View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_36 (Length: 398)
Name: NF1250_low_36
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 80 - 369
Target Start/End: Original strand, 40059602 - 40059891
Alignment:
| Q |
80 |
atgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatc |
179 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40059602 |
atgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatc |
40059701 |
T |
|
| Q |
180 |
ggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcatctaatcgagggctttaact |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40059702 |
ggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcatctaatcgagggctttaact |
40059801 |
T |
|
| Q |
280 |
tcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagaggtaaccat |
369 |
Q |
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| T |
40059802 |
tcttaacagtggtttccctctttggcttcacttcattccggggattaagttccgaactgataatgaaccatttaaggtagaggtaaccat |
40059891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 80 - 359
Target Start/End: Original strand, 40077684 - 40077961
Alignment:
| Q |
80 |
atgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatc |
179 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
40077684 |
atgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtaaaggcagtggctgaggcaggactatatgtgcatctccggatc |
40077783 |
T |
|
| Q |
180 |
ggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcat--ctaatcgagggctttaa |
277 |
Q |
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| T |
40077784 |
ggtccatatgtgtgtgctgaatggaactacgggtaaagtttggtcc----tttctgtgtattatttttctgtggtgttcatgtctaattgagggctttaa |
40077879 |
T |
|
| Q |
278 |
cttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag |
359 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
40077880 |
cttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggtag |
40077961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 80 - 358
Target Start/End: Original strand, 40085489 - 40085765
Alignment:
| Q |
80 |
atgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatc |
179 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||||||||| || |
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| T |
40085489 |
atgaaatggatttttgcagtatgattttgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggatt |
40085588 |
T |
|
| Q |
180 |
ggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttca--tctaatcgagggctttaa |
277 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||| ||||||||| |||||| ||||||||||| |
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| T |
40085589 |
ggtccatatgtttgttctgaatggaactatgggtaaagt----ttggtaatttatgtgtattatatttcgagggtgttcatgtctaattgagggctttaa |
40085684 |
T |
|
| Q |
278 |
cttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggta |
358 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
40085685 |
cttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggta |
40085765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 260 - 367
Target Start/End: Complemental strand, 35052758 - 35052652
Alignment:
| Q |
260 |
tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag |
359 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||| ||| || |||||||||||||||||| |
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| T |
35052758 |
tctaattgagggctttaacttcttaacagtggttaacctctttggattcacttcattccagggattaggttccaaacagacaatgaaccatttaaggta- |
35052660 |
T |
|
| Q |
360 |
aggtaacc |
367 |
Q |
| |
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|||||||| |
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| T |
35052659 |
aggtaacc |
35052652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 241 - 358
Target Start/End: Complemental strand, 12735579 - 12735460
Alignment:
| Q |
241 |
tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg |
338 |
Q |
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|||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| || | |
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| T |
12735579 |
tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag |
12735480 |
T |
|
| Q |
339 |
ataatgaaccatttaaggta |
358 |
Q |
| |
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| |||||||||||||||||| |
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| T |
12735479 |
acaatgaaccatttaaggta |
12735460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 241 - 358
Target Start/End: Complemental strand, 12798406 - 12798287
Alignment:
| Q |
241 |
tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg |
338 |
Q |
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|||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| || | |
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| T |
12798406 |
tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag |
12798307 |
T |
|
| Q |
339 |
ataatgaaccatttaaggta |
358 |
Q |
| |
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| |||||||||||||||||| |
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| T |
12798306 |
acaatgaaccatttaaggta |
12798287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 367
Target Start/End: Original strand, 53322735 - 53322862
Alignment:
| Q |
241 |
tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg |
338 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||||||| | ||||| |||||||| ||||||||||||| ||||||||||||| || | |
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| T |
53322735 |
tatttttctggggtcttcatttctaattgagggctttaacttcttaagattggttaacctctttgtattcacttcattccagggattaagttccaaatcg |
53322834 |
T |
|
| Q |
339 |
ataatgaaccatttaaggtagaggtaacc |
367 |
Q |
| |
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| |||||||||||||||||| |||||||| |
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| T |
53322835 |
acaatgaaccatttaaggta-aggtaacc |
53322862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 22015910 - 22015825
Alignment:
| Q |
131 |
atttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaa |
216 |
Q |
| |
|
||||||||||||||| || | || || |||||||||||||||| |||||||||||||| |||||||||||||| || ||||||| |
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| T |
22015910 |
atttgtgaaggcagtagcagcagcaggtttatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaaa |
22015825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 22015744 - 22015667
Alignment:
| Q |
284 |
aacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagag |
361 |
Q |
| |
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|||||||||||||| |||||| | || || ||| | || ||||||||||||||| ||||||||||||| |||| |||| |
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| T |
22015744 |
aacagtggtttccccctttggttgcattttattgctggaattaagttccgaactaataatgaaccattcaaggcagag |
22015667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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