View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_48 (Length: 353)
Name: NF1250_low_48
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 18562575 - 18562260
Alignment:
| Q |
9 |
atcatagggtatacgcttgaggttttggtttgttcgtttgtgttcaagtattgttctttggatttgtttggttcagttagtgacagttagtgaactatgg |
108 |
Q |
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| T |
18562575 |
atcagagggtatacgtttgaggttttggtttgttcgtttgtgttcaagtattgttctttggatttgtttggttcagttagtgacagttagtgaactatgg |
18562476 |
T |
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| Q |
109 |
cattcacatttcatttctgggattactactggtatatataacattgctcaaaatcaacttcctaaccaaaatgatgataataatggcgttgtcgataaat |
208 |
Q |
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| T |
18562475 |
cattcacatttcatttctgggattactactggtatatataacattgctcaaattcaacttcctaaccaaaatgatgctaataatggcgttgtcgataaat |
18562376 |
T |
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| Q |
209 |
ccccgcctccgattacttttcttcctccaagttagtttcttgactctaattctagtcctttttgtatcagatatgnnnnnnngtttgttttaatttgatg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
18562375 |
ccccgcctccgattacttttcttcctccaagttagtttcttgactctaattctagtcctttttgtatcagatatgtttttttgtttgttttaatctgatg |
18562276 |
T |
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| Q |
309 |
ctttaatgtaaccttt |
324 |
Q |
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|||||||| ||||||| |
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| T |
18562275 |
ctttaatgcaaccttt |
18562260 |
T |
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