View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1250_low_22 (Length: 459)
Name: NF1250_low_22
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 143 - 430
Target Start/End: Complemental strand, 44624451 - 44624165
Alignment:
| Q |
143 |
tgtacattaatatactaatctatcattagcaataccatattagttttaggtttaaccctttagttatggataaaaatacaagagnnnnnnncacttaaga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44624451 |
tgtacattaatatactaatctatcattagcaataccatattagttttaggtttaaccctttagttatggataaaaatacaagagtttttttcacttaaga |
44624352 |
T |
|
| Q |
243 |
gattctaaaaatgttcaagtgtgaaaagtataatccaaattaatttgacannnnnnnnnnnnnnnnnnnnnnncgcgcgcgtttgatatggaaattgtac |
342 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44624351 |
gattctaaaaatgttcaagggtgaaaagtataatccaaattaatttgacagtgtgtgtatgagtgtgtgtgcgcgcgcgcgtttgatatggaaattgtac |
44624252 |
T |
|
| Q |
343 |
aagcttttcaacttgactaggatatgctgcattaacatcattaacnnnnnnnnnctaatatatagatctggttattaaaaatatcaac |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44624251 |
aagcttttcaacttgactaggatatgctgcattaacatcattaac-aaaaaaaactaatatatagatctggttattaaaaatatcaac |
44624165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 44624537 - 44624461
Alignment:
| Q |
9 |
atcataggaattaaaaaagatatattctaacagtttaaagtcgatatagaaccttaactgaatcgttggagtagtgt |
85 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
44624537 |
atcataggaattcaaaaagatatattctaacagtttaaagtcgatataaaaccttaactgaatcattggagtagtgt |
44624461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 44950907 - 44950985
Alignment:
| Q |
144 |
gtacattaatatactaatctatcattagcaataccatattagttttaggtttaaccctttagttatggataaaaatacaagag |
226 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| ||||||| |||| || ||||| |||||||||||| |||||| |
|
|
| T |
44950907 |
gtacattaatatactaatctatcattaccagtaccatat---ttttaggattaaacc-ttagtaatggataaaaatgcaagag |
44950985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 386
Target Start/End: Complemental strand, 45342335 - 45342290
Alignment:
| Q |
341 |
acaagcttttcaacttgactaggatatgctgcattaacatcattaa |
386 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
45342335 |
acaagcttttcaacttgactaagatatactacattaacatcattaa |
45342290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University