View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_31 (Length: 412)
Name: NF1250_low_31
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 36170611 - 36170980
Alignment:
| Q |
13 |
aatatacaggcgccaattgcatcattaccaactatatacagtaggnnnnnnnnnnctaaataaattaagaatcgttggcattttcatggaaacatgttac |
112 |
Q |
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| T |
36170611 |
aatatacaggcgccaattgcgtcattaccaactatatacagtaggaaaaaaaaa-ctatataaattaagaatcattggcattttcatggaaacatgttac |
36170709 |
T |
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| Q |
113 |
taagtgatgccctcacccgccatgacattcaaccacctggtttttcaaacttgaaaatctgcaaaactgcttcaagtgcagaaacattccaactctcaac |
212 |
Q |
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| T |
36170710 |
taagtgacgccctcacccgccatgacattcaaccacctggtttttcaaacttgaaaatctgcaaaactgcttcaagtgcagaaacattccaactctcaac |
36170809 |
T |
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| Q |
213 |
atgccgaacgatctgtcaaacaaaaatgttttaaccactagttaacatggatttcaaatcacattatgagtggaaagttttgaggcaaagaggcattttg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170810 |
atgccgaacgatctgtcaaacaaaaatgttttaaccactagttgacatggatttcaaatcacattatgagtggaaagttttgaggcaaagaggcattttg |
36170909 |
T |
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| Q |
313 |
attctgactttgaaatcttcattcaattcataagaagtgcttccatcaatagcaatcagaggcctccaagg |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170910 |
attctgactttgaaatcttcattcaattcataagaagtgcttccatcaatagcaatcagaggcctccaagg |
36170980 |
T |
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