View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_26 (Length: 439)
Name: NF1250_low_26
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 29 - 428
Target Start/End: Complemental strand, 12761406 - 12761007
Alignment:
| Q |
29 |
attcttctctttgcttctaacaatccacttcaaattatttccacaaacaccataatcatcaagcattccgacataattaaccctagtattgaacctaatc |
128 |
Q |
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| T |
12761406 |
attcttctctttgcttctaacaatccacttcaaattatttccacaaacaccataatcatcaagcattccaacataattaaccctagtattgaaccttatc |
12761307 |
T |
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| Q |
129 |
atctctcttaacccaaaccattcacaaaaatcttttagatacataagtatttcaacatggccagggaacctcctcatgtctctacctttcttggtagaaa |
228 |
Q |
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| T |
12761306 |
atctctcttaacccaaaccattcacaaaaatcttttagatacataagtatttcaacatgtccagggaacctcctcatgtctctacctttcttggtagaaa |
12761207 |
T |
|
| Q |
229 |
atggaaaatctgtgaaccccatgacttctcttggagactgtgttcttaaagagttatagatactgctatgaacttttagaaaagggtttctacctaaagg |
328 |
Q |
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| T |
12761206 |
atggaaaatctgtgaaccccatgacttctcttggagattgtgttcttaaagagttatagatactgctatgaacttttagaaaagggtttctacctaaagg |
12761107 |
T |
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| Q |
329 |
atcttcaccttctatatttttatcatcatataaccattgtcctccaatgtcatgattttgttctagcacaattactttgtgaccttcttttcttatctct |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12761106 |
atcttcaccttctatatttttatcatcatataaccattgtcctccaatgtcatgattttgttctagcacaattactttatgaccttcttttcttatctct |
12761007 |
T |
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