View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_35 (Length: 401)
Name: NF1250_low_35
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 47 - 361
Target Start/End: Original strand, 30275541 - 30275853
Alignment:
| Q |
47 |
tgcaactcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaa |
146 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275541 |
tgcaacgcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaa |
30275640 |
T |
|
| Q |
147 |
ttatagtatcacattagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagta |
246 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275641 |
ttatagtatcacaatagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagta |
30275740 |
T |
|
| Q |
247 |
atgtttaataatgtatggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaa |
346 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275741 |
atgtttaataatgtatggtaat--tgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaa |
30275838 |
T |
|
| Q |
347 |
gacccagctccgcca |
361 |
Q |
| |
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||||||||||||||| |
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| T |
30275839 |
gacccagctccgcca |
30275853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 47 - 361
Target Start/End: Original strand, 7778852 - 7779164
Alignment:
| Q |
47 |
tgcaactcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaa |
146 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |
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| T |
7778852 |
tgcaacgcaagagtataaggtcttaaaaataatttatgttagttacaatttacaatctgttgtgtttagttgttaagtagaaacaacgttcaacattaag |
7778951 |
T |
|
| Q |
147 |
ttatagtatcacattagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagta |
246 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7778952 |
ttatagtatcagattagagattagaccgacataaatgcggtgtatcaactgttaaatgcttctttgataaagctaaacagaaaatcaaaacacatcagta |
7779051 |
T |
|
| Q |
247 |
atgtttaataatgtatggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaa |
346 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7779052 |
atgtttaataatatatggtaat--tgaacacacctgtaatagtgtcagaacgttctggccactagaagttagcagacaataatcaggttgttcttttgaa |
7779149 |
T |
|
| Q |
347 |
gacccagctccgcca |
361 |
Q |
| |
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|| |||||||||||| |
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|
| T |
7779150 |
gatccagctccgcca |
7779164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 28843301 - 28843245
Alignment:
| Q |
186 |
gtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatc |
242 |
Q |
| |
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|||||||||||||||| | | ||||||||||| ||||||| || || |||||||||| |
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| T |
28843301 |
gtgtatcaactgttaagtacctcttttataaatctaaacataatattaaaacacatc |
28843245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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