View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_2 (Length: 700)
Name: NF1250_low_2
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Complemental strand, 43578426 - 43577984
Alignment:
| Q |
16 |
atcaatgttgtctacataaaagtgtcttgttcaaagatatgaaaaataataaatcacataattcttgttaactcaagacaattcagtcatccgtttctta |
115 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43578426 |
atcaatgttgtctacataaaagtgtcttgtccgaagatatgagaaataataaatcacataattcttgttaactcaagacaattcagtcatccgtttctta |
43578327 |
T |
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| Q |
116 |
acctcaccaatgagcaagatcataattcttaaaaaccaaagcaaccaattgataatctatttccaaccaaagagagattcatccctttttcgaagctatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43578326 |
acctcaccaatgagcaagatcataattcttaaaaaccaaagcaaccaattgataatctatttccaaccaaagagagattcatccctttttcgaagctatc |
43578227 |
T |
|
| Q |
216 |
tcaattgcatacctagctcaattaactctgcatagaaagcagtaaacacatttaaatttttagcaaaacaacctacaacaacgttgttatctctaaaaat |
315 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43578226 |
tcaattgcatacctggctcaattaactctgcatagaaagcagtaaacacatttaaatttttagcaaaacaacctacaacaacgttgttatctctaaaaat |
43578127 |
T |
|
| Q |
316 |
accaacactagcatctgatctaagacaaccttttgttgtgttgtcaatattgcatttgatccaagagaaaatagaaggatggtatatataacctactgtt |
415 |
Q |
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| T |
43578126 |
accaacactagcatctgatctaagacaatcttttgttgtgttgtcaatattgcatttgatccaagagaaaatagaaggatggtatatataacctactgtt |
43578027 |
T |
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| Q |
416 |
atcgactaaaatgaatgttttttaacgaaaacgcaaaaacttt |
458 |
Q |
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| T |
43578026 |
accgactaaaatgaatgttttttaaagaaaacgcaaaaacttt |
43577984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 456 - 633
Target Start/End: Complemental strand, 43577864 - 43577687
Alignment:
| Q |
456 |
tttgagtctcgcagtaggccctttgtaatttgtacagtatatgtaggtgacgagtcacgagagtaacaatcagacaaacttgattagtaagagacgacta |
555 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43577864 |
tttgagtctcgcagtaggccctttgtaatttgtacagtatatgtaggtgacgagtcacgagagtaacaatcagacaaatttgattagtaagagacgacta |
43577765 |
T |
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| Q |
556 |
ggaccttattctagtttctaggattaagtggacccttaaagaaaatgatttagttgatttggtttctgaaagcgaaag |
633 |
Q |
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| T |
43577764 |
gaaccttattctagtttctaggattaagtggacccttaaagaaaatgatttagttgatttggtttctgaaagcgaaag |
43577687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 8859799 - 8859712
Alignment:
| Q |
136 |
cataattcttaaaaaccaaagcaaccaattgataatctatttccaaccaaagagagattcatcc-ctttttcgaagctatctcaattg |
222 |
Q |
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|||||||||| ||| | |||| |||||||||| ||| | |||| ||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
8859799 |
cataattctttaaagcaaaagtaaccaattgagaatttgtttcaaaccaaagagagattcaaccatttttttaaagctatctcaattg |
8859712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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