View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_40 (Length: 374)
Name: NF1250_low_40
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 55383684 - 55384024
Alignment:
| Q |
9 |
caacaaaatcacaaacacttgcgcaaatataaataaatttccattattcctcata--ctaacactaacacattccttctgcacagaagagaaatggaaat |
106 |
Q |
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| T |
55383684 |
caacaaaatcacaaacacttgcgcaaatataaataaatttccattattcctcatatactaacactaacacattccttctgcacagaagagaaatggaaat |
55383783 |
T |
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| Q |
107 |
atctcttcctttgattcttcttgccactgtggttattatggctatgccactttcatttggtgtaaaaggaaaccaactttcttacaactactacaagaat |
206 |
Q |
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| T |
55383784 |
atctcttcctttgattcttctttccactgtggttattatggctatgccactttcatttggtgtaaaaggaaaccaactttcttacaactactacaagaat |
55383883 |
T |
|
| Q |
207 |
tcttgtccaaacttggaaagtttggtcgagagagaattgatgagcgtattcatgacagatattcgtgcaccatcagcatttctaaggctcatgtttcatg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55383884 |
tcttgtccaaacttggaaagtttggtcgagagagaattgatgagcgtattcatgacagatattcgtgcaccatcagcatttctaaggctcatgtttcatg |
55383983 |
T |
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| Q |
307 |
attgccaagttcaggtaattcctagataggtgttttttatg |
347 |
Q |
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| T |
55383984 |
attgccaagttcaggtaattcctagataggtgttttttatg |
55384024 |
T |
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