View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_18 (Length: 492)

Name: NF1250_low_18
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_18
NF1250_low_18
[»] chr8 (18 HSPs)
chr8 (3-463)||(15750908-15751369)
chr8 (18-378)||(4506593-4506952)
chr8 (256-371)||(15000162-15000277)
chr8 (264-386)||(15076691-15076813)
chr8 (18-72)||(15169167-15169221)
chr8 (265-402)||(15214555-15214692)
chr8 (260-400)||(15066743-15066883)
chr8 (251-387)||(14348038-14348177)
chr8 (20-129)||(15047521-15047630)
chr8 (265-366)||(15052549-15052650)
chr8 (264-340)||(15171746-15171822)
chr8 (25-90)||(15066508-15066573)
chr8 (18-85)||(14999926-14999993)
chr8 (27-90)||(13033179-13033242)
chr8 (246-389)||(13033404-13033547)
chr8 (25-90)||(15214870-15214935)
chr8 (18-74)||(15164402-15164458)
chr8 (264-380)||(15168868-15168984)
[»] chr7 (2 HSPs)
chr7 (16-412)||(1618169-1618565)
chr7 (16-473)||(1626673-1627130)


Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 3 - 463
Target Start/End: Original strand, 15750908 - 15751369
Alignment:
Q  3 catctcgaataatatctataatctcttttcaaaatcattttcaagccaaa-gatagtgatgttgttgttgccactatgccaaaatctggaacaacatggt 101  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  15750908 catctcaaataaaatctataatctcttttcaaaatcattttcaagccaaaagatagtgatgttgttgttgcctctatgccaaaaactggaacaacatggt 15751007  T
Q  102 tgaaagccctaacctttgctattgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttcctt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15751008 tgaaagccctaacctttgctattgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttcctt 15751107  T
Q  202 ggaatcaaatgtttatgttgataccatttctcagtttcctaaatttgatatattaaacatggttgaaccaaggctttttggaactcacattccttttgct 301  Q
    |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15751108 ggaatcaaatgtgtatgttgataccatttcccagtttcctaagtttgatatattaaacatgattgaaccaaggctttttggaactcacattccttttgct 15751207  T
Q  302 tcattagctaagtcaattaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttatgtgtcatattggaattttatgaacaaaa 401  Q
    || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15751208 tccttagcaaagtcaatcaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttacgtgtcatattggaattttatgaacaaaa 15751307  T
Q  402 tttcattaaattttgattttcctacaataactatagaggatgattttgaaaggtattgtaag 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15751308 tttcattaaattttgattttcctacaataactatagaggatgattttgaaaggtattgtaag 15751369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 4506952 - 4506593
Alignment:
Q  18 ctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaacctt 117  Q
    |||||| |||||||||||||||||||||||||||||| | |||| |||||||||| |   | |||||||| || ||||| ||||||||||| || || ||    
T  4506952 ctataaactcttttcaaaatcattttcaagccaaagacaatgatattgttgttgctagcttaccaaaatccggcacaacttggttgaaagcactcacatt 4506853  T
Q  118 tgctattgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttccttggaatcaaatgtttat 217  Q
    ||| |||||||||||| ||| ||||||||| |||||  ||||||||||||||| ||  ||||| |||||||| ||||||| ||| ||||  |||||||||    
T  4506852 tgccattgttaatcgtcatcatttctcttccttagaagatcatccattacttaaattcaattcacatgaactagtgcctttctttgaatacaatgtttat 4506753  T
Q  218 gttgataccatttctcagtttcctaaatttgatatattaaacatggttgaaccaaggctttttggaactcacattccttttgcttcattagctaagtcaa 317  Q
    | || ||    |   |||  |  | || || |  ||| |||||||  |||||||||||||||||| |||||  |||| ||   |||| |||| |||||||    
T  4506752 ggtggtagtgatagccagagttttcaaattaacctatcaaacatgaatgaaccaaggctttttgg-actcatgttccattcttttcactagccaagtcaa 4506654  T
Q  318 ttaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttatgtgtc 378  Q
    |||| || ||||||||||| |||||||| ||||| || || ||||||||||||| ||||||    
T  4506653 ttaaagagtccaattgtaaaataatttatatatgtagaaatccttttgacacttttgtgtc 4506593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 371
Target Start/End: Original strand, 15000162 - 15000277
Alignment:
Q  256 aaacatggttgaaccaaggctttttggaactcacattccttttgcttcattagctaagtcaattaaggaatccaattgtaagataatttacatatgcagg 355  Q
    |||||||| ||||||||| |||||||||||||| ||||| |||  ||| || || ||||||||||||||||||||||||||||| ||||| ||||| |||    
T  15000162 aaacatggctgaaccaagactttttggaactcatattccatttaattccttggccaagtcaattaaggaatccaattgtaagatcatttatatatgtagg 15000261  T
Q  356 aacccttttgacactt 371  Q
    || ||  |||||||||    
T  15000262 aatccacttgacactt 15000277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 264 - 386
Target Start/End: Original strand, 15076691 - 15076813
Alignment:
Q  264 ttgaaccaaggctttttggaactcacattccttttgcttcattagctaagtcaattaaggaatccaattgtaagataatttacatatgcaggaacccttt 363  Q
    ||||||||||||||||||| ||||||||||| ||| ||||| | || ||||||||| | || ||||||||||||||| |||| ||| | || || || ||    
T  15076691 ttgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagactccaattgtaagatagtttatataagtagaaatccatt 15076790  T
Q  364 tgacacttatgtgtcatattgga 386  Q
    ||| |||| ||||||||||||||    
T  15076791 tgatacttttgtgtcatattgga 15076813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 15169221 - 15169167
Alignment:
Q  18 ctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgc 72  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15169221 ctataatctcttttcaaaatcattttcaagccaaagatagtgatattgttgttgc 15169167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 402
Target Start/End: Complemental strand, 15214692 - 15214555
Alignment:
Q  265 tgaaccaaggctttttggaactcacattccttttgcttcattagctaagtcaattaaggaatccaattgtaagataatttacatatgcaggaaccctttt 364  Q
    ||||||||||||||||||||||||||| || ||| |||| ||  | |||||| |||| || ||||||||||| |||||||| ||||| || ||||| |||    
T  15214692 tgaaccaaggctttttggaactcacatgccatttccttcgttgcccaagtcagttaaagagtccaattgtaaaataatttatatatgtagaaacccattt 15214593  T
Q  365 gacacttatgtgtcatattggaattttatgaacaaaat 402  Q
    || || | ||| |||||||||| ||| || ||||||||    
T  15214592 gatacatttgtatcatattggattttcatcaacaaaat 15214555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 260 - 400
Target Start/End: Original strand, 15066743 - 15066883
Alignment:
Q  260 atggttgaaccaaggctttttggaactcacattccttttgcttcattagctaagtcaattaaggaatccaattgtaagataatttacatatgcaggaacc 359  Q
    ||||||||||||||||||| |||||||||||| || ||| |||| ||  | ||||||||| | || ||||||||||| |||||||| ||||| || ||||    
T  15066743 atggttgaaccaaggctttatggaactcacatgccatttccttcgttgcccaagtcaattcaagagtccaattgtaaaataatttatatatgtagaaacc 15066842  T
Q  360 cttttgacacttatgtgtcatattggaattttatgaacaaa 400  Q
    | ||||| || | ||| |||||||||| ||| || ||||||    
T  15066843 catttgatacatttgtatcatattggactttcatcaacaaa 15066883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 251 - 387
Target Start/End: Complemental strand, 14348177 - 14348038
Alignment:
Q  251 atattaaacatggttgaaccaaggctttttggaactcacattccttttgcttcattagctaagtc---aattaaggaatccaattgtaagataatttaca 347  Q
    ||||||||| | |||||||||||| ||||||||| || ||||| |||   ||| || || || ||   |||||| || ||||||||||||||||||||||    
T  14348177 atattaaactttgttgaaccaaggatttttggaagtcgcattcttttccattctttggcaaaatctttaattaaagagtccaattgtaagataatttaca 14348078  T
Q  348 tatgcaggaacccttttgacacttatgtgtcatattggaa 387  Q
    |||| | |||||| |||||||||||||| |||||| ||||    
T  14348077 tatgtatgaacccatttgacacttatgtatcatataggaa 14348038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 15047521 - 15047630
Alignment:
Q  20 ataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaacctttg 119  Q
    |||| ||||||||||||| ||||| | |||||||| ||||||||| |  ||||| | ||||||||| | || || |||||||||||||||||  | ||||    
T  15047521 ataaactcttttcaaaattattttaaggccaaagagagtgatgttttcattgcctccatgccaaaagcaggcaccacatggttgaaagcccttgcatttg 15047620  T
Q  120 ctattgttaa 129  Q
    ||||||||||    
T  15047621 ctattgttaa 15047630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 15052549 - 15052650
Alignment:
Q  265 tgaaccaaggctttttggaactcacattccttttgcttcattagctaagtcaattaaggaatccaattgtaagataatttacatatgcaggaaccctttt 364  Q
    ||||||||||||||||||||||||||| || ||| |||| ||  | |||||| |||| || ||||||||||| |||||||| ||||| || ||||| |||    
T  15052549 tgaaccaaggctttttggaactcacatgccatttccttcgttgcccaagtcagttaaagagtccaattgtaaaataatttatatatgtagaaacccattt 15052648  T
Q  365 ga 366  Q
    ||    
T  15052649 ga 15052650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 15171822 - 15171746
Alignment:
Q  264 ttgaaccaaggctttttggaactcacattccttttgcttcattagctaagtcaattaaggaatccaattgtaagata 340  Q
    ||||||||||||||||||| ||||||||||| ||| ||||| | || ||||||||| | || |||||||||||||||    
T  15171822 ttgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagagtccaattgtaagata 15171746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 15066508 - 15066573
Alignment:
Q  25 ctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctgg 90  Q
    ||||||||||||| ||||||| ||||||||||||||| |||| |||||  | ||||||||||||||    
T  15066508 ctcttttcaaaataattttcatgccaaagatagtgatattgtagttgcatccatgccaaaatctgg 15066573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 14999926 - 14999993
Alignment:
Q  18 ctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaa 85  Q
    |||||| |||||||| |||| |||||||| ||||||||||||||||| |||||||  | |||||||||    
T  14999926 ctataaactcttttcgaaataattttcaaaccaaagatagtgatgttattgttgcatccatgccaaaa 14999993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 13033179 - 13033242
Alignment:
Q  27 cttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctgg 90  Q
    ||||||||||| | ||||| |||||||| | |||| ||||||||||  ||||||||||||||||    
T  13033179 cttttcaaaataaatttcatgccaaagacaatgatattgttgttgcatctatgccaaaatctgg 13033242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 389
Target Start/End: Original strand, 13033404 - 13033547
Alignment:
Q  246 ttgatatattaaacatggttgaaccaaggctttttggaactcacattccttttgcttcattagctaagtcaattaaggaatccaattgtaagataattta 345  Q
    ||||| ||| ||| ||| ||||||||||||||||||| ||||||||||| ||   ||| ||  | |||||  |||| || |||| |||||| || |||||    
T  13033404 ttgatgtatcaaatatgattgaaccaaggctttttggcactcacattccattcctttcgttgcccaagtcggttaaagagtccagttgtaaaatcattta 13033503  T
Q  346 catatgcaggaacccttttgacacttatgtgtcatattggaatt 389  Q
     ||||| || ||||| ||||| || | ||| |||||||||||||    
T  13033504 tatatgtagaaacccatttgatacatttgtatcatattggaatt 13033547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 15214935 - 15214870
Alignment:
Q  25 ctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctgg 90  Q
    ||||||||||||| ||||||| || ||||| |||||| ||||||||||  | || |||||||||||    
T  15214935 ctcttttcaaaataattttcatgctaaagacagtgatattgttgttgcatccattccaaaatctgg 15214870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 15164402 - 15164458
Alignment:
Q  18 ctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgcca 74  Q
    |||||| |||| |||||||| |||||||||| ||||| | || ||||||||||||||    
T  15164402 ctataaactctgttcaaaatgattttcaagctaaagacaatgctgttgttgttgcca 15164458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 380
Target Start/End: Complemental strand, 15168984 - 15168868
Alignment:
Q  264 ttgaaccaaggctttttggaactcacattccttttgcttcattagctaagtcaattaaggaatccaattgtaagataatttacatatgcaggaacccttt 363  Q
    ||||||||||| | ||||| ||||||||||| ||| ||||| | || ||||| ||| | || || |||||||||||| |||| ||| | || || || ||    
T  15168984 ttgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcgattcaagagtctaattgtaagatagtttatataagtagaaatccatt 15168885  T
Q  364 tgacacttatgtgtcat 380  Q
    ||| |||| ||||||||    
T  15168884 tgatacttttgtgtcat 15168868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 1618565 - 1618169
Alignment:
Q  16 atctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaacc 115  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  1618565 atctataatctcttttcaaaatgattttcaagctaaagatagtgatgttgttattgcctctatgccaaaatcaggaacaacatggttgaaagccctaacc 1618466  T
Q  116 tttgctattgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttccttggaatcaaatgttt 215  Q
    ||||| ||| |||||||  ||| ||| |||||  ||||||||||||||||||||| | ||||| |||||||| |  | |||| ||| ||||   || |||    
T  1618465 tttgcaattattaatcgccatcatttttcttccctagagaatcatccattacttaaaactaatcctcatgaattaatacctttctttgaatttcatattt 1618366  T
Q  216 atgttgataccatttctcagtttcctaaatttgatatattaaacatggttgaaccaaggctttttggaactcacattccttttgcttcattagctaagtc 315  Q
    ||||||||||| ||| ||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||  |||| |||||    
T  1618365 atgttgataccgtttgtcaatttcctaaagttgatctattaaacatgattgaaccaaggctttttggaactcatattccttttacttctctagccaagtc 1618266  T
Q  316 aattaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttatgtgtcatattggaattttatgaacaaaatttcattaaat 412  Q
    |||||| ||||||||||||||||||||||||||||| || ||||| |||||||||| |||||| ||||||||||| ||||||||||||  |||||||    
T  1618265 aattaaagaatccaattgtaagataatttacatatgtagaaacccatttgacacttttgtgtcttattggaatttcatgaacaaaattgaattaaat 1618169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 16 - 473
Target Start/End: Complemental strand, 1627130 - 1626673
Alignment:
Q  16 atctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaacc 115  Q
    ||||||||||||||||||||| || |||||||| || ||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  1627130 atctataatctcttttcaaaaccactttcaagctaaggatagtgatgtggttgttgccactgttccaaaatcaggaacaacatggttgaaagccctaacc 1627031  T
Q  116 tttgctattgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttccttggaatcaaatgttt 215  Q
    ||||| ||| |||||||  ||| ||||||||||||| | ||||||||||| |||||||||||| |||||||| | || |||| ||| || | |||| |||    
T  1627030 tttgccattattaatcgccatcatttctcttctttacataatcatccattgcttacatctaatcctcatgaattagttcctttctttgagttaaatattt 1626931  T
Q  216 atgttgataccatttctcagtttcctaaatttgatatattaaacatggttgaaccaaggctttttggaactcacattccttttgcttcattagctaagtc 315  Q
    ||  ||| | |  ||  || ||| ||||| ||||  ||||||||||| ||||||||||| ||||||||||||||||||||||   |||  |||| |||||    
T  1626930 atactgacatctcttggcaatttgctaaacttgacctattaaacatgattgaaccaaggatttttggaactcacattcctttccattctctagccaagtc 1626831  T
Q  316 aattaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttatgtgtcatattggaattttatgaacaaaatttcattaaatttt 415  Q
     ||||| || |||||||||||||||||||||||||| |||||||| |||||||||| |||||| ||||||||||| |||||||||||| ||||||||       
T  1626830 tattaaagagtccaattgtaagataatttacatatgtaggaacccatttgacacttttgtgtcttattggaatttcatgaacaaaattgcattaaatcaa 1626731  T
Q  416 gattttcctacaataactatagaggatgattttgaaaggtattgtaagtgatgatgtc 473  Q
      ||| ||||||  |||| ||||||||||||||||||  |||||| || ||| |||||    
T  1626730 tctttacctacatcaactttagaggatgattttgaaaaatattgtgagggattatgtc 1626673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University