View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_32 (Length: 407)
Name: NF1250_low_32
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 30 - 391
Target Start/End: Complemental strand, 41066308 - 41065947
Alignment:
| Q |
30 |
gtctcatccaccatgcaacccgcatgcacgactggatcgctgataatctccgcgcgtgtggcggcacgtaccaaacatgcatctgcgccgttcctttcct |
129 |
Q |
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| T |
41066308 |
gtctcatccaccatgcaaaccgcatgcacgactggatcgctgataatctccgcgcgtgtggcggcacgtaccaaacatgcatctgcgccgttcctttcct |
41066209 |
T |
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| Q |
130 |
cgccagaaaacagtgtctcgtgactgtcacgtgcgatccaaagaacctcgaacacatcctcaaactccggttcgacaattacccaaaaggtccaacatgg |
229 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066208 |
cgccagaaaacagtgtctcgtgactgtcacgtgtgatccaaagaacctcgaacacatcctcaaactccggttcgacaattacccaaaaggtccaacatgg |
41066109 |
T |
|
| Q |
230 |
cagtcagtgtttcatgacttactcggagaaggtatatttaactcagatggtgacatgtggctgttccagcgtaaaaccgccgcactagagttcaccactc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41066108 |
cagtcagtgtttcatgacttactcggagaaggtatatttaactcagatggtgacatgtggctgttccagcgtaaaaccgcagcactagagttcaccactc |
41066009 |
T |
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| Q |
330 |
gtaccctacgacaagccatggctcgatgggttagccgagccataaagtatagattctgtcca |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066008 |
gtaccctacgacaagccatggctcgatgggttagccgagccataaagtatagattctgtcca |
41065947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 372
Target Start/End: Original strand, 11314518 - 11314693
Alignment:
| Q |
197 |
cggttcgacaattacccaaaaggtccaacatggcagtcagtgtttcatgacttactcggagaaggtatatttaactcagatggtgacatgtggctgttcc |
296 |
Q |
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| T |
11314518 |
cggttcgacaattacccgaaagggccgacgtggcaagcggtgtttcatgatttgttgggtgatgggatctttaactctgatggtaacacgtgggtgttcc |
11314617 |
T |
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| Q |
297 |
agcgtaaaaccgccgcactagagttcaccactcgtaccctacgacaagccatggctcgatgggttagccgagccat |
372 |
Q |
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| T |
11314618 |
agcgcaagacagccgcgctggaattcaccacgcgtactttgcgccaagccatggctagatgggttagccgagccat |
11314693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 25243263 - 25243363
Alignment:
| Q |
275 |
gatggtgacatgtggctgttccagcgtaaaaccgccgcactagagttcaccactcgtaccctacgacaagccatggctcgatgggttagccgagccataa |
374 |
Q |
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|||||||||| ||||||| | || ||||||||||| ||||| || ||||| ||||| ||||| || |||||||||||||| ||||| | |||| |||||| |
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| T |
25243263 |
gatggtgacacgtggctggttcaacgtaaaaccgctgcactcgaattcacaactcgaacccttcgtcaagccatggctcgttgggtgaaccgaaccataa |
25243362 |
T |
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| Q |
375 |
a |
375 |
Q |
| |
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| |
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|
| T |
25243363 |
a |
25243363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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