View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_37 (Length: 395)
Name: NF1250_low_37
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 39586999 - 39587382
Alignment:
| Q |
1 |
cttggggttagaagggaccttagaaaacaaggttgtgttgttgggatcaaagacttgttattgctcgatcgggctatctcggcacaggatacaagaaaca |
100 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
39586999 |
cttggggtcagaagggacctttgaaaacaaggttgtgttgttgggatcaaagacttgttattgctcgatcgggctatctcggcccatgatacaagaaaca |
39587098 |
T |
|
| Q |
101 |
tgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatttcatccaagttgcctgcacagttacaagatgatg |
200 |
Q |
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| T |
39587099 |
tgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatttcatccaagttgcctgcacagttacaagatgata |
39587198 |
T |
|
| Q |
201 |
ataattctttcactattctaataatcccttgagatcaaaatgtttttgtaaatatgaacaaatattaaaaactttcacctgaacagcaagtacaccatat |
300 |
Q |
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| T |
39587199 |
ataattctttcactattctaataatcccttgagatcaaaatgtttttgtaaatatgaacaaatattaaaaactttcacctgaacagcaagtacaccatat |
39587298 |
T |
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| Q |
301 |
ttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatcagcaacagct |
384 |
Q |
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| T |
39587299 |
ttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatcagcaacagct |
39587382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 39553891 - 39554081
Alignment:
| Q |
3 |
tggggttagaagggaccttagaaaacaaggttgtgttgttgggatcaaagacttgttattgctcgatcgggctatctcggcacaggatacaagaaacatg |
102 |
Q |
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| T |
39553891 |
tggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatcaaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatg |
39553990 |
T |
|
| Q |
103 |
tttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatttcatccaagttgcctgcacagttacaa |
193 |
Q |
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|||||||||||||| || ||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| ||| |||| |
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| T |
39553991 |
tttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttcatccaagttgcctgcatagtaacaa |
39554081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 39543893 - 39544062
Alignment:
| Q |
24 |
aaaacaaggttgtgttgttgggatcaaagacttgttattgctcgatcgggctatctcggcacaggatacaagaaacatgtttgcagaataggcgtcggct |
123 |
Q |
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| T |
39543893 |
aaaacaaggttgcattgttgggatcaaagacttgttattgttgggtcgagctatctcggcccatgatacaaggaacatgtttgcagaatatgcgtccgct |
39543992 |
T |
|
| Q |
124 |
attcgatggtcaaaattgcacgccactactaacccaccacatttcatccaagttgcctgcacagttacaa |
193 |
Q |
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|| |||||||||||| |||| ||||||||||| ||||||||||||||||| |||| ||||| ||| |||| |
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| T |
39543993 |
atacgatggtcaaaagtgcaagccactactaatccaccacatttcatccatgttgtctgcatagtaacaa |
39544062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 273 - 384
Target Start/End: Original strand, 39544840 - 39544951
Alignment:
| Q |
273 |
tttcacctgaacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaaca |
372 |
Q |
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|||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||| ||||||||| |
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| T |
39544840 |
tttcacctgagcagcaagcacaccatgtttcttctttggaacaagcttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaaca |
39544939 |
T |
|
| Q |
373 |
tcagcaacagct |
384 |
Q |
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||||||| |||| |
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| T |
39544940 |
tcagcaaaagct |
39544951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 39554158 - 39554265
Alignment:
| Q |
277 |
acctgaacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatcag |
376 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||| ||||| |||||||||| ||||||||| ||||||||||||| |
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| T |
39554158 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
39554257 |
T |
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| Q |
377 |
caacagct |
384 |
Q |
| |
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||| |||| |
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| T |
39554258 |
caaaagct |
39554265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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