View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_15 (Length: 518)
Name: NF1250_low_15
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 10 - 489
Target Start/End: Complemental strand, 54794880 - 54794401
Alignment:
| Q |
10 |
aagaatatggaacggggtgcattatatcagtcattgtttgattttccatcatttgcttttcaaaattatccatgatagacaggaacaattgaaaggctca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794880 |
aagaatatggaacggggtgcattatatcagtcattgtttgattttccatcatttgcttttcaaaattatccatgatagacaggaacaattgaaaggctca |
54794781 |
T |
|
| Q |
110 |
aggtctaacaaaccaaataccttttgatgcagtgattgcatagcacaggagcatcaacataggtcaggtgtgaagcttgagtttgtttgacatagactta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794780 |
aggtctaacaaaccaaataccttttgatgcagtgattgcatagcacaggagcatcaacataggtcaggtgtgaagcttgagtttgtttgacatagactta |
54794681 |
T |
|
| Q |
210 |
tcttatttgacaaacttgtaaactagtttgtggttactcttggtaaagcttacaacaaatatcttttatgtcattttatgttgatcagttagctcgcttc |
309 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794680 |
tcttatttgacaaacttgtaaattagtttgtggttactcttggtaaagcttacaacaaatatcttttatgtcattttatgttgatcagttagctcgctta |
54794581 |
T |
|
| Q |
310 |
ctaattttaacaaccacttgaatatcaatcaactagcttttcatttataaactttcaactgtagtctattagctactagtttaacttataaactacttaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54794580 |
ctaattttaacaaccacttgaatatcaatcaactagcttttcatttataaactttcaactatagtctattagctactagtttaacttataaactacttaa |
54794481 |
T |
|
| Q |
410 |
actattgccaaatagatactacagaatagagtgtgaataaactgaaccaagtcacacccttgactcatttatgggaacca |
489 |
Q |
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| T |
54794480 |
actattgccaaatagatactacagaatagagtgtgaataaactgaaccaagtcacacccttgactcatttatgggaacca |
54794401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 268 - 489
Target Start/End: Complemental strand, 52287320 - 52287099
Alignment:
| Q |
268 |
atatcttttatgtcattttatgttgatcagttagctcgcttcctaattttaacaaccacttgaatatcaatcaactagcttttcatttataaactttcaa |
367 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52287320 |
atatcttttatgtcattttatgttgatcagttagtttgctaactaattttaacaaccacttgaatatcaatcaactagcttttcatttataaactttcaa |
52287221 |
T |
|
| Q |
368 |
ctgtagtctattagctactagtttaacttataaactacttaaactattgccaaatagatactacagaatagagtgtgaataaactgaaccaagtcacacc |
467 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
52287220 |
ctgtagtccattagctactagtttaacttataaactacttaaactattgccaaatagatactacagaatggagtgtgaataaactgacccaagtcacacc |
52287121 |
T |
|
| Q |
468 |
cttgactcatttatgggaacca |
489 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
52287120 |
cttgactcatttatggaaacca |
52287099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 52287628 - 52287391
Alignment:
| Q |
25 |
ggtgcattatatcagtcattgtttgattttccatcatttgcttttcaaaattatccatgatagacaggaacaattgaaaggctcaaggtctaacaaacca |
124 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
52287628 |
ggtgtattatatcagtcattgtttgattt-ccatcatttgcttttcaaaattatccatga----caggaacaattgaaaggcccaaggtctaacaaacca |
52287534 |
T |
|
| Q |
125 |
aataccttttga-------tgcagtgattgcatagcacaggagcatcaacataggtcaggtgtgaagcttgagtttgtttgacatagacttatcttattt |
217 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52287533 |
aataccttttgaattttgatgcagtgattgcctagcacaggagcatcaacatatgtcaggtgtgaagcttgagtttgtttgacatagacctatcttattt |
52287434 |
T |
|
| Q |
218 |
gacaaacttgtaaactagtttgtggttactcttggtaaagctt |
260 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
52287433 |
gacaaacttgtaaactaatttgtggttactcgtggtaaagctt |
52287391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 802732 - 802575
Alignment:
| Q |
52 |
tttccatcatttgcttttcaaaattatccatgatagacaggaacaattgaaaggctcaaggtctaacaaaccaaataccttttgatgcagtgattgcata |
151 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| || | |||||| |||| ||| |
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| T |
802732 |
tttccatcttttgcttttcaaaattatccatgatagacaggagcaattgaaagcctcaagttctaacaaaccaaatagctgtcaatgcagcaattgaata |
802633 |
T |
|
| Q |
152 |
gcacaggagcatcaacataggtcaggtgtgaagcttgagtttgtttgacatagactta |
209 |
Q |
| |
|
|||||||||| ||| ||| || ||||| |||||||||||||||||||| ||||||| |
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| T |
802632 |
acacaggagcaccaatatatgtgaggtgcaaagcttgagtttgtttgacaaagactta |
802575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 268 - 425
Target Start/End: Complemental strand, 802468 - 802311
Alignment:
| Q |
268 |
atatcttttatgtcattttatgttgatcagttagctcgcttcctaattttaacaaccacttgaatatcaatcaactagcttttcatttataaactttcaa |
367 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
802468 |
atatctttcatgtcattt-atgtttatcagttagttcgccaattaattctaacaaccacttgaattgcaatcaactagcttttcatttataaactttcaa |
802370 |
T |
|
| Q |
368 |
ctgtagtctat--tagctactagtttaacttataaactacttaaactattgccaaataga |
425 |
Q |
| |
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|| || ||||| | |||| ||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
802369 |
ctataatctatagttgctattag-ttaacttataaactacttacactattgccaaataga |
802311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 369
Target Start/End: Original strand, 34618484 - 34618543
Alignment:
| Q |
310 |
ctaattttaacaaccacttgaatatcaatcaactagcttttcatttataaactttcaact |
369 |
Q |
| |
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||||||||| ||| ||||| |||||||||||||||| |||||| ||||| ||||||||| |
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|
| T |
34618484 |
ctaattttaccaaacactttaatatcaatcaactagtttttcagctataagctttcaact |
34618543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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