View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_30 (Length: 413)
Name: NF1250_low_30
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 54277869 - 54277699
Alignment:
| Q |
10 |
aagaatatccatgaccatgcctaaaccctaaccaaagagaacaagcaagcaatacacaggctaccttgttcccctgattcctaataagcaagcaattgaa |
109 |
Q |
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| T |
54277869 |
aagaatatccatgaccatgcctaaaccctaaccaaagagaacaagcaagcaatacacaggctaccttgttcccctgattcctaataagcaagcaattgaa |
54277770 |
T |
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| Q |
110 |
atgtctaatcaaagaaagacaaaataattgaaaat-----tggtaatcatcagccaagcatattctccaat |
175 |
Q |
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| T |
54277769 |
atgtctaatcaaagaaagacaatataattgaaaattagtatggtaatcatcagccaagcatattctccaat |
54277699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 199 - 322
Target Start/End: Complemental strand, 54277631 - 54277508
Alignment:
| Q |
199 |
agagaatagagaaattgcttcttacttacagtatgacattctccaagatgcatacctcgtcaacattaacataatgcgaacaaacattacactcgacaag |
298 |
Q |
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| T |
54277631 |
agagaatagagaaattgcttcttacttacagtatgacattctccaagatgcatacctcgtcaacattaacataatgcgaacaaacattacactcgacaag |
54277532 |
T |
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| Q |
299 |
atttgggtaaataccaatgcccta |
322 |
Q |
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| T |
54277531 |
atttgggtaaataccaatgcccta |
54277508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 52472178 - 52472265
Alignment:
| Q |
325 |
tgttgcctatgttttgatatgtctctattttcctttatgctgagagcttctcaacatatttttccaattcaccacgacctttctgatg |
412 |
Q |
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| T |
52472178 |
tgttgcctatgttttgatatgtctctattttcctttatgcttagagcttctcaacatatttttccaattcaccacgacctttccgatg |
52472265 |
T |
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