View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_28 (Length: 429)
Name: NF1250_low_28
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 162 - 402
Target Start/End: Original strand, 38371855 - 38372095
Alignment:
| Q |
162 |
aactgatgtagccgacactttgtttgatggtggcaaaggtggttttattttcttcaaggtttgggttatgagaccgttaaagaattttggtgttttttat |
261 |
Q |
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| T |
38371855 |
aactgatgtagccgacactttgtttgatggtggcaaaggtggttttattttcttcaaggtttgggttatgagaccgttaaagaattttggtgttttttat |
38371954 |
T |
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| Q |
262 |
agtacattgcaatgcaaggggtccaccccaacaaatatctgtttggacgttattacccttttgttaggagtatatttagggaagttgccactgtgttggg |
361 |
Q |
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| T |
38371955 |
agtacattgcaatgcaaggggtccaccccaacaaatatctgtttggacgttattacccttttgttaggagtatatttagggaagttgccactgtgttggg |
38372054 |
T |
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| Q |
362 |
tcccattggcggttgtgtgtgtcgttaggcagagcagaatg |
402 |
Q |
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| T |
38372055 |
tcccattggcggttgtgtgtgtcgttaggcagaacagaatg |
38372095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 38371708 - 38371834
Alignment:
| Q |
9 |
agcataggcttaaaagaaacaaagtggagaaacagtggtgcttcattctgattgaagacgataatgcgtaatgcaccgctgcaattgtcagctccggtaa |
108 |
Q |
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| T |
38371708 |
agcataggcttaaaagaaacaaagtggagaaacggtggtgcttcattctgattgaagacgataatgcgtaatgcaccgccgcaattgtcagctccggtaa |
38371807 |
T |
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| Q |
109 |
attcggagaccagggaaaatagttgac |
135 |
Q |
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| T |
38371808 |
attcggagaccagcgaaaatagttgac |
38371834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 38365671 - 38365729
Alignment:
| Q |
9 |
agcataggcttaaaagaaacaaagtggagaaacagtggtgcttcattctgattgaagac |
67 |
Q |
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| T |
38365671 |
agcataagcttaaaagaaacaagacggagacacggtggtgcttcattctgattgaagac |
38365729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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