View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_142 (Length: 206)

Name: NF1250_low_142
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_142
NF1250_low_142
[»] chr4 (10 HSPs)
chr4 (1-116)||(22499096-22499211)
chr4 (1-110)||(22499909-22500018)
chr4 (52-115)||(39429923-39429986)
chr4 (52-114)||(23424471-23424533)
chr4 (37-115)||(33370846-33370924)
chr4 (68-110)||(34372281-34372323)
chr4 (43-116)||(23383308-23383381)
chr4 (68-116)||(36013954-36014002)
chr4 (68-108)||(41261128-41261168)
chr4 (31-103)||(43079171-43079243)
[»] chr6 (4 HSPs)
chr6 (1-115)||(34034979-34035093)
chr6 (1-110)||(34034172-34034281)
chr6 (68-114)||(19761586-19761632)
chr6 (42-115)||(25067826-25067899)
[»] chr2 (10 HSPs)
chr2 (1-115)||(38779999-38780113)
chr2 (26-114)||(38779897-38779985)
chr2 (60-116)||(34617651-34617707)
chr2 (52-115)||(20992005-20992068)
chr2 (68-115)||(14565214-14565261)
chr2 (52-107)||(20991294-20991349)
chr2 (1-87)||(4976440-4976526)
chr2 (1-87)||(4994347-4994433)
chr2 (68-108)||(6084877-6084917)
chr2 (43-115)||(36390956-36391028)
[»] chr1 (12 HSPs)
chr1 (27-114)||(4641723-4641810)
chr1 (40-114)||(4640528-4640602)
chr1 (60-115)||(2687721-2687776)
chr1 (5-93)||(31389081-31389169)
chr1 (68-115)||(48835099-48835146)
chr1 (33-114)||(6766974-6767055)
chr1 (26-87)||(31788236-31788297)
chr1 (43-114)||(32537645-32537716)
chr1 (43-115)||(38469262-38469334)
chr1 (66-107)||(48869776-48869817)
chr1 (68-108)||(30780986-30781026)
chr1 (47-115)||(38931313-38931381)
[»] chr3 (8 HSPs)
chr3 (43-101)||(45501271-45501329)
chr3 (52-114)||(43768745-43768807)
chr3 (52-100)||(37104366-37104414)
chr3 (45-114)||(45297549-45297618)
chr3 (68-100)||(32489960-32489992)
chr3 (78-114)||(37511128-37511164)
chr3 (67-107)||(44022088-44022128)
chr3 (68-108)||(49161810-49161850)
[»] chr5 (6 HSPs)
chr5 (35-107)||(6912123-6912195)
chr5 (34-113)||(4789521-4789600)
chr5 (68-115)||(4820453-4820500)
chr5 (60-114)||(35262452-35262506)
chr5 (27-115)||(4554656-4554744)
chr5 (68-108)||(42650763-42650803)
[»] chr8 (5 HSPs)
chr8 (52-114)||(10198225-10198287)
chr8 (44-115)||(30846474-30846545)
chr8 (47-114)||(37562295-37562362)
chr8 (52-115)||(38572221-38572284)
chr8 (26-87)||(43972046-43972107)
[»] chr7 (9 HSPs)
chr7 (45-115)||(40320389-40320459)
chr7 (43-115)||(42607080-42607152)
chr7 (68-107)||(6729405-6729444)
chr7 (68-115)||(29060741-29060788)
chr7 (68-114)||(4270176-4270222)
chr7 (72-113)||(40257468-40257509)
chr7 (71-115)||(23634016-23634060)
chr7 (68-112)||(24996685-24996729)
chr7 (36-108)||(32547709-32547781)
[»] scaffold0039 (1 HSPs)
scaffold0039 (68-115)||(32890-32937)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 22499211 - 22499096
Alignment:
Q  1 aaaaatttggtgctgaatatccactgtaaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttccca 100  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  22499211 aaaaatttggtgctgaatgtccactgtaaaactatgttatctatttgatccaatggtttaaaataactttcccatgatggaaaacaattctcctttccca 22499112  T
Q  101 tgttaaactccacctc 116  Q
    ||||||||||||||||    
T  22499111 tgttaaactccacctc 22499096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 22499909 - 22500018
Alignment:
Q  1 aaaaatttggtgctgaatatccactgtaaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttccca 100  Q
    ||||||||| |||||||  ||||   |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  22499909 aaaaatttgatgctgaaagtccatgataaaactatgttctctatttgatccaatggtttaaaataactttcctatggtggaaaacaattctcctttccca 22500008  T
Q  101 tgttaaactc 110  Q
    ||||||||||    
T  22500009 tgttaaactc 22500018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 39429923 - 39429986
Alignment:
Q  52 aatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||||| |||| || ||||||||||||| |||||| ||||| |||||||| ||||| ||||||    
T  39429923 aatggttgaaaaaaactttcccatggtgggaaacaactctccattcccatgctaaaccccacct 39429986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 23424533 - 23424471
Alignment:
Q  52 aatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    ||||||| |||| || |||| ||||||||||||||| ||||| ||||| || |||||||||||    
T  23424533 aatggttgaaaaaaactttctcatggtggaaaacaactctccattcccttgctaaactccacc 23424471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 33370846 - 33370924
Alignment:
Q  37 ttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||||| |||||| ||||| | | | ||| ||||||||||||| |||||| | |||||||||||| ||||| ||||||    
T  33370846 ttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagtatcctttcccatgctaaaccccacct 33370924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 34372281 - 34372323
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaactc 110  Q
    |||||||| || ||||||||||| |||||||||||||||||||    
T  34372281 tttcccatagttgaaaacaattcccctttcccatgttaaactc 34372323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 23383381 - 23383308
Alignment:
Q  43 atttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacctc 116  Q
    |||||||| ||||| | ||| ||| ||||||||||||| |||||| ||||||||| |||  ||||| |||||||    
T  23383381 atttgatcgaatggataaaattaactttcccatggtgggaaacaactctcctttctcattctaaaccccacctc 23383308  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 36013954 - 36014002
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaactccacctc 116  Q
    ||||||||||||| |||||| | || ||||||||| |||||||||||||    
T  36013954 tttcccatggtggtaaacaactttcatttcccatgctaaactccacctc 36014002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 41261168 - 41261128
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaac 108  Q
    |||||||||||||||||||| | |||||||||||| |||||    
T  41261168 tttcccatggtggaaaacaactttcctttcccatgctaaac 41261128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 43079243 - 43079171
Alignment:
Q  31 actatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgt 103  Q
    |||||||||| || |||||| ||||| | ||| ||| |||||||| ||||||||  ||| |||||||||||||    
T  43079243 actatgttctttacttgatctaatggataaaattaactttcccattgtggaaaaagattgtcctttcccatgt 43079171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 34034979 - 34035093
Alignment:
Q  1 aaaaatttggtgctgaatatccactgtaaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttccca 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  34034979 aaaaatttggtgctgaatgtccactgtaaaactatgttctctatttgatccaatggtttaaaataactttcccatgatgggaaacaattctcctttccca 34035078  T
Q  101 tgttaaactccacct 115  Q
    |||||||||||||||    
T  34035079 tgttaaactccacct 34035093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 34034281 - 34034172
Alignment:
Q  1 aaaaatttggtgctgaatatccactgtaaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttccca 100  Q
    ||||||||| |||||||  ||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  34034281 aaaaatttgatgctgaaagtccatgataaaactatgttctctatttgatccaatggtttaaaataactttcccatggtgggaagcaattctcctttccca 34034182  T
Q  101 tgttaaactc 110  Q
    ||||||||||    
T  34034181 tgttaaactc 34034172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 19761586 - 19761632
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    |||| ||||||||||||  |||| |||||||||||||||||||||||    
T  19761586 tttctcatggtggaaaatgattcacctttcccatgttaaactccacc 19761632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 25067826 - 25067899
Alignment:
Q  42 tatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    |||||||||||||||   |||| || ||||| ||||||| |||||| | |||||||||||| ||||| ||||||    
T  25067826 tatttgatccaatggacaaaaacaactttcctatggtgggaaacaaatatcctttcccatgctaaaccccacct 25067899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 38779999 - 38780113
Alignment:
Q  1 aaaaatttggtgctgaatatccactgtaaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttccca 100  Q
    |||||||||||||||||| ||||   ||||||||||||||||||||||||||||  |||||||||| ||||||||| |||||| ||||||||||||||||    
T  38779999 aaaaatttggtgctgaatgtccatgataaaactatgttctctatttgatccaataatttaaaataactttcccatgatggaaagcaattctcctttccca 38780098  T
Q  101 tgttaaactccacct 115  Q
    |||||||||||||||    
T  38780099 tgttaaactccacct 38780113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 38779985 - 38779897
Alignment:
Q  26 gtaaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    ||||||||||||||||||||| |||||| |||||||||||| ||| ||||| ||||||||||| || ||||||||||||||||||||||    
T  38779985 gtaaaactatgttctctatttaatccaacggtttaaaataacttttccatgatggaaaacaatccttctttcccatgttaaactccacc 38779897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 34617707 - 34617651
Alignment:
Q  60 aaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacctc 116  Q
    ||||||| ||||||||||||| |||||||| |||||||||||| ||||| |||||||    
T  34617707 aaaataactttcccatggtgggaaacaattatcctttcccatgctaaaccccacctc 34617651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 20992005 - 20992068
Alignment:
Q  52 aatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||||| |||| || |||||||||||||||||||| ||||| |||||||| ||||| ||||||    
T  20992005 aatggttgaaaaaaactttcccatggtggaaaacaactctccattcccatgctaaaccccacct 20992068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 14565214 - 14565261
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||||||||||| |||  |||| ||||||||||||||||||||||||    
T  14565214 tttcccatggtgggaaaggattcacctttcccatgttaaactccacct 14565261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 20991349 - 20991294
Alignment:
Q  52 aatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaa 107  Q
    ||||||| |||| || |||||||||||||||||||| ||||| |||||||| ||||    
T  20991349 aatggttgaaaaaaactttcccatggtggaaaacaactctccattcccatgctaaa 20991294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 4976440 - 4976526
Alignment:
Q  1 aaaaatttggtgctgaatatccactgtaaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaa 87  Q
    |||||||||||| ||| | || |  |||||| |||||||||||||| ||| ||||||| ||| ||| |||||||| |||| ||||||    
T  4976440 aaaaatttggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaa 4976526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 4994347 - 4994433
Alignment:
Q  1 aaaaatttggtgctgaatatccactgtaaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaa 87  Q
    |||||||||||| ||| | || |  |||||| |||||||||||||| ||| ||||||| ||| ||| |||||||| |||| ||||||    
T  4994347 aaaaatttggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaa 4994433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 6084917 - 6084877
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaac 108  Q
    ||||||||| ||| ||||||||| |||||||||||||||||    
T  6084917 tttcccatgatgggaaacaattcccctttcccatgttaaac 6084877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 36391028 - 36390956
Alignment:
Q  43 atttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    |||||||| ||||||| ||| | | ||||||||||||| |||||| |  ||||||||||| ||||| ||||||    
T  36391028 atttgatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatgctaaaccccacct 36390956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 4641723 - 4641810
Alignment:
Q  27 taaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    |||||||||||||||||||||||||||||||| ||||| | |||||| |||||| ||||||||| ||||||||||| |||||||||||    
T  4641723 taaaactatgttctctatttgatccaatggttgaaaattactttcccttggtgggaaacaattcccctttcccatgctaaactccacc 4641810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 4640602 - 4640528
Alignment:
Q  40 tctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    ||||||||||| ||||||| ||||| | ||||||||||||| ||||||||| ||||| ||||| |||||||||||    
T  4640602 tctatttgatctaatggttgaaaattactttcccatggtgggaaacaattcccctttaccatgctaaactccacc 4640528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 2687721 - 2687776
Alignment:
Q  60 aaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||||||||||||||||||| |||||||| |||||||||||| ||||| ||||||    
T  2687721 aaaataattttcccatggtgggaaacaattatcctttcccatgctaaaccccacct 2687776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 31389169 - 31389081
Alignment:
Q  5 atttggtgctgaatatccactgtaaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcc 93  Q
    |||||||| ||||| ||||   |||||||||||||||||||| ||||||| ||| ||||| | ||||||||| ||| |||||| |||||    
T  31389169 atttggtgttgaatgtccataataaaactatgttctctatttaatccaatcgttaaaaatgactttcccatgatgggaaacaactctcc 31389081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 48835099 - 48835146
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  48835099 tttcccatggtggaaaacaattcccctttcccatgctaaaccccacct 48835146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 6767055 - 6766974
Alignment:
Q  33 tatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    |||| ||| ||||||||| ||||||| |||| || ||| ||||| ||||||||||||| ||||| ||||  |||||||||||    
T  6767055 tatggtctatatttgatctaatggttaaaaaaaacttttccatgatggaaaacaattccccttttccatactaaactccacc 6766974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 31788236 - 31788297
Alignment:
Q  26 gtaaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaa 87  Q
    |||||| |||||||||||||| ||| ||||||| ||| ||| ||||||||||||| ||||||    
T  31788236 gtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaa 31788297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 32537716 - 32537645
Alignment:
Q  43 atttgatccaatggtttaaaa-taattttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    |||||||||||||||| |||| ||| ||||||||||||| ||| ||||  |||||||||||||||||| ||||    
T  32537716 atttgatccaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgttaaacttcacc 32537645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 38469262 - 38469334
Alignment:
Q  43 atttgatccaatggtttaaaa-taattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    |||||||| ||||||| |||| ||| ||||||||||||||||| ||||  ||||||||||| |||||| |||||    
T  38469262 atttgatctaatggttaaaaactaactttcccatggtggaaaa-aattagcctttcccatgctaaacttcacct 38469334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 48869817 - 48869776
Alignment:
Q  66 attttcccatggtggaaaacaattctcctttcccatgttaaa 107  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  48869817 attttcccatggtggaaaagaagtctcctttcccaagttaaa 48869776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 30780986 - 30781026
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaac 108  Q
    ||||||||| ||| |||||| ||||||||||||||||||||    
T  30780986 tttcccatgatgggaaacaactctcctttcccatgttaaac 30781026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 38931381 - 38931313
Alignment:
Q  47 gatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    |||| ||||||| ||| | | ||||||||||||| ||||||||| |||||| |||| ||||| ||||||    
T  38931381 gatctaatggttcaaattgactttcccatggtgggaaacaattcccctttctcatgctaaaccccacct 38931313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 45501271 - 45501329
Alignment:
Q  43 atttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccat 101  Q
    |||||||||||||||||||| | | |||||||||||||||||||| || ||||||||||    
T  45501271 atttgatccaatggtttaaatttactttcccatggtggaaaacaactcccctttcccat 45501329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 43768745 - 43768807
Alignment:
Q  52 aatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    ||||||| |||| || |||||||||||||||||||| ||||| |||||||| ||||| |||||    
T  43768745 aatggttgaaaaaaactttcccatggtggaaaacaactctccattcccatgctaaaccccacc 43768807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 37104414 - 37104366
Alignment:
Q  52 aatggtttaaaataattttcccatggtggaaaacaattctcctttccca 100  Q
    |||||||||||| || ||||||||||||||||| || ||||||||||||    
T  37104414 aatggtttaaaaaaactttcccatggtggaaaaaaagtctcctttccca 37104366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 45297618 - 45297549
Alignment:
Q  45 ttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    |||||| ||||||| |||| || ||||||||| ||| |||||| |||||||||||||  ||||| |||||    
T  45297618 ttgatctaatggttaaaaaaaactttcccatgatgggaaacaactctcctttcccatactaaaccccacc 45297549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 32489992 - 32489960
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttccca 100  Q
    ||||||||||||||||| |||||||||||||||    
T  32489992 tttcccatggtggaaaagaattctcctttccca 32489960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 37511128 - 37511164
Alignment:
Q  78 tggaaaacaattctcctttcccatgttaaactccacc 114  Q
    |||||||  ||||||||||||||||||||||||||||    
T  37511128 tggaaaaggattctcctttcccatgttaaactccacc 37511164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 44022088 - 44022128
Alignment:
Q  67 ttttcccatggtggaaaacaattctcctttcccatgttaaa 107  Q
    ||||||||||||||||||||| |||||||| ||||| ||||    
T  44022088 ttttcccatggtggaaaacaactctccttttccatgctaaa 44022128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 49161810 - 49161850
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaac 108  Q
    ||||||||||||| ||||||||| ||||||||||| |||||    
T  49161810 tttcccatggtgggaaacaattcccctttcccatgctaaac 49161850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 6912195 - 6912123
Alignment:
Q  35 tgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaa 107  Q
    |||||| |||||||||||||| || | | | | |||||||||||||||||||| ||||| |||||||||||||    
T  6912195 tgttctttatttgatccaatgtttaagatttaatttcccatggtggaaaacaactctccattcccatgttaaa 6912123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 4789600 - 4789521
Alignment:
Q  34 atgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccac 113  Q
    |||||||| |||||||| ||||||  | ||||| ||||||||||||| |||||| || ||||||||||| ||||| ||||    
T  4789600 atgttctccatttgatctaatggtcaagaataactttcccatggtgggaaacaactcccctttcccatgctaaaccccac 4789521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 4820500 - 4820453
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  4820500 tttcccatggtggaaaacaatttccctttcccatgttaaaccccacct 4820453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 35262506 - 35262452
Alignment:
Q  60 aaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    ||||||| ||||||||||| | |||||||| |||||||||||| |||||||||||    
T  35262506 aaaataactttcccatggtaggaaacaattatcctttcccatgctaaactccacc 35262452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 4554744 - 4554656
Alignment:
Q  27 taaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||| ||||||||||| || ||| ||||||  ||| ||  |||| ||||||||||||||||| |||||||||||  ||||| ||||||    
T  4554744 taaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaattttcctttcccatactaaaccccacct 4554656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 42650803 - 42650763
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaac 108  Q
    |||||||||||| |||||||||| ||||||||||| |||||    
T  42650803 tttcccatggtgaaaaacaattcccctttcccatgctaaac 42650763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 10198287 - 10198225
Alignment:
Q  52 aatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    ||||||||||  ||| |||||||||||||||||  |||  |||||||||||||||||||||||    
T  10198287 aatggtttaagttaactttcccatggtggaaaaagattgacctttcccatgttaaactccacc 10198225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 30846474 - 30846545
Alignment:
Q  44 tttgatccaatggtttaaaa-taattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||||| ||||||| |||| ||||||||||||||||||||| ||||  ||||||||||| |||||| |||||    
T  30846474 tttgatctaatggttaaaaactaattttcccatggtggaaaa-aattagcctttcccatgctaaacttcacct 30846545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 37562362 - 37562295
Alignment:
Q  47 gatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    |||| ||||||| ||| | | ||||| ||||||| ||||||||||||||||||||| ||||| |||||    
T  37562362 gatctaatggttaaaattgactttcctatggtgggaaacaattctcctttcccatgctaaaccccacc 37562295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 38572284 - 38572221
Alignment:
Q  52 aatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||||||||  ||| ||||||||||||| |||  |||  ||||||||||||||||||||||||    
T  38572284 aatggtttaagttaactttcccatggtgggaaaagattgacctttcccatgttaaactccacct 38572221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 43972046 - 43972107
Alignment:
Q  26 gtaaaactatgttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaa 87  Q
    |||||| |||||||||||||| ||| ||||||| ||| ||| |||||||| |||| ||||||    
T  43972046 gtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaa 43972107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 40320389 - 40320459
Alignment:
Q  45 ttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    |||||| ||||||| |||| || ||| ||||||||| |||||| |||||||||||||| ||||| ||||||    
T  40320389 ttgatctaatggttgaaaaaaacttttccatggtgggaaacaactctcctttcccatgctaaaccccacct 40320459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 42607152 - 42607080
Alignment:
Q  43 atttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    |||||||| |||||   |||| || ||||||||||||| ||||||||| ||||||||||| ||||| ||||||    
T  42607152 atttgatctaatggacaaaaacaactttcccatggtgggaaacaattcccctttcccatgctaaaccccacct 42607080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 6729444 - 6729405
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaa 107  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  6729444 tttcccatagtggaaaacaattctcctttcccatgctaaa 6729405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 29060741 - 29060788
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||||||||||| ||||||||| ||||||||||| ||||| ||||||    
T  29060741 tttcccatggtgggaaacaattcccctttcccatgctaaaccccacct 29060788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 4270222 - 4270176
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaactccacc 114  Q
    ||||||||||||| |||  |||| |||||||||||||||||||||||    
T  4270222 tttcccatggtgggaaaggattcacctttcccatgttaaactccacc 4270176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 40257509 - 40257468
Alignment:
Q  72 ccatggtggaaaacaattctcctttcccatgttaaactccac 113  Q
    ||||||| | || |||||||||||||||||||||||||||||    
T  40257509 ccatggtcggaagcaattctcctttcccatgttaaactccac 40257468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 23634016 - 23634060
Alignment:
Q  71 cccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||||||||||||  |||  ||||||||||||||||||||||||    
T  23634016 cccatggtggaaaaggattgccctttcccatgttaaactccacct 23634060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 24996685 - 24996729
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaactcca 112  Q
    ||||||||||||| |||||| || ||||||||||| |||||||||    
T  24996685 tttcccatggtgggaaacaactcccctttcccatgctaaactcca 24996729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 32547781 - 32547709
Alignment:
Q  36 gttctctatttgatccaatggtttaaaataattttcccatggtggaaaacaattctcctttcccatgttaaac 108  Q
    ||||||||||||||| ||||| | | | ||| ||||| ||||||||||||||   |||||||||||| |||||    
T  32547781 gttctctatttgatctaatggctaacattaactttcctatggtggaaaacaagaatcctttcccatgctaaac 32547709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 32937 - 32890
Alignment:
Q  68 tttcccatggtggaaaacaattctcctttcccatgttaaactccacct 115  Q
    ||||| ||||||| |||  |||||||||||||||||||||||||||||    
T  32937 tttcctatggtgggaaaggattctcctttcccatgttaaactccacct 32890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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