View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_17 (Length: 496)
Name: NF1250_low_17
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 4821441 - 4821386
Alignment:
| Q |
92 |
aaaaaagaaagacctacactaacttgtactttgacacataattaagattctaaact |
147 |
Q |
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| T |
4821441 |
aaaaaagaagggcctacactaacatgtactttgacacataattaagattataaact |
4821386 |
T |
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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 4831653 - 4831600
Alignment:
| Q |
260 |
gcaacaaatatgtgtcaaggttcagcaaaagagggaggagtggaaatctgccca |
313 |
Q |
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| T |
4831653 |
gcaacaaatatgtgttaacgttcagcaaaagcgggacgagttgaaatcttccca |
4831600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 6803248 - 6803183
Alignment:
| Q |
234 |
gataaaaatttatgtaaactcgatgcgcaacaaatatgtgtcaaggttcagcaaaagagggaggag |
299 |
Q |
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| T |
6803248 |
gataaaagtttatgtaaacttaatgcgcaacaaatatgtgttaacgttcggcaaaagtgggaggag |
6803183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 24602076 - 24602116
Alignment:
| Q |
9 |
gaaaaatatgaaccaaaaaaccatggaggtaatacgcaaag |
49 |
Q |
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| T |
24602076 |
gaaaaatatgaaccaaaaaaccatggaggaaatacgcaaag |
24602116 |
T |
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