View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_39 (Length: 388)
Name: NF1250_low_39
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_39 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 30 - 388
Target Start/End: Complemental strand, 2510473 - 2510118
Alignment:
| Q |
30 |
atgccaaacctcgcactactatccttcctgctgagacctttgaacatctttcgagttttacagagttcatgttttccgctttaaccactgccttataatt |
129 |
Q |
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| T |
2510473 |
atgccaaacctcgcactactatccttcctgctgagacctttgaacatctttcgagttttacagagttcatgttttccgctttaaccactgccttagaatt |
2510374 |
T |
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| Q |
130 |
tatgttaacctgatgatgattatgtttttcaggaagtttagagttcccttcagaatcagcttgaacaatgttatcaaactttctcttgaacaatgtctgc |
229 |
Q |
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||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2510373 |
tatgttaacctgatgat---tatgttttttaggaagtttagcgttcccttcagaatcagcttgaacaatgttatcaaactttctcttgaacaatgtctgc |
2510277 |
T |
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| Q |
230 |
aacttctttcaaagaagaaagctcttttagacactcatcccaactgaaactcgttaagtttaagctaatccactaaaatcttcactctcctcttaaatca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2510276 |
aacttctttcaaagaagaaagctcttttagacactcatcccaactgaaactcgttaagtttaagctaatccactaaaatcttcactctcctcttaaatca |
2510177 |
T |
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| Q |
330 |
tatttgctctttattttcttcacttgttcttcaattttccttctaacttccattttctc |
388 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
2510176 |
tatttgctctctcttttcttcacttgttcttcaattttccttcgaccttccattttctc |
2510118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 30 - 217
Target Start/End: Complemental strand, 2512213 - 2512020
Alignment:
| Q |
30 |
atgccaaacctcgcactactatccttcctgctgagacctttgaacatctttcgagttttacagagttcatgttttccgctttaaccactgccttataatt |
129 |
Q |
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| T |
2512213 |
atgccaaacctcgcactactatccttcctgatgagacctttgaattacttttgagttttacagtgttcatgttttccactttaaccactgccttagaatt |
2512114 |
T |
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| Q |
130 |
tatgttaacctgatga------tgattatgtttttcaggaagtttagagttcccttcagaatcagcttgaacaatgttatcaaactttctcttg |
217 |
Q |
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| T |
2512113 |
tatgttaacctgatgatgatgatgattatgtttttcaggaagtttagggttccctgcagaatcagcttgaacaatgttatcaaactttctcttg |
2512020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 2496032 - 2495857
Alignment:
| Q |
42 |
gcactactatccttcctgctgagacctttgaacatctttcgagttttacagagttcatgttttccgctttaaccactgccttataatttatgttaacctg |
141 |
Q |
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|||||| | |||| |||| ||||||| | |||| |||||||||||||||| ||| |||||||| |||||||||||| ||||| |||||||||||||| | |
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| T |
2496032 |
gcactaatttcctgcctgatgagaccatggaactactttcgagttttacagtgttgatgttttctgctttaaccactaccttagaatttatgttaaccag |
2495933 |
T |
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| Q |
142 |
atgatgattatgtttttcaggaagtttagagttcccttcagaatcagcttgaacaatgttatcaaactttctcttg |
217 |
Q |
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| T |
2495932 |
aagatgattatatttttcaggaaggctagtgttcccttcagaatcagcttgaacaatgttatcaaactttctcttg |
2495857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 2511994 - 2511948
Alignment:
| Q |
223 |
tgtctgcaacttctttcaaagaagaaagctcttttagacactcatcc |
269 |
Q |
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| T |
2511994 |
tgtctgcaacttctttcaaagaagaaagctcctttagacactcatcc |
2511948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 2495825 - 2495785
Alignment:
| Q |
229 |
caacttctttcaaagaagaaagctcttttagacactcatcc |
269 |
Q |
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| T |
2495825 |
caacttctttcaaagaagaaagctccttcagacactcatcc |
2495785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 4258346 - 4258303
Alignment:
| Q |
226 |
ctgcaacttctttcaaagaagaaagctcttttagacactcatcc |
269 |
Q |
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| T |
4258346 |
ctgcaacttctttcaaagaagcgagctcctttagacactcatcc |
4258303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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