View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_41 (Length: 373)
Name: NF1250_low_41
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_41 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0086 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 44314246 - 44313874
Alignment:
| Q |
1 |
tctgcactgaggtgcatagtgacctatcttaccacatacataacagtgtcctccatttccatttttgaaagtgggattagtaacacgaggaacataatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
44314246 |
tctgcactgaggtgcatagtgacctatcttaccacatacataacaatgtcctccatttccatttgtgaaagtgggattagtaacacgaggaacatgatta |
44314147 |
T |
|
| Q |
101 |
tttttattgtgaccagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctgg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314146 |
tttttatagtgaccagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctgg |
44314047 |
T |
|
| Q |
201 |
ccttggtagccctgctctcctttcggttggtatcctctatgatgatgtgtgtaataagatctgccaacggcaactgcttctgcttgtgcttcagctggtt |
300 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314046 |
ccttggcagccctgctctcctttcggttggtattctctatgatgatgtgtgtaataagatctgccaacggcaactgcttctgcttgtgcttcagctggtt |
44313947 |
T |
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| Q |
301 |
cttgtaatcgttccatgattcaggcaatttttcaatgagaattccagcaatgaactcgtctgggagaggaata |
373 |
Q |
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| T |
44313946 |
cttgtaatcgttccatgattcagacaatttttcaatgagaattccagcaatgaactcgtctgggagaggaata |
44313874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 34098646 - 34099018
Alignment:
| Q |
1 |
tctgcactgaggtgcatagtgacctatcttaccacatacataacagtgtcctccatttccatttttgaaagtgggattagtaacacgaggaacataatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
34098646 |
tctgcactgaggtgcatagtgacctatcttaccacatacataacaatgtcctccatttccatttgtgaaagtgggattagtaacacgaggaacatgatta |
34098745 |
T |
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| Q |
101 |
tttttattgtgaccagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctgg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098746 |
tttttatagtgaccagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctgg |
34098845 |
T |
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| Q |
201 |
ccttggtagccctgctctcctttcggttggtatcctctatgatgatgtgtgtaataagatctgccaacggcaactgcttctgcttgtgcttcagctggtt |
300 |
Q |
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| T |
34098846 |
ccttggcagccctgctctcctttcggttggtattctctatgatgatgtgtgtaataagatctgccaacggcaactgcttctgcttgtgcttcagctggtt |
34098945 |
T |
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| Q |
301 |
cttgtaatcgttccatgattcaggcaatttttcaatgagaattccagcaatgaactcgtctgggagaggaata |
373 |
Q |
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| T |
34098946 |
cttgtaatcgttccatgattcagacaatttttcaatgagaattccagcaatgaactcgtctgggagaggaata |
34099018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40326 - 40565
Alignment:
| Q |
1 |
tctgcactgaggtgcatagtgacctatcttaccacatacataacagtgtcctccatttccatttttgaaagtgggattagtaacacgaggaacataatta |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
40326 |
tctgcactgaggtgcatagtgacctttcttaccacatacataacagtgtcctccatttccattttcgaaagagggattagtaacacgaggaacatgatta |
40425 |
T |
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| Q |
101 |
tttttattgtgaccagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctgg |
200 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40426 |
tttttattgtgaccaggtttatgattaggtttgttatcatacctctttttctaattagtgttgttttggatcagatttgcttgggaagctaaagccctgg |
40525 |
T |
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| Q |
201 |
ccttggtagccctgctctcctttcggttggtatcctctat |
240 |
Q |
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| |||| |||||||||||||||| |||||||||||||||| |
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| T |
40526 |
ctttggcagccctgctctcctttaggttggtatcctctat |
40565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 367
Target Start/End: Original strand, 40568 - 40654
Alignment:
| Q |
281 |
tgcttgtgcttcagctggttcttgtaatcgttccatgattcaggcaatttttcaatgagaattccagcaatgaactcgtctgggaga |
367 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
40568 |
tgcttgtgcttcaactggttcttgtaatcgttccatgattccgacaatttttcaatgagaattccatcaatgaaatcgtctgggaga |
40654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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