View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_38 (Length: 389)
Name: NF1250_low_38
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 39586830 - 39586548
Alignment:
| Q |
11 |
cacagataatagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaat |
110 |
Q |
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| T |
39586830 |
cacaaataatagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcttgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaat |
39586731 |
T |
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| Q |
111 |
gttgttgcaaaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgc |
210 |
Q |
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| T |
39586730 |
gttgttgcaaaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgc |
39586631 |
T |
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| Q |
211 |
tttcaactccctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagttt |
293 |
Q |
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| T |
39586630 |
tttcaactccctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagttt |
39586548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 33 - 294
Target Start/End: Complemental strand, 39553701 - 39553440
Alignment:
| Q |
33 |
aagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattg |
132 |
Q |
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| T |
39553701 |
aagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttg |
39553602 |
T |
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| Q |
133 |
tggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtag |
232 |
Q |
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| T |
39553601 |
tggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtag |
39553502 |
T |
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| Q |
233 |
attaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttt |
294 |
Q |
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| T |
39553501 |
attagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttt |
39553440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 36 - 294
Target Start/End: Complemental strand, 39543679 - 39543421
Alignment:
| Q |
36 |
cgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattgtgg |
135 |
Q |
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| T |
39543679 |
cgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttgtgg |
39543580 |
T |
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| Q |
136 |
ttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtagatt |
235 |
Q |
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| T |
39543579 |
ttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtagatt |
39543480 |
T |
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| Q |
236 |
aatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttt |
294 |
Q |
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| T |
39543479 |
agcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttt |
39543421 |
T |
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