View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_16 (Length: 513)
Name: NF1250_low_16
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_16 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 14735073 - 14734713
Alignment:
| Q |
11 |
cataggaatcgaagtactagttgtttcttctgctatataccatgtcactctggaaatagttatgcctttagaaatggtgttggtcactaacgggatcttc |
110 |
Q |
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| T |
14735073 |
cataggaatcgaagtactagttgtttcttctactatacaccatgtcactctggaaatagttatgcctttagaaatggtgttggtcactaatgggatcttc |
14734974 |
T |
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| Q |
111 |
ctaatgatcattagtagtatttcatccaatatgtaaatattgaattttagtgtggagctatttcaagtacttagttgactaaataactttacgctcatgt |
210 |
Q |
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| T |
14734973 |
ctaatggtcattagtagtatttcatccaatatgtaaatattgaattttagtgcggagcta-ttcaagtatttagttaactaaataactttatgctcatgt |
14734875 |
T |
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| Q |
211 |
gatttcttcttttgtggtagtgatttccaagtgacaaggagtatgacagatggttatgtttaattagtttgacttaaataggacgtaatataacttgccg |
310 |
Q |
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| T |
14734874 |
gatctcttcttttgtggtagtgatttccaggtgacatggagtattacagatggttatgtttaattagtttgacttaaataggacgtactataacttgccg |
14734775 |
T |
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| Q |
311 |
gtgttgtaaaatatctaactatcccgacaaactcaaatatgtaagcctacgggcatgataatta |
374 |
Q |
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| T |
14734774 |
gtgttgtaaaatatctaactatcc--ataaactcaaatatgtaagcctacgggcatgataatta |
14734713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 484
Target Start/End: Complemental strand, 14733562 - 14733516
Alignment:
| Q |
438 |
ctacgatcgagaactaatactttaacactattttccaatgttaatgt |
484 |
Q |
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| T |
14733562 |
ctacgatcaagaactaatactttaacattattttctaacgttaatgt |
14733516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 161 - 374
Target Start/End: Complemental strand, 10648128 - 10647915
Alignment:
| Q |
161 |
tgtggagctatttcaagtacttagttgactaaataactttacgctcatgtgatttcttcttttgtggtagtgatttccaagtgacaaggagtatgacaga |
260 |
Q |
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| T |
10648128 |
tgtggagctatttcaaatactttgtagactaaataactctacactcgtgtgatctctttttttatggtagtgacttccatgtgacaagaaatatgacaga |
10648029 |
T |
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| Q |
261 |
tggttatgtttaattagtttgacttaaataggacgtaatataacttgccggtgttgtaaaatatctaactatcccgacaaactcaaatatgtaagcctac |
360 |
Q |
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| T |
10648028 |
tgtttatgtttaattagtttgacttaagtagaatttactctaatttgcaggtattgtaaaatatctaactaccctgacaagctcaaatatgtaagcctac |
10647929 |
T |
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| Q |
361 |
gggcatgataatta |
374 |
Q |
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| T |
10647928 |
agacatgataatta |
10647915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 161 - 374
Target Start/End: Original strand, 5344 - 5556
Alignment:
| Q |
161 |
tgtggagctatttcaagtacttagttgactaaataactttacgctcatgtgatttcttcttttgtggtagtgatttccaagtgacaaggagtatgacaga |
260 |
Q |
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||||||||||||||||||||||| | ||||| |||||| ||||||| ||||| ||||||||||||| ||||| ||| | |||||||||||||||||| | |
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| T |
5344 |
tgtggagctatttcaagtacttaatagactagataactctacgctcgggtgatctcttcttttgtggcagtgacttctaggtgacaaggagtatgacata |
5443 |
T |
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| Q |
261 |
tggttatgtttaattagtttgacttaaataggacgtaatataacttgccggtgttgtaaaatatctaactatcc-cgacaaactcaaatatgtaagccta |
359 |
Q |
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| T |
5444 |
tggttatgtttaattagtttgacttaagtaggacgt--cctaacttgcaggtgttgtaaaatatataactacccttgacaagcttgaatatgtaagccta |
5541 |
T |
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| Q |
360 |
cgggcatgataatta |
374 |
Q |
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| T |
5542 |
agggcaagataatta |
5556 |
T |
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