View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_46 (Length: 360)

Name: NF1250_low_46
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_46
NF1250_low_46
[»] chr4 (1 HSPs)
chr4 (150-207)||(50419784-50419841)
[»] chr2 (4 HSPs)
chr2 (150-207)||(13046123-13046180)
chr2 (157-190)||(8979797-8979830)
chr2 (157-190)||(8997075-8997108)
chr2 (157-190)||(9013198-9013231)
[»] chr1 (1 HSPs)
chr1 (1-60)||(38468132-38468191)


Alignment Details
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 50419841 - 50419784
Alignment:
Q  150 gggtagattattcttgcagaagcaaaccagccacagtgaaggtgaatattatatggag 207  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50419841 gggttgattattcttgcagaagcaaaccagccacagtgaaggtgaatattatatggag 50419784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 13046123 - 13046180
Alignment:
Q  150 gggtagattattcttgcagaagcaaaccagccacagtgaaggtgaatattatatggag 207  Q
    |||| |||||||||||||||||||||||| ||||||||||| || |||| ||| ||||    
T  13046123 gggttgattattcttgcagaagcaaaccaaccacagtgaagatggatatcataaggag 13046180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 8979830 - 8979797
Alignment:
Q  157 ttattcttgcagaagcaaaccagccacagtgaag 190  Q
    |||||||||||||||||||||| |||||||||||    
T  8979830 ttattcttgcagaagcaaaccaaccacagtgaag 8979797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 8997108 - 8997075
Alignment:
Q  157 ttattcttgcagaagcaaaccagccacagtgaag 190  Q
    |||||||||||||||||||||| |||||||||||    
T  8997108 ttattcttgcagaagcaaaccaaccacagtgaag 8997075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 9013231 - 9013198
Alignment:
Q  157 ttattcttgcagaagcaaaccagccacagtgaag 190  Q
    |||||||||||||||||||||| |||||||||||    
T  9013231 ttattcttgcagaagcaaaccaaccacagtgaag 9013198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38468132 - 38468191
Alignment:
Q  1 agacccagaaaagtgtgtgagacaaatattagagcatagaagcaaagttgtggaagtact 60  Q
    ||||||| |||||||||||| |||||| ||||| |||| || |||||||||| |||||||    
T  38468132 agacccataaaagtgtgtgatacaaatcttagatcatataatcaaagttgtgtaagtact 38468191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University