View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_49 (Length: 353)
Name: NF1250_low_49
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 189 - 345
Target Start/End: Original strand, 35263541 - 35263697
Alignment:
| Q |
189 |
tatatatataaggtcgataaattaacaatgcaggacgttaactaaaaattggaggctgttacaaagtacaacttaagtatttcaagctgaaactaaatga |
288 |
Q |
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| T |
35263541 |
tatatatataaggtcgataaattaacaatgcaggacgttaactaaaaattggaggctgttacaaagcacaacttaagtatttcaagctgaaactaaatga |
35263640 |
T |
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| Q |
289 |
cagacttctcagtgaataagttatatatgcatttttaggaaatccaacattcatctc |
345 |
Q |
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| T |
35263641 |
cagacttctcagtgaataagttatatatgccgttttaggaaatccaacattcatctc |
35263697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 204 - 344
Target Start/End: Original strand, 35270972 - 35271113
Alignment:
| Q |
204 |
gataaattaacaatgcagga-cgttaactaaaaattggaggctgttacaaagtacaacttaagtatttcaagctgaaactaaatgacagacttctcagtg |
302 |
Q |
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| T |
35270972 |
gataaattaacagtgcaggatcgttaactaaaaattggagatcgttaccaagcataactcaagtatttcaaactgaaactaaatgacagacttctcagtg |
35271071 |
T |
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| Q |
303 |
aataagttatatatgcatttttaggaaatccaacattcatct |
344 |
Q |
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| T |
35271072 |
aataagttatatatgccgtttcaggaaatccaacattcatct |
35271113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 332
Target Start/End: Original strand, 35252616 - 35252748
Alignment:
| Q |
204 |
gataaattaacaatgcagga-cgttaactaaaaattggaggctgtt-acaaagtacaacttaagtatttcaagctgaaactaa--atgacagacttctca |
299 |
Q |
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| T |
35252616 |
gataaattaacagtacaggttcgttaactaaaaattggaggctgttaacaaagaataactgaagtatttcaagtcgaaactgattatgacagacatctca |
35252715 |
T |
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| Q |
300 |
gtgaataagttatatatgcatttttaggaaatc |
332 |
Q |
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| | |||||||||||||| || ||||||||| |
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| T |
35252716 |
attagtaagttatatatgctattataggaaatc |
35252748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 36392256 - 36392349
Alignment:
| Q |
98 |
cacaattgaagagagagaaaagggtttctaatgtccaattaaaaaggtgttacatgttaatgcacacctgcataaaaatggatgggtgtgttata |
192 |
Q |
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| T |
36392256 |
cacaattaaagagagagataagagtttttaa-gtgtaattgaaaaggtgtttcatgttaaaacacaccttcacaaaagtgtatgggtgtgttata |
36392349 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 22801444 - 22801608
Alignment:
| Q |
29 |
aagaaatgagagcaagagagagaaattgaggtttgggtatgaaaattacttta-gaggcattcaatagatcacaattgaagagagagaaaagggtttcta |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
22801444 |
aagaaatgagagcaagagagagaaattgaggtttgggtatgaaaattactttaagaggcattcaataggtcacaattgaagagagagaaaagggttttta |
22801543 |
T |
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| Q |
128 |
atgtccaattaaaaaggtgttacatgttaatgcacacctgcataaaaatggatgggtgtgttata |
192 |
Q |
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| T |
22801544 |
atgtccaattaaaaaggtgttacatgctactgcacaccttcctaaaaatggatgggtgtgttata |
22801608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 22801047 - 22800897
Alignment:
| Q |
44 |
gagagagaaattgaggtttgggtatgaaaattactttagaggcattcaatagatcacaattgaagagagagaaaaggg--tttctaatgtccaattaaaa |
141 |
Q |
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|||||||||| || || |||||||||||||||||||||||| |||| ||||||| |||||| |||||||||||||| | ||| || ||||||| ||| | |
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| T |
22801047 |
gagagagaaaatggggattgggtatgaaaattactttagagacatttaatagataacaattaaagagagagaaaagagtttttttagtgtccaaataata |
22800948 |
T |
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| Q |
142 |
aggtgttacatgttaatgcacacctgcataaaaatggatgggtgtgttata |
192 |
Q |
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| T |
22800947 |
aggtattgtatgctgatgtacaccttcataaaaataaatgggtgtgttata |
22800897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 86 - 191
Target Start/End: Original strand, 4355774 - 4355879
Alignment:
| Q |
86 |
cattcaatagatcacaattgaagagagagaaaagggtttctaatgtccaattaaaaaggtgttacatgttaatgcacacctgcataaaaatggatgggtg |
185 |
Q |
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|||| |||||||||||||||||||||||||||||||||| || ||||||| ||| |||||||| |||| |||| |||||| ||||||||| ||| |||| |
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| T |
4355774 |
catttaatagatcacaattgaagagagagaaaagggtttttagtgtccaaataataaggtgttgcatgctaatatacaccttcataaaaatagataggtg |
4355873 |
T |
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| Q |
186 |
tgttat |
191 |
Q |
| |
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| |||| |
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| T |
4355874 |
tattat |
4355879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 50953781 - 50953733
Alignment:
| Q |
129 |
tgtccaattaaaaaggtgttacatgttaatgcacacctgcataaaaatg |
177 |
Q |
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|||||||||||||||||||| |||| |||||||||||| |||||||||| |
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| T |
50953781 |
tgtccaattaaaaaggtgtttcatgctaatgcacaccttcataaaaatg |
50953733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 19429135 - 19429190
Alignment:
| Q |
98 |
cacaattgaagagagagaaaagggtttctaatgtccaattaaaaaggtgttacatg |
153 |
Q |
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||||||||||||||||| |||||| || || |||||||||| ||||||||| |||| |
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| T |
19429135 |
cacaattgaagagagaggaaagggcttttagtgtccaattataaaggtgtttcatg |
19429190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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