View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_19 (Length: 485)

Name: NF1250_low_19
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_19
NF1250_low_19
[»] chr4 (15 HSPs)
chr4 (151-447)||(48684252-48684550)
chr4 (54-129)||(48684138-48684213)
chr4 (387-485)||(36569377-36569476)
chr4 (376-438)||(19674287-19674349)
chr4 (395-447)||(37370278-37370330)
chr4 (394-440)||(52632901-52632947)
chr4 (394-447)||(12865264-12865317)
chr4 (394-447)||(48316188-48316241)
chr4 (384-447)||(23254983-23255047)
chr4 (395-447)||(45043380-45043432)
chr4 (394-440)||(32157424-32157470)
chr4 (396-437)||(42150261-42150302)
chr4 (395-447)||(42236941-42236994)
chr4 (398-447)||(47631175-47631224)
chr4 (411-447)||(54041975-54042011)
[»] chr7 (8 HSPs)
chr7 (151-484)||(47420784-47421120)
chr7 (54-129)||(47420670-47420745)
chr7 (395-447)||(2735953-2736005)
chr7 (394-440)||(43988197-43988243)
chr7 (395-482)||(33698538-33698626)
chr7 (397-447)||(33800408-33800459)
chr7 (376-438)||(35594253-35594315)
chr7 (399-439)||(4041551-4041591)
[»] chr2 (7 HSPs)
chr2 (395-442)||(5185793-5185840)
chr2 (401-447)||(16803354-16803400)
chr2 (401-447)||(16842637-16842683)
chr2 (396-437)||(9367988-9368029)
chr2 (384-447)||(27892624-27892688)
chr2 (401-447)||(7293125-7293171)
chr2 (394-439)||(39730947-39730992)
[»] chr5 (6 HSPs)
chr5 (396-482)||(6231239-6231327)
chr5 (394-447)||(28613379-28613432)
chr5 (376-447)||(37367279-37367350)
chr5 (382-447)||(12005566-12005632)
chr5 (30-59)||(10370783-10370812)
chr5 (382-438)||(34912065-34912122)
[»] chr1 (7 HSPs)
chr1 (394-439)||(35395311-35395356)
chr1 (396-482)||(6222435-6222523)
chr1 (401-447)||(17180005-17180051)
chr1 (394-447)||(4861520-4861573)
chr1 (396-429)||(10462465-10462498)
chr1 (30-58)||(10924357-10924385)
chr1 (400-447)||(37071045-37071093)
[»] chr6 (3 HSPs)
chr6 (394-447)||(30496421-30496475)
chr6 (385-447)||(18289898-18289961)
chr6 (395-445)||(24163503-24163553)
[»] chr8 (3 HSPs)
chr8 (411-482)||(13637741-13637813)
chr8 (411-482)||(13738154-13738226)
chr8 (382-444)||(11943089-11943152)
[»] chr3 (9 HSPs)
chr3 (394-438)||(33863425-33863469)
chr3 (411-474)||(55006978-55007042)
chr3 (394-440)||(47498456-47498503)
chr3 (411-480)||(2032384-2032454)
chr3 (401-439)||(46970129-46970167)
chr3 (394-447)||(49032835-49032888)
chr3 (411-482)||(6955938-6956010)
chr3 (399-447)||(12062706-12062754)
chr3 (405-449)||(53219154-53219197)
[»] scaffold0009 (1 HSPs)
scaffold0009 (394-471)||(5855-5933)
[»] scaffold0581 (1 HSPs)
scaffold0581 (393-440)||(8937-8985)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 151 - 447
Target Start/End: Original strand, 48684252 - 48684550
Alignment:
Q  151 cacatcatgtactcctactgttttctttgttttagttgattaagttcttgcgaacagcatgtacaaaaatcaattagtaattaagtcaacgtttaaataa 250  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48684252 cacatcatgtactcctactattttctttgttttagttgattaagttcttgcgaacagcatgtacaaaaatcaattagtaattaagtcaacgtttaaataa 48684351  T
Q  251 taatgtaatagtagttattttaaatttacatgtattata--tatagtcgcacatttattacctcattaaaatatgacatttatattatgtaagggtgatt 348  Q
    |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48684352 taatgtaataatagttattttaaatttacatgtattatatatatagtcgcacatttattacctcattaaaatatgacatttatattatgtaagggtgatt 48684451  T
Q  349 atgtcatttactaagtaatatatattccttttttctcacttttcattcactttcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    |||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  48684452 atgtcatttactcagtaatatatattcctttcctctcactttccattcactttcactcataccaaacaactaaaaaatcatcttactttccatacactt 48684550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 48684138 - 48684213
Alignment:
Q  54 catattgtggtattattttttgtttgtttaatttcttgttgtcgagatctaagggatcaaccaaagcatacattag 129  Q
    ||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48684138 catatcgtgatattattttttgtttttttaatttcttgttttcgagatctaagggatcaaccaaagcatacattag 48684213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 485
Target Start/End: Complemental strand, 36569476 - 36569377
Alignment:
Q  387 cttttcattcactttcactcatatcaaacaactaaaaaatcatcttactttccattca-cttccatacattttcatttcttcaacaatcgttcctctcac 485  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||| || || ||||||| ||| |||| |||||||| ||||    
T  36569476 cttttctttcactttcactcatatcaaacaactaaacaatcatcttactttctatttatcttctatccactttcattccttaaacattcgttcctttcac 36569377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 19674349 - 19674287
Alignment:
Q  376 cttttttctcacttttcattcactttcactcatatcaaacaactaaaaaatcatcttactttc 438  Q
    |||| |||||||||| ||||| |||||||| ||| |||||||||||||||||||| |||||||    
T  19674349 ctttcttctcactttccattctctttcactaataccaaacaactaaaaaatcatcctactttc 19674287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 37370278 - 37370330
Alignment:
Q  395 tcactttcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||| ||||||    
T  37370278 tcactttcatttatatcaaacaactaaaaaatcatctcactttccactcactt 37370330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 440
Target Start/End: Original strand, 52632901 - 52632947
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaaaatcatcttactttcca 440  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  52632901 ttcactttcactaataccaaacaactaaaaaatcatctcactttcca 52632947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 12865264 - 12865317
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    |||||||||||| ||| ||||||||||||||||||||  |||||||| ||||||    
T  12865264 ttcactttcactaataccaaacaactaaaaaatcatcaaactttccactcactt 12865317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 48316241 - 48316188
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||| | ||||||    
T  48316241 ttcactttcactaataccaaacaactaaaaaatcatctcactttctactcactt 48316188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 23254983 - 23255047
Alignment:
Q  384 tcacttttcattcactttcactcatatcaaacaactaa-aaaatcatcttactttccattcactt 447  Q
    |||||||| | ||||||||||||| | ||| ||||||  ||||||||||||||||||||||||||    
T  23254983 tcactttttaatcactttcactcaaaccaagcaactatgaaaatcatcttactttccattcactt 23255047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 45043432 - 45043380
Alignment:
Q  395 tcactttcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    ||||||||| ||||  |||||||||||| |||||||| |||||||||||||||    
T  45043432 tcactttcattcattccaaacaactaaacaatcatctcactttccattcactt 45043380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 440
Target Start/End: Original strand, 32157424 - 32157470
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaaaatcatcttactttcca 440  Q
    |||||||||||||||| |||||||  |||||||||||| ||||||||    
T  32157424 ttcactttcactcataccaaacaatcaaaaaatcatctaactttcca 32157470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 42150261 - 42150302
Alignment:
Q  396 cactttcactcatatcaaacaactaaaaaatcatcttacttt 437  Q
    |||||||| ||||| ||||||||||||||||||||| |||||    
T  42150261 cactttcattcataccaaacaactaaaaaatcatctcacttt 42150302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 42236994 - 42236941
Alignment:
Q  395 tcactttcactcatatcaaacaactaaaa-aatcatcttactttccattcactt 447  Q
    ||||||||| ||||| |||||||| |||| |||||||| |||||||||||||||    
T  42236994 tcactttcattcataccaaacaacaaaaataatcatctcactttccattcactt 42236941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 47631224 - 47631175
Alignment:
Q  398 ctttcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    |||||| ||| | |||||||||||| |||||||||||||| |||||||||    
T  47631224 ctttcattcaaaccaaacaactaaataatcatcttacttttcattcactt 47631175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 54042011 - 54041975
Alignment:
Q  411 caaacaactaaaaaatcatcttactttccattcactt 447  Q
    |||||||||||| |||||||| |||||||||||||||    
T  54042011 caaacaactaaacaatcatctcactttccattcactt 54041975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 151 - 484
Target Start/End: Original strand, 47420784 - 47421120
Alignment:
Q  151 cacatcatgtactcctactgttttctttgttttagttgattaagttcttgcgaacagcatgtacaaaaatcaattagtaattaagtcaacgtttaaataa 250  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  47420784 cacatcatgtactcctggtgttttctttgttttagttgattaagttcttgcgaataacatgtacaaaaatcaattagtaattaagtcaacgtttaaataa 47420883  T
Q  251 taatgtaatagtagttattttaaatttacatgtattata--tatagtcgcacatttattacctcattaaaatatgacatttatattatgtaagggtgatt 348  Q
    |||||||||| || ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47420884 taatgtaataatacttattttaaatttacatttattatatatatagtcgcacatttattacctcattaaaatatgacatttatattatgtaagggtgatt 47420983  T
Q  349 atgtcatttactaagtaatatatattccttttttctcacttttcattcactttcactcatatcaaacaactaaaaaatcatcttactttccattcac-tt 447  Q
    |||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||    
T  47420984 atgtcatttactaagtaatatatatttctttcctctcacttttgattcactttcactcataccaaacaactaaaaaatcatctcactttccattcacttt 47421083  T
Q  448 ccatacattttcatttcttcaacaatcgttcctctca 484  Q
    | ||||| || |||| ||||||||||| |||||||||    
T  47421084 ctatacacttccattccttcaacaatctttcctctca 47421120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 47420670 - 47420745
Alignment:
Q  54 catattgtggtattattttttgtttgtttaatttcttgttgtcgagatctaagggatcaaccaaagcatacattag 129  Q
    ||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  47420670 catattgtggttttattttttgtttgtttaatttcttgtttttgagatctaaggcatcaaccaaagcatacattag 47420745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 2736005 - 2735953
Alignment:
Q  395 tcactttcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||| ||||||    
T  2736005 tcactttcactcataccaaacaaccaaaaaatcatctaactttccactcactt 2735953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 43988243 - 43988197
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaaaatcatcttactttcca 440  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  43988243 ttcactttcactaataccaaacaactaaaaaatcatctcactttcca 43988197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 482
Target Start/End: Original strand, 33698538 - 33698626
Alignment:
Q  395 tcactttcactcatatcaaacaactaaaaaatcatcttactttccattcac-ttccatacattttcatttcttcaacaatcgttcctct 482  Q
    ||||||||| | ||| ||||||||||||| ||||||| ||||||||||||| ||| |  || ||||||| |||||| |||| |||||||    
T  33698538 tcactttcatttataccaaacaactaaaatatcatctcactttccattcacattctactcactttcattccttcaataatctttcctct 33698626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 447
Target Start/End: Complemental strand, 33800459 - 33800408
Alignment:
Q  397 actttcactcatatcaaacaactaaaa-aatcatcttactttccattcactt 447  Q
    |||||||||| || ||||||||||||| |||||||| |||||||||||||||    
T  33800459 actttcactcctaacaaacaactaaaacaatcatctcactttccattcactt 33800408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 35594253 - 35594315
Alignment:
Q  376 cttttttctcacttttcattcactttcactcatatcaaacaactaaaaaatcatcttactttc 438  Q
    |||| |||| ||||| |||||||||||| | ||| |||||||||||| ||||||| |||||||    
T  35594253 ctttcttcttactttccattcactttcattaataccaaacaactaaataatcatcctactttc 35594315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 4041551 - 4041591
Alignment:
Q  399 tttcactcatatcaaacaactaaaaaatcatcttactttcc 439  Q
    ||||||| || |||||||||| |||||||||||||||||||    
T  4041551 tttcacttatttcaaacaacttaaaaatcatcttactttcc 4041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 395 - 442
Target Start/End: Complemental strand, 5185840 - 5185793
Alignment:
Q  395 tcactttcactcatatcaaacaactaaaaaatcatcttactttccatt 442  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  5185840 tcactttcactcatatcaaacaactaaacaatcatcttactttccatt 5185793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 447
Target Start/End: Complemental strand, 16803400 - 16803354
Alignment:
Q  401 tcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    ||||||||| ||||||||||||||||||||  |||||||||||||||    
T  16803400 tcactcataccaaacaactaaaaaatcatcacactttccattcactt 16803354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 447
Target Start/End: Complemental strand, 16842683 - 16842637
Alignment:
Q  401 tcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    ||||||||| ||||||||||||||||||||  |||||||||||||||    
T  16842683 tcactcataccaaacaactaaaaaatcatcacactttccattcactt 16842637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 9367988 - 9368029
Alignment:
Q  396 cactttcactcatatcaaacaactaaaaaatcatcttacttt 437  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  9367988 cactttcactcataccaaacaactaaaaaatcatctcacttt 9368029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 27892624 - 27892688
Alignment:
Q  384 tcacttttcattcactttcactcatatcaaacaactaa-aaaatcatcttactttccattcactt 447  Q
    |||||||| | |||||||||| || | ||||||||||  ||||||||||||||||||||||||||    
T  27892624 tcactttttaatcactttcacacaaaccaaacaactatgaaaatcatcttactttccattcactt 27892688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 447
Target Start/End: Complemental strand, 7293171 - 7293125
Alignment:
Q  401 tcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    ||||||||| ||||||||||||||||||||  |||||||| ||||||    
T  7293171 tcactcataccaaacaactaaaaaatcatcgcactttccactcactt 7293125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Complemental strand, 39730992 - 39730947
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaaaatcatcttactttcc 439  Q
    |||||| | ||||||| |||||||| ||||||||||||||||||||    
T  39730992 ttcactattactcataccaaacaaccaaaaaatcatcttactttcc 39730947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 482
Target Start/End: Original strand, 6231239 - 6231327
Alignment:
Q  396 cactttcactcatatcaaacaactaaaa-aatcatcttactttccattcac-ttccatacattttcatttcttcaacaatcgttcctct 482  Q
    |||||||||||||| |||||||| |||| |||||||| ||||||||||||| ||| |  |||||||||| ||||||||||| |||||||    
T  6231239 cactttcactcataccaaacaaccaaaaaaatcatctaactttccattcactttctactcattttcattccttcaacaatctttcctct 6231327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 28613379 - 28613432
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    |||||||||  ||||| ||||||||||||||||||||||||||| |||||||||    
T  28613379 ttcactttctgtcataccaaacaactaaaaaatcatcttacttttcattcactt 28613432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 37367279 - 37367350
Alignment:
Q  376 cttttttctcacttttcattcactttcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    ||||||||| ||||| |||||||||||| | ||||||||||| |||| ||| ||| |||||||  |||||||    
T  37367279 cttttttcttactttccattcactttcattaatatcaaacaattaaataattatcctactttcatttcactt 37367350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 447
Target Start/End: Complemental strand, 12005632 - 12005566
Alignment:
Q  382 tctcacttttcattcactttcactcatatcaaacaactaa-aaaatcatcttactttccattcactt 447  Q
    ||||||| | ||| |||||||||| ||| ||||||||||| |||||| ||| |||||||||||||||    
T  12005632 tctcactatccatgcactttcacttataccaaacaactaaaaaaatcgtctaactttccattcactt 12005566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 10370812 - 10370783
Alignment:
Q  30 gggccggcccatttgacacctctacatatt 59  Q
    ||||||||||||||||||||||||||||||    
T  10370812 gggccggcccatttgacacctctacatatt 10370783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 34912122 - 34912065
Alignment:
Q  382 tctcacttttcattcactttcactcatatcaaacaactaa-aaaatcatcttactttc 438  Q
    ||||||||| ||||||| ||||||  || ||||||||||| |||||||||||||||||    
T  34912122 tctcactttccattcaccttcactattaccaaacaactaaaaaaatcatcttactttc 34912065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 439
Target Start/End: Complemental strand, 35395356 - 35395311
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaaaatcatcttactttcc 439  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||    
T  35395356 ttcactatcactcataccaaacaactaaaaaatcatcttactttcc 35395311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 482
Target Start/End: Original strand, 6222435 - 6222523
Alignment:
Q  396 cactttcactcatatcaaacaactaaaa-aatcatcttactttccattcac-ttccatacattttcatttcttcaacaatcgttcctct 482  Q
    ||||||||||| || ||||||||||||| |||||||| |||||||| |||| |||  | || ||||||||||| ||||||| |||||||    
T  6222435 cactttcactcctaacaaacaactaaaacaatcatctcactttccaatcactttctctccactttcatttctttaacaatctttcctct 6222523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 447
Target Start/End: Complemental strand, 17180051 - 17180005
Alignment:
Q  401 tcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    ||||| ||| ||||||||||||||||||||  |||||||||||||||    
T  17180051 tcacttataccaaacaactaaaaaatcatcacactttccattcactt 17180005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 4861520 - 4861573
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    |||||||||| | ||| |||||||||||| |||||||| |||||| ||||||||    
T  4861520 ttcactttcatttataacaaacaactaaacaatcatctcactttctattcactt 4861573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 429
Target Start/End: Original strand, 10462465 - 10462498
Alignment:
Q  396 cactttcactcatatcaaacaactaaaaaatcat 429  Q
    |||||||||||||| |||||||||||||||||||    
T  10462465 cactttcactcataccaaacaactaaaaaatcat 10462498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 10924357 - 10924385
Alignment:
Q  30 gggccggcccatttgacacctctacatat 58  Q
    |||||||||||||||||||||||||||||    
T  10924357 gggccggcccatttgacacctctacatat 10924385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 37071093 - 37071045
Alignment:
Q  400 ttcactcatatcaaacaactaa-aaaatcatcttactttccattcactt 447  Q
    |||||||| | ||||||||||  ||||||||||||||||||||||||||    
T  37071093 ttcactcaaaccaaacaactatgaaaatcatcttactttccattcactt 37071045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 30496475 - 30496421
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaa-aatcatcttactttccattcactt 447  Q
    |||||||||| ||||| ||||||||||||| |||||||| |||||||||||||||    
T  30496475 ttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactt 30496421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 447
Target Start/End: Complemental strand, 18289961 - 18289898
Alignment:
Q  385 cacttttcattcactttcactcatatcaaacaactaa-aaaatcatcttactttccattcactt 447  Q
    ||||||| | ||||||||||||| | ||||||||||  |||||||||||||||| |||||||||    
T  18289961 cactttttaatcactttcactcaaaccaaacaactatgaaaatcatcttacttttcattcactt 18289898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 445
Target Start/End: Complemental strand, 24163553 - 24163503
Alignment:
Q  395 tcactttcactcatatcaaacaactaaaaaatcatcttactttccattcac 445  Q
    ||||||||| ||||  |||||||||||| |||||||| |||||||||||||    
T  24163553 tcactttcattcattccaaacaactaaacaatcatctcactttccattcac 24163503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 482
Target Start/End: Original strand, 13637741 - 13637813
Alignment:
Q  411 caaacaactaaaaaatcatcttactttccattcac-ttccatacattttcatttcttcaacaatcgttcctct 482  Q
    |||||||||||| |||||||| ||||||||||||| ||| |  || ||||||| ||||||||||| |||||||    
T  13637741 caaacaactaaataatcatctcactttccattcactttctacccactttcattccttcaacaatctttcctct 13637813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 482
Target Start/End: Original strand, 13738154 - 13738226
Alignment:
Q  411 caaacaactaaaaaatcatcttactttccattcac-ttccatacattttcatttcttcaacaatcgttcctct 482  Q
    |||||||||||| |||||||| ||||||||||||| ||| |  || ||||||| ||||||||||| |||||||    
T  13738154 caaacaactaaataatcatctcactttccattcactttctacccactttcattccttcaacaatctttcctct 13738226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 11943152 - 11943089
Alignment:
Q  382 tctcacttttcattcactttcactcatatcaaacaactaa-aaaatcatcttactttccattca 444  Q
    ||||||| | ||| |||||||||| ||| ||||||||||| |||||||||| ||||||||||||    
T  11943152 tctcactatccatgcactttcacttataccaaacaactaaaaaaatcatctaactttccattca 11943089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 33863425 - 33863469
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaaaatcatcttactttc 438  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||    
T  33863425 ttcactttcattcatatcaaacaactaaacaatcatctcactttc 33863469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 474
Target Start/End: Original strand, 55006978 - 55007042
Alignment:
Q  411 caaacaactaaaaaatcatcttactttccattcac-ttccatacattttcatttcttcaacaatc 474  Q
    |||||||||||| |||||||| ||||||||||||| ||| |  |||||||||| |||||||||||    
T  55006978 caaacaactaaataatcatctcactttccattcactttctactcattttcattccttcaacaatc 55007042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 440
Target Start/End: Original strand, 47498456 - 47498503
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaa-aaatcatcttactttcca 440  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  47498456 ttcactttcacttatatcaaacaactaaataaatcatctcactttcca 47498503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 480
Target Start/End: Original strand, 2032384 - 2032454
Alignment:
Q  411 caaacaactaaaaaatcatcttactttccattcac-ttccatacattttcatttcttcaacaatcgttcct 480  Q
    |||||||||||| |||||||| | ||||||||||| ||| |  |||||||||| ||||||||||| |||||    
T  2032384 caaacaactaaataatcatctcattttccattcactttctactcattttcattccttcaacaatctttcct 2032454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 46970167 - 46970129
Alignment:
Q  401 tcactcatatcaaacaactaaaaaatcatcttactttcc 439  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  46970167 tcactcataccaaacaaccaaaaaatcatcttactttcc 46970129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 49032835 - 49032888
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    ||||||||||| | || |||||||||||| |||||||| |||||||| ||||||    
T  49032835 ttcactttcacccctaccaaacaactaaacaatcatctcactttccactcactt 49032888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 482
Target Start/End: Original strand, 6955938 - 6956010
Alignment:
Q  411 caaacaactaaaaaatcatcttactttccattcac-ttccatacattttcatttcttcaacaatcgttcctct 482  Q
    |||||||||||| ||||||||  |||||||||||| ||| |  || ||||||| ||||||||||| |||||||    
T  6955938 caaacaactaaataatcatctctctttccattcactttctactcactttcattccttcaacaatctttcctct 6956010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 447
Target Start/End: Original strand, 12062706 - 12062754
Alignment:
Q  399 tttcactcatatcaaacaactaaaaaatcatcttactttccattcactt 447  Q
    ||||||| || |||||||||  ||||||||||||||||||| |||||||    
T  12062706 tttcacttatttcaaacaacccaaaaatcatcttactttcctttcactt 12062754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 449
Target Start/End: Complemental strand, 53219197 - 53219154
Alignment:
Q  405 tcatatcaaacaactaaaaaatcatcttactttccattcacttcc 449  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||    
T  53219197 tcatatcaaacaactaaaaaatcatcaaacttt-cattcacttcc 53219154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 5855 - 5933
Alignment:
Q  394 ttcactttcactcatatcaaacaactaaaaaatcatcttactttccattcac-ttccatacattttcatttcttcaaca 471  Q
    |||||| ||||| ||| |||||||| ||||||||||||||||||| | || | |||||| || ||||||||||| ||||    
T  5855 ttcactatcacttataccaaacaacaaaaaaatcatcttactttctactctctttccattcactttcatttcttaaaca 5933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 440
Target Start/End: Complemental strand, 8985 - 8937
Alignment:
Q  393 attcactttcactcatatcaaacaactaaaa-aatcatcttactttcca 440  Q
    ||||||||||||||||||||||| ||||||| |||||| | ||||||||    
T  8985 attcactttcactcatatcaaactactaaaacaatcatttcactttcca 8937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University