View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1250_low_3 (Length: 679)
Name: NF1250_low_3
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-135; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 177 - 455
Target Start/End: Complemental strand, 1520054 - 1519779
Alignment:
| Q |
177 |
aaagaaaaaatgcatgaattttatgaagtgtgtgtatttctaatttttagccttaattacaaatactagtacttgttagtttttaatgctccatagtgaa |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1520054 |
aaagaaaaaatgcatgaattttatgaagtgtgtgtatttctaattcttagccataattacaaatacta---cttgttagtttttaatgctccatagtgaa |
1519958 |
T |
|
| Q |
277 |
aaagttgtttatgaaaaatatttactccatgacacgacacacaaacttggattgcctaaattagtgtctgtgtctattaatctattggttgaaggtattt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
1519957 |
aaagttgtttatgaaaaatatttactccatgacacgacacacaaacttggattgcctaaattagtgtctgtgtgtattaatctattggttgaaaatattt |
1519858 |
T |
|
| Q |
377 |
atcttggtggttgaaagtattatatctagattgttagattaatcgatcagctgaggtaagtctagagatgcataggcaa |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1519857 |
atcttggtggttgaaagtattatatctagattgttagattaatcgatcagctgaggtaagtctagagatgcataggcaa |
1519779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 520 - 628
Target Start/End: Complemental strand, 1519681 - 1519572
Alignment:
| Q |
520 |
gcctcttcagcataattagatatacttatgtgtagattaacaaataaaccatagtcgaattgagtgaggaaaaaactt-gcatttaagtgagcattcgag |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1519681 |
gcctcttcagcataattagatatacttatgtgtagattaacaattaaaccatagtcgaattgagtgaggaaaaaacttcgcatttaagtgagcattcgag |
1519582 |
T |
|
| Q |
619 |
ttagaataat |
628 |
Q |
| |
|
|||||||||| |
|
|
| T |
1519581 |
ttagaataat |
1519572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 1520203 - 1520124
Alignment:
| Q |
29 |
acttctttcctcctggaagttctaaaacatggctacaacttcatttttacggtaagtttctttattgtgaatttggatga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1520203 |
acttctttcctcctggaagttctaaaacatggctacaacttcatttttacggtaagtttctttagtgtgaatttggatga |
1520124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 1524169 - 1524106
Alignment:
| Q |
29 |
acttctttcctcctggaagttctaaaacatggctacaacttcatttttacggtaagtttcttta |
92 |
Q |
| |
|
|||| |||||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
1524169 |
acttttttccttttggaaattctaaaacgtggctacaacttcatttttacggtaagtttattta |
1524106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 1516006 - 1515948
Alignment:
| Q |
29 |
acttctttcctcctggaagttctaaaacatggctacaacttcatttttacggtaagttt |
87 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| || ||||| ||||| |||||| |||| |
|
|
| T |
1516006 |
acttctttcctcttggaagttctaaaacgtggatataacttaattttcacggtacgttt |
1515948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 16644431 - 16644368
Alignment:
| Q |
29 |
acttctttcctcctggaagttctaaaacatggctacaacttcatttttacggtaagtttcttta |
92 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16644431 |
acttttttccttttggaagttctaaaacgtggctacaacttcatttttacggtaagtttcttta |
16644368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University