View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1250_low_20 (Length: 475)
Name: NF1250_low_20
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 100 - 471
Target Start/End: Complemental strand, 8954348 - 8953974
Alignment:
| Q |
100 |
ccccagccagttagctaattacaaagatgagcatttgtgtgtgtgagagagagagcatgacaatgcattcatggaacaactttcttcattattttcgttc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8954348 |
ccccagccagttagctaattacaaagatgagcatttgtgtgtg--agaaagagagcatgacaatgcattcatggaacaactttcttcattattttcgttc |
8954251 |
T |
|
| Q |
200 |
ctttgtttacttaacagaagnnnnnnnntaataataaagtgttgtataagatgataattg-----gtataaatatggctgattaatctatgatgatatcg |
294 |
Q |
| |
|
|||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
8954250 |
ctttgtttacttaacataagaaaaaaaaaattaataaagtgttgtataagatgataattggctatgtataaatatggctgattaatcaatgatgatatcg |
8954151 |
T |
|
| Q |
295 |
atatatacatgtcactttttgtttgttccatgtaaagnnnnnnnnntaaacgagccacataaagcctatgcatcattaaatctaattatatcactcattt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8954150 |
atatatacatgtcactttttgtttgttccatgtaaagacaaaaaaataaacgagccacataaagcctatgcatcattaaatctaattatatcactcattt |
8954051 |
T |
|
| Q |
395 |
gggtgtggtctagtgattgatttaaaattttagagtacgttctctaaaaatctcatgttcgattccctatgatacta |
471 |
Q |
| |
|
|| | ||| ||||| |||| ||||||||||| ||||| ||| ||||||||| |||||||||||||||| | |||||| |
|
|
| T |
8954050 |
ggctttggcctagtcattggtttaaaatttttgagtatgttgtctaaaaatttcatgttcgattccctctaatacta |
8953974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University