| T |
5692777 |
actaagcgcgtctctccatttcagcgacttgtctgtcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgt |
5692876 |
T |
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| Q |
101 |
acatctgaaggatcaacatcatagaacaccggcaacactatctgtcctat |
150 |
Q |
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| T |
5692877 |
acatctgaaggatcaacatcatagaacaccggcaacactatctgccctat |
5692926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 5174383 - 5174244
Alignment:
| Q |
11 |
tctctccatttcagcgacttgtctgtcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaag |
110 |
Q |
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| T |
5174383 |
tctctccatttcagggacgtgcttttcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatccgaag |
5174284 |
T |
|
| Q |
111 |
gatcaacatcatagaacaccggcaacactatctgtcctat |
150 |
Q |
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| T |
5174283 |
gatcaacatcatagaacaccggcaacactatctgccctat |
5174244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 5276129 - 5275990
Alignment:
| Q |
11 |
tctctccatttcagcgacttgtctgtcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaag |
110 |
Q |
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| T |
5276129 |
tctctcaatttcagggacgtgcttttcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaag |
5276030 |
T |
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| Q |
111 |
gatcaacatcatagaacaccggcaacactatctgtcctat |
150 |
Q |
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| T |
5276029 |
gatcaacatcatagaacaccggcaacactatctgccctat |
5275990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 5380609 - 5380466
Alignment:
| Q |
11 |
tctctccatttcagcgacttgtctgtcttcttt---gaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctg |
107 |
Q |
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| T |
5380609 |
tctctccatttcagcgtcttatctttcttcttcttcgaaagtttgctcaagagactttcaaaagcttgtccaaactcaccagtttggtgacgtacctcca |
5380510 |
T |
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| Q |
108 |
aaggatcaacatcatagaacaccggcaacactatctgtcctatg |
151 |
Q |
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| T |
5380509 |
agggatcaacatcatagaacaccggtagcactatctgtgctatg |
5380466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 5276198 - 5276130
Alignment:
| Q |
11 |
tctctccatttcagcgacttgtctgtcttctttgaaattctgctcaagagactttggaacgcttttcca |
79 |
Q |
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| T |
5276198 |
tctctccatttcagggatgtgcttttcttctttaaaattctgctcaagagactttggaacgcttttcca |
5276130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 5149595 - 5149690
Alignment:
| Q |
40 |
ctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaa |
135 |
Q |
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| T |
5149595 |
ctttgaaattctattcaagagactttgaaatgctttgccaaactcacttgtttggtgacgtacttcacatggatctacatcataaaacactggcaa |
5149690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 5107707 - 5107765
Alignment:
| Q |
74 |
tttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccgg |
132 |
Q |
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| T |
5107707 |
tttccaaactcaccagtttgatgacgtacttctgagggatcaacatcatagaacaccgg |
5107765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 5093146 - 5093035
Alignment:
| Q |
40 |
ctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacact |
139 |
Q |
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| T |
5093146 |
ctttgaaattctatttaagagattttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaact |
5093047 |
T |
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| Q |
140 |
atctgtcctatg |
151 |
Q |
| |
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||||| |||||| |
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| T |
5093046 |
atctgccctatg |
5093035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 5160391 - 5160502
Alignment:
| Q |
40 |
ctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacact |
139 |
Q |
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|||||||||||| | |||||| |||| || ||||| ||||||| ||| | ||||| ||||| || || ||||| ||||| |||||||| ||||| ||| |
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| T |
5160391 |
ctttgaaattctatttaagagattttgaaatgctttaccaaacttgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcaaaact |
5160490 |
T |
|
| Q |
140 |
atctgtcctatg |
151 |
Q |
| |
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||||| |||||| |
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| T |
5160491 |
atctgccctatg |
5160502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 5340758 - 5340679
Alignment:
| Q |
47 |
attctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaa |
126 |
Q |
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|||||| |||| ||| |||| || |||||||||||||| |||||||| || |||| ||||| ||||||||||| ||||| |
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| T |
5340758 |
attctgttcaaaagattttgaaatgcttttccaaactctcctgtttgatgacgtatttctgagggatcaacatcgtagaa |
5340679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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