View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1250_low_14 (Length: 522)
Name: NF1250_low_14
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 85 - 453
Target Start/End: Original strand, 36995453 - 36995825
Alignment:
| Q |
85 |
gctcagctcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca |
184 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36995453 |
gctcagctcaatacttccttacaaggagaggtgggaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca |
36995552 |
T |
|
| Q |
185 |
atg----ttattggtcaatatacttagtaacaaggttaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacat |
280 |
Q |
| |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36995553 |
atgcctgttattggtcaatatacttagtaacaaggtaaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacat |
36995652 |
T |
|
| Q |
281 |
accgacttaccccaacacctgaatctgcaattctacttcaacattaccctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcc |
380 |
Q |
| |
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| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36995653 |
aacgacttaccccaacacctgaatctacaattctacttcaacattaccctcagcgtcaagaaaaccattttcacaggcacgctcaagatcaaatacatcc |
36995752 |
T |
|
| Q |
381 |
cccgggtgagccttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagtaatagtaaagc |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36995753 |
cccgggtgagccttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagtaatagtaaagc |
36995825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 92 - 450
Target Start/End: Original strand, 37005404 - 37005760
Alignment:
| Q |
92 |
tcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacacccaatg---- |
187 |
Q |
| |
|
|||| |||||||| |||||| ||| || || || ||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||| ||| |
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|
| T |
37005404 |
tcgaaacttcctttcaaggaaaggcgggaaaactttttcactgtgcattaaaaacaatcacacaatgagttgcatgtaatgcagtgacacctgatgccta |
37005503 |
T |
|
| Q |
188 |
ttattggtcaatatacttagtaacaaggttaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacataccgact |
287 |
Q |
| |
|
|||||| | |||||||||||||| | |||||||| | ||||||||| |||||||| || | |||||||| ||| ||||||||| ||||| |||| |
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|
| T |
37005504 |
ttattgataaatatacttagtaatatggttaaaattctatgagtatgttgaccaataaaaatagaatgatatt------tctaatgcacacataatgact |
37005597 |
T |
|
| Q |
288 |
taccccaacacctgaatctgcaattctacttcaacattaccctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcccccgggt |
387 |
Q |
| |
|
||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||||||| | |||| |||||||||| ||| || |
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|
| T |
37005598 |
tacccaatcacctgaatctgcaattctactttaacattaccctcagggtcaagaaaatctatttcacaggcagccgcaagcccaaatacatcgcccatgt |
37005697 |
T |
|
| Q |
388 |
gagccttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagtaatagtaa |
450 |
Q |
| |
|
| | ||| |||| ||| |||| ||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
37005698 |
aatctttagaaacgaagctaaatgcatctgaataaactcaaatgaaatagttagtattagtaa |
37005760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 85 - 450
Target Start/End: Complemental strand, 13684773 - 13684404
Alignment:
| Q |
85 |
gctcagctcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca |
184 |
Q |
| |
|
|||||| |||||||||| || |||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13684773 |
gctcagttcgatacttctttacaaggagaggcgggaagaaattttctctgcgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca |
13684674 |
T |
|
| Q |
185 |
atg----ttattggtcaatatacttagtaacaaggttaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacat |
280 |
Q |
| |
|
||| ||||||||||||||||| ||||| | ||| |||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
13684673 |
atgcttgttattggtcaatatactcagtaatacggtaaaaattctatgagtatattgaccaacaatagtagaatgagattgagatttctaatgcatacat |
13684574 |
T |
|
| Q |
281 |
accgacttaccccaacacctgaatctgcaattctacttcaacattaccctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcc |
380 |
Q |
| |
|
| |||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
13684573 |
aacgacttacccaaacatctgaatctgcaattctacttgaacattaccctcagcgtgaagaaaacctttttcataggcacgctcaagatgaaatacatat |
13684474 |
T |
|
| Q |
381 |
cccgggtgagccttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagtaatagtaa |
450 |
Q |
| |
|
| |||| ||| |||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
13684473 |
cgcgggcgagtcttacaaactgagtggaatcgatctgaataaactcaaatgaaatagttagtattagtaa |
13684404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 85 - 443
Target Start/End: Original strand, 22191591 - 22191953
Alignment:
| Q |
85 |
gctcagctcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca |
184 |
Q |
| |
|
|||||| | ||||| || || ||| |||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
22191591 |
gctcagtttgatacctctttacaaagagaggcgggaagatattttctctgtgcattaacaacaatcatacaatgagttgcatggaattcagtgacaccga |
22191690 |
T |
|
| Q |
185 |
atg----ttattggtcaatatacttagtaacaaggttaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacat |
280 |
Q |
| |
|
||| ||||||||||||||||||||||| | || |||| | |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
22191691 |
atgcatgttattggtcaatatacttagtaatattgtaaaaattctatgagtatattgaccaacaacagtaaaatgagattgagatttcttatgcatacat |
22191790 |
T |
|
| Q |
281 |
accgacttaccccaacacctgaatctgcaattctacttcaacattaccctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcc |
380 |
Q |
| |
|
| |||||||||| |||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||| ||| | |
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|
| T |
22191791 |
aacgacttacccaaacatttgaatctgcaattctactttaacattatcctcagcgtcaagaaaacctttttcacaagcatgctcaagatgaaaatcatac |
22191890 |
T |
|
| Q |
381 |
cccgggtgagccttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagta |
443 |
Q |
| |
|
|| ||||| |||||||||| |||| |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
22191891 |
cctaggtgaatcttacaaactgagtggaatcgatctgaataaactcagatgaaatagttagta |
22191953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 26648384 - 26648486
Alignment:
| Q |
85 |
gctcagctcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca |
184 |
Q |
| |
|
||||||||||||||||| || |||||||||| | |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
26648384 |
gctcagctcgatacttctttacaaggagaggctggaagaaattttctctgtgcattaataacgatcatacaatgagttgcatggaattcagtgacaccca |
26648483 |
T |
|
| Q |
185 |
atg |
187 |
Q |
| |
|
||| |
|
|
| T |
26648484 |
atg |
26648486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 26648531 - 26648617
Alignment:
| Q |
269 |
taatgcatacataccgacttaccccaacacctgaatctgcaattctacttcaacattaccctcagcgtcaagaaaacctttttcaca |
355 |
Q |
| |
|
||||||||||||| ||||||||| || | |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
26648531 |
taatgcatacataaggacttacccaaaaatctgaatctgcaattctactttaacattaccctcatcgtcaagaaaaccttcttcaca |
26648617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 9e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 110 - 435
Target Start/End: Original strand, 8597983 - 8598315
Alignment:
| Q |
110 |
gagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacacccaatg----ttattggtcaatatactt |
205 |
Q |
| |
|
|||||| || ||||||||| |||||||||| | ||||||||||||||||||||||||||||||| || |||||| || |||||||||||||||||| |
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|
| T |
8597983 |
gagaggcgggaagacatttagtctgtgcatttagaacaatcatacaatgagttgcatggaattcaatggcacccattgactgttattggtcaatatactt |
8598082 |
T |
|
| Q |
206 |
agtaacaaggttaaaaatttatgagtatatt---gaccaacaacagtagaatgagattgagatttctaatgcatacataccgacttaccccaacacctga |
302 |
Q |
| |
|
||||| | ||| |||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||| |
|
|
| T |
8598083 |
agtaatatggtaaaaattatatgagtatattattgaccaacaacagtagaatgagattgagatttctaatgcataaataacgacttacccaaacatctga |
8598182 |
T |
|
| Q |
303 |
atctgcaattctacttcaacattaccctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcccccgggtgagccttacaaacta |
402 |
Q |
| |
|
| ||||||||||||||||| ||| |||| ||| ||||||||||| ||||||||||||||||||| |||| |||||| ||||||||||| |||||||||| |
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|
| T |
8598183 |
aactgcaattctacttcaagattgcccttagcatcaagaaaaccattttcacaggcacgctcaaaatcatatacataccccgggtgagtcttacaaactg |
8598282 |
T |
|
| Q |
403 |
agtgaaatcgatctgaataaactcaaatgaaat |
435 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| |
|
|
| T |
8598283 |
agtggaatcgatctgattaaactcaaatgaaat |
8598315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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