View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_50 (Length: 349)

Name: NF1250_low_50
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_50
NF1250_low_50
[»] chr7 (38 HSPs)
chr7 (30-349)||(25956330-25956651)
chr7 (118-216)||(5937361-5937460)
chr7 (156-216)||(21880172-21880232)
chr7 (177-216)||(1885593-1885632)
chr7 (305-349)||(30442482-30442526)
chr7 (156-207)||(7197276-7197327)
chr7 (310-349)||(25021373-25021412)
chr7 (310-349)||(26459448-26459487)
chr7 (310-349)||(39631843-39631882)
chr7 (310-349)||(42836039-42836078)
chr7 (178-216)||(36013799-36013837)
chr7 (311-349)||(39499757-39499795)
chr7 (172-216)||(2144533-2144578)
chr7 (144-216)||(39138464-39138537)
chr7 (123-216)||(44317232-44317325)
chr7 (123-216)||(48963997-48964101)
chr7 (156-216)||(8234166-8234226)
chr7 (168-216)||(25481922-25481970)
chr7 (311-347)||(35119383-35119419)
chr7 (312-348)||(35513467-35513503)
chr7 (309-345)||(45559198-45559234)
chr7 (311-347)||(45709748-45709784)
chr7 (179-214)||(22801743-22801778)
chr7 (309-348)||(43590905-43590944)
chr7 (178-216)||(7438726-7438764)
chr7 (178-216)||(17257990-17258028)
chr7 (310-344)||(24513796-24513830)
chr7 (311-349)||(26199509-26199547)
chr7 (311-349)||(43215184-43215222)
chr7 (118-163)||(10893304-10893349)
chr7 (311-348)||(33181249-33181286)
chr7 (311-348)||(41487362-41487399)
chr7 (311-347)||(4161288-4161324)
chr7 (172-216)||(10893864-10893908)
chr7 (156-216)||(15680829-15680889)
chr7 (132-187)||(22801684-22801740)
chr7 (172-216)||(28155590-28155634)
chr7 (162-210)||(33994238-33994286)
[»] chr2 (36 HSPs)
chr2 (118-216)||(43585945-43586044)
chr2 (145-216)||(2438686-2438758)
chr2 (145-209)||(12224250-12224315)
chr2 (170-216)||(5040754-5040800)
chr2 (156-216)||(18570992-18571052)
chr2 (156-216)||(30404829-30404889)
chr2 (174-221)||(37558992-37559039)
chr2 (311-349)||(42327433-42327471)
chr2 (311-349)||(42602554-42602592)
chr2 (183-216)||(13501084-13501117)
chr2 (171-216)||(19536391-19536436)
chr2 (301-348)||(1729805-1729853)
chr2 (156-216)||(18840992-18841052)
chr2 (185-221)||(24067268-24067304)
chr2 (179-214)||(14373429-14373464)
chr2 (157-216)||(24067770-24067829)
chr2 (122-156)||(8300179-8300213)
chr2 (118-156)||(14450707-14450745)
chr2 (170-216)||(15972893-15972939)
chr2 (171-209)||(21624294-21624332)
chr2 (311-349)||(25931006-25931044)
chr2 (311-349)||(29503271-29503309)
chr2 (174-216)||(31026715-31026757)
chr2 (311-349)||(37480075-37480113)
chr2 (311-345)||(42922414-42922448)
chr2 (179-216)||(14450797-14450834)
chr2 (310-347)||(16381694-16381731)
chr2 (116-188)||(17895821-17895894)
chr2 (171-216)||(18255974-18256019)
chr2 (144-216)||(20242693-20242766)
chr2 (41-90)||(37253266-37253315)
chr2 (311-344)||(39764958-39764991)
chr2 (172-216)||(8300214-8300258)
chr2 (172-216)||(33884071-33884115)
chr2 (172-216)||(37211880-37211924)
chr2 (168-216)||(45000837-45000885)
[»] chr6 (31 HSPs)
chr6 (123-216)||(26402625-26402719)
chr6 (124-216)||(1334681-1334774)
chr6 (177-252)||(19369797-19369876)
chr6 (156-216)||(6751862-6751921)
chr6 (124-192)||(26178527-26178596)
chr6 (145-216)||(28715315-28715387)
chr6 (177-214)||(785455-785492)
chr6 (145-210)||(4877969-4878034)
chr6 (131-203)||(32225343-32225416)
chr6 (156-216)||(28152118-28152178)
chr6 (156-216)||(34595154-34595214)
chr6 (148-210)||(32978869-32978932)
chr6 (311-349)||(12188341-12188379)
chr6 (171-216)||(426508-426553)
chr6 (156-216)||(7265572-7265632)
chr6 (172-216)||(7977825-7977869)
chr6 (156-208)||(13364684-13364736)
chr6 (118-188)||(785384-785455)
chr6 (185-216)||(10031590-10031621)
chr6 (181-216)||(10158004-10158039)
chr6 (118-153)||(19369889-19369924)
chr6 (170-216)||(7377999-7378045)
chr6 (315-349)||(24507574-24507608)
chr6 (311-344)||(2616476-2616509)
chr6 (170-215)||(6898274-6898319)
chr6 (171-208)||(16388211-16388248)
chr6 (132-212)||(20663508-20663589)
chr6 (311-348)||(21418470-21418507)
chr6 (145-188)||(10339081-10339125)
chr6 (156-216)||(33001268-33001328)
chr6 (172-216)||(34057974-34058018)
[»] chr3 (36 HSPs)
chr3 (123-215)||(34834873-34834965)
chr3 (145-216)||(10954972-10955044)
chr3 (145-216)||(20503485-20503557)
chr3 (156-216)||(14338462-14338522)
chr3 (145-216)||(40993302-40993374)
chr3 (310-344)||(8170671-8170705)
chr3 (309-347)||(16991540-16991578)
chr3 (156-216)||(55401095-55401155)
chr3 (310-349)||(14186647-14186686)
chr3 (171-210)||(25775535-25775574)
chr3 (145-216)||(28918021-28918095)
chr3 (153-216)||(35222958-35223021)
chr3 (177-216)||(44427861-44427900)
chr3 (177-212)||(49179715-49179750)
chr3 (311-349)||(8051214-8051252)
chr3 (311-349)||(11092207-11092245)
chr3 (311-345)||(16354934-16354968)
chr3 (156-206)||(26492184-26492234)
chr3 (311-345)||(26988996-26989030)
chr3 (311-345)||(27093403-27093437)
chr3 (310-347)||(2667861-2667898)
chr3 (171-216)||(16000010-16000055)
chr3 (311-344)||(19154631-19154664)
chr3 (167-212)||(23271984-23272029)
chr3 (311-347)||(203090-203126)
chr3 (172-216)||(1502594-1502638)
chr3 (311-347)||(4222141-4222177)
chr3 (172-216)||(6984784-6984828)
chr3 (311-347)||(7975418-7975454)
chr3 (311-347)||(10499149-10499185)
chr3 (118-150)||(12987820-12987852)
chr3 (172-216)||(20691339-20691383)
chr3 (172-216)||(27858360-27858404)
chr3 (311-347)||(31789010-31789046)
chr3 (311-347)||(46518628-46518664)
chr3 (172-216)||(51206348-51206392)
[»] chr4 (45 HSPs)
chr4 (118-216)||(37496724-37496834)
chr4 (131-216)||(13307897-13307983)
chr4 (130-216)||(44362686-44362773)
chr4 (156-216)||(12797317-12797377)
chr4 (156-209)||(16073421-16073474)
chr4 (172-216)||(13117449-13117493)
chr4 (156-216)||(21945523-21945583)
chr4 (148-216)||(29205464-29205533)
chr4 (145-216)||(23292953-23293025)
chr4 (145-216)||(28964215-28964287)
chr4 (309-349)||(37109389-37109429)
chr4 (179-216)||(11797630-11797667)
chr4 (171-216)||(42640549-42640594)
chr4 (144-216)||(49431046-49431119)
chr4 (156-216)||(4157169-4157229)
chr4 (156-216)||(4157456-4157516)
chr4 (184-216)||(10164861-10164893)
chr4 (311-343)||(21434811-21434843)
chr4 (311-347)||(27965550-27965586)
chr4 (310-349)||(1730527-1730566)
chr4 (309-348)||(19229246-19229285)
chr4 (309-348)||(19238616-19238655)
chr4 (177-216)||(22799893-22799932)
chr4 (177-216)||(30298967-30299006)
chr4 (177-216)||(30327835-30327874)
chr4 (123-165)||(39619047-39619090)
chr4 (310-349)||(46545710-46545749)
chr4 (43-90)||(52043071-52043118)
chr4 (317-347)||(29312292-29312322)
chr4 (309-347)||(37443700-37443738)
chr4 (170-216)||(54580016-54580062)
chr4 (311-349)||(55427238-55427276)
chr4 (171-216)||(6879459-6879504)
chr4 (310-347)||(9241065-9241102)
chr4 (172-216)||(13484043-13484088)
chr4 (179-216)||(47492399-47492436)
chr4 (172-216)||(683072-683115)
chr4 (145-216)||(8423685-8423757)
chr4 (149-216)||(9298953-9299021)
chr4 (165-216)||(12310835-12310887)
chr4 (157-216)||(31901256-31901316)
chr4 (160-208)||(35062472-35062520)
chr4 (168-216)||(40224489-40224537)
chr4 (311-347)||(51250562-51250598)
chr4 (167-215)||(56049897-56049945)
[»] chr8 (38 HSPs)
chr8 (139-216)||(42874542-42874620)
chr8 (310-349)||(23874420-23874459)
chr8 (170-216)||(4948672-4948718)
chr8 (311-349)||(16852340-16852378)
chr8 (311-349)||(18540298-18540336)
chr8 (311-349)||(19703525-19703563)
chr8 (162-216)||(20873089-20873143)
chr8 (144-216)||(26915201-26915279)
chr8 (178-216)||(31548294-31548332)
chr8 (183-216)||(31119107-31119140)
chr8 (148-216)||(44462165-44462234)
chr8 (148-216)||(44469698-44469767)
chr8 (313-349)||(2203494-2203530)
chr8 (313-349)||(3624582-3624618)
chr8 (117-188)||(10497744-10497816)
chr8 (177-216)||(5307080-5307119)
chr8 (177-216)||(10002163-10002202)
chr8 (309-348)||(11819774-11819813)
chr8 (173-216)||(18170478-18170521)
chr8 (173-216)||(18634046-18634089)
chr8 (311-345)||(5264544-5264578)
chr8 (311-349)||(20994496-20994534)
chr8 (178-216)||(24295138-24295176)
chr8 (178-216)||(27733867-27733905)
chr8 (311-349)||(32157191-32157229)
chr8 (131-216)||(34073931-34074017)
chr8 (170-216)||(40332211-40332257)
chr8 (311-344)||(3826820-3826853)
chr8 (171-216)||(24613540-24613585)
chr8 (314-347)||(35690104-35690137)
chr8 (311-348)||(44780153-44780190)
chr8 (172-216)||(1433365-1433409)
chr8 (145-192)||(5813636-5813684)
chr8 (309-349)||(6530805-6530845)
chr8 (172-216)||(12985412-12985456)
chr8 (311-347)||(30483924-30483960)
chr8 (309-349)||(35826309-35826349)
chr8 (311-347)||(43292471-43292507)
[»] chr5 (42 HSPs)
chr5 (307-349)||(892512-892554)
chr5 (117-212)||(7621169-7621270)
chr5 (141-210)||(11084325-11084395)
chr5 (172-216)||(19167571-19167615)
chr5 (145-216)||(21576712-21576784)
chr5 (311-346)||(5390891-5390926)
chr5 (123-216)||(30080435-30080540)
chr5 (174-216)||(8420047-8420089)
chr5 (170-216)||(15884008-15884054)
chr5 (311-349)||(21549175-21549213)
chr5 (171-216)||(6247642-6247687)
chr5 (172-216)||(2548407-2548451)
chr5 (172-212)||(16207586-16207626)
chr5 (172-216)||(21191051-21191095)
chr5 (309-345)||(25627055-25627091)
chr5 (307-347)||(29075777-29075817)
chr5 (310-345)||(7918511-7918546)
chr5 (123-154)||(9031883-9031914)
chr5 (178-233)||(10009829-10009884)
chr5 (173-216)||(10010574-10010617)
chr5 (173-216)||(24906297-24906340)
chr5 (318-348)||(16436625-16436655)
chr5 (145-187)||(17123097-17123139)
chr5 (178-216)||(21319946-21319984)
chr5 (311-349)||(21589288-21589326)
chr5 (311-349)||(30883236-30883274)
chr5 (162-216)||(42029772-42029826)
chr5 (172-221)||(4445155-4445204)
chr5 (311-348)||(22737082-22737119)
chr5 (311-348)||(26078090-26078127)
chr5 (145-216)||(11596425-11596494)
chr5 (176-216)||(15294951-15294991)
chr5 (311-347)||(26598524-26598560)
chr5 (156-216)||(27932255-27932315)
chr5 (156-216)||(28588653-28588713)
chr5 (156-216)||(30502367-30502427)
chr5 (156-216)||(30542710-30542770)
chr5 (38-90)||(31973138-31973190)
chr5 (177-213)||(32444789-32444825)
chr5 (172-216)||(33178045-33178089)
chr5 (308-347)||(33709669-33709706)
chr5 (184-216)||(38784826-38784858)
[»] chr1 (47 HSPs)
chr1 (163-216)||(38078647-38078700)
chr1 (145-216)||(1815277-1815349)
chr1 (156-216)||(19637788-19637848)
chr1 (171-216)||(50195459-50195504)
chr1 (310-349)||(9165233-9165272)
chr1 (156-252)||(40258912-40259010)
chr1 (170-216)||(17007954-17008000)
chr1 (174-216)||(31667445-31667487)
chr1 (170-216)||(51410045-51410091)
chr1 (167-212)||(7988441-7988486)
chr1 (130-182)||(14613060-14613113)
chr1 (311-348)||(31794303-31794340)
chr1 (311-347)||(8177222-8177258)
chr1 (309-349)||(17745294-17745334)
chr1 (172-216)||(18337349-18337393)
chr1 (156-216)||(22515866-22515926)
chr1 (118-227)||(44126816-44126923)
chr1 (309-345)||(51703777-51703813)
chr1 (310-349)||(10526822-10526861)
chr1 (171-210)||(19058850-19058889)
chr1 (177-216)||(24462270-24462309)
chr1 (177-216)||(26390133-26390172)
chr1 (310-349)||(38978980-38979019)
chr1 (309-348)||(52116820-52116859)
chr1 (311-349)||(11063556-11063594)
chr1 (318-348)||(21547519-21547549)
chr1 (170-216)||(22881609-22881655)
chr1 (171-209)||(24334699-24334737)
chr1 (178-216)||(28170401-28170439)
chr1 (311-345)||(36371470-36371504)
chr1 (127-165)||(40686693-40686731)
chr1 (311-348)||(6122794-6122831)
chr1 (176-209)||(7888122-7888155)
chr1 (179-216)||(14332428-14332465)
chr1 (308-349)||(15581179-15581220)
chr1 (162-249)||(17893848-17893939)
chr1 (155-216)||(36878481-36878542)
chr1 (171-216)||(41877464-41877509)
chr1 (309-349)||(50901579-50901620)
chr1 (311-347)||(6650595-6650631)
chr1 (172-216)||(11412763-11412807)
chr1 (311-347)||(19528367-19528403)
chr1 (156-216)||(33202923-33202983)
chr1 (313-345)||(33700815-33700847)
chr1 (308-348)||(42787205-42787245)
chr1 (156-208)||(46348362-46348414)
chr1 (145-188)||(47989556-47989600)
[»] scaffold0314 (1 HSPs)
scaffold0314 (123-216)||(8968-9060)
[»] scaffold0083 (1 HSPs)
scaffold0083 (156-210)||(45509-45563)
[»] scaffold0122 (2 HSPs)
scaffold0122 (316-348)||(6958-6990)
scaffold0122 (118-183)||(10247-10313)
[»] scaffold0050 (1 HSPs)
scaffold0050 (156-216)||(70298-70358)
[»] scaffold0118 (1 HSPs)
scaffold0118 (309-344)||(41676-41711)
[»] scaffold0652 (1 HSPs)
scaffold0652 (170-216)||(455-501)
[»] scaffold0504 (1 HSPs)
scaffold0504 (118-156)||(8642-8680)
[»] scaffold0337 (1 HSPs)
scaffold0337 (315-349)||(1757-1791)
[»] scaffold0065 (1 HSPs)
scaffold0065 (315-349)||(12193-12227)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 30 - 349
Target Start/End: Complemental strand, 25956651 - 25956330
Alignment:
Q  30 ataccatctagagtttgggttgggcttaactgaacctcataaaaccggcttgtcaggtgagagatgcctcccatttgttaacaccgggctctattgcacg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25956651 ataccatctagagtttgggttgggcttaactgaacctcataaaaccggcttgtcaggtgagagatgcctcccatttgttaacaccgggctctattgcacg 25956552  T
Q  130 gacacttctgattgaaggcgtgtcccgtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattttgacaattttattc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  25956551 gacacttctgattgaaggcgtgtcccgtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattttcacaattttattt 25956452  T
Q  230 gtgtcagtgtccgtgcttcatagacac--agtcatatccaatgttagactcttgacgataggcattaacaaggtaaactttttaacccatttgggttggc 327  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25956451 gtgtcagtgtccgtgcttcataaacaccgagtcatatccaatgttagactcttgacaataggcattaacaaggtaaactttttaacccatttgggttggc 25956352  T
Q  328 ctagtggtattggcttgggacc 349  Q
    ||||||||||||||||||||||    
T  25956351 ctagtggtattggcttgggacc 25956330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 5937361 - 5937460
Alignment:
Q  118 ctctattgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||  ||||||||||| | | | |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  5937361 ctctattgcacggacacttcatattgaaggcgtattctggtgtccgacatgtatcgtgaccgacacagacacttgtgattacattgaattatgtcatttt 5937460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 21880232 - 21880172
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||| |||||||||| |||||    
T  21880232 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaatttt 21880172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 1885632 - 1885593
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1885632 cgacaccgacacttgtgattacattgaattatgtcatttt 1885593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 30442482 - 30442526
Alignment:
Q  305 ctttttaacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||    
T  30442482 ctttttaacccacttgggttggcccagtggtattggcttgggacc 30442526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 7197276 - 7197327
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaatta 207  Q
    ||||| ||||||| | ||||||||||||||||||||| ||||||||||||||    
T  7197276 gtgtcggacatgtgttgtgtccgacaccgacacttgtaattacattgaatta 7197327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 25021412 - 25021373
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  25021412 taacccacttgggttggcctagtggtattggcttgggacc 25021373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 26459487 - 26459448
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  26459487 taacccacttgggttggcctagtggtattggcttgggacc 26459448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 39631843 - 39631882
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  39631843 taacccacttgggttggcctagtggtattggcttgggacc 39631882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 42836078 - 42836039
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  42836078 taacccacttgggttggcctagtggtattggcttgggacc 42836039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 36013799 - 36013837
Alignment:
Q  178 gacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  36013799 gacaccgacacgtgtgattacattgaattatgtcatttt 36013837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 39499795 - 39499757
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  39499795 aacccacttgggttggcctagtggtattggcttgggacc 39499757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 2144533 - 2144578
Alignment:
Q  172 gtgtccgacacc-gacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||    
T  2144533 gtgtccgacacctgacacgtgtgattacattgaattatgtcatttt 2144578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 39138537 - 39138464
Alignment:
Q  144 aaggcgtgtccc-gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||  | | |||||| |||||||||| |||||    
T  39138537 aaggcgtgtccccgtgttagacatgtatcgtgtccgacaccgacatatataattacactgaattatgtgatttt 39138464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 44317232 - 44317325
Alignment:
Q  123 ttgcacggacacttctgattgaaggcgtgtcccgtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| ||||||| ||||||||||||||||  ||||||||||  | | ||||| |     ||||||| |||||||||||||||||||||||||    
T  44317232 ttgcaccgacacttttgattgaaggcgtgtctggtgtccgacacatcttgtgtcggtgttagacacttatgattacattgaattatgtcatttt 44317325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 48963997 - 48964101
Alignment:
Q  123 ttgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtcc----------gacaccgacacttgtgattacattgaattatgtc 211  Q
    ||||| |||||||||||||||||||  ||||||| ||| ||||| |||||||||||          |||||| ||||||||||||| |||||||||||||    
T  48963997 ttgcatggacacttctgattgaaggtatgtcccggtgttcgacacgtatcgtgtccacacttacacgacaccaacacttgtgattaaattgaattatgtc 48964096  T
Q  212 atttt 216  Q
    |||||    
T  48964097 atttt 48964101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 8234226 - 8234166
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||| ||||||||||||||| ||||||| | |||| |||||||||| |||||    
T  8234226 gtgtcggacatgtgtcgtgtccgacaccggcacttgtaactacactgaattatgttatttt 8234166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 25481970 - 25481922
Alignment:
Q  168 tatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||| |||||||| |||||| |||||||||| |||||    
T  25481970 tatcgtgtccgacaccaacacttgtaattacactgaattatgtgatttt 25481922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 35119383 - 35119419
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    ||||||||||||||||||||||||||||| |||||||    
T  35119383 aacccatttgggttggcctagtggtattgacttggga 35119419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 35513467 - 35513503
Alignment:
Q  312 acccatttgggttggcctagtggtattggcttgggac 348  Q
    ||||||||||||||||||||||||||| |||||||||    
T  35513467 acccatttgggttggcctagtggtatttgcttgggac 35513503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 45559198 - 45559234
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttgg 345  Q
    |||||||| ||||||||||||||||||||||||||||    
T  45559198 ttaacccacttgggttggcctagtggtattggcttgg 45559234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 45709784 - 45709748
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||||||||||||||||||||||||| ||||||||    
T  45709784 aacccatttgggttggcctagtggtattagcttggga 45709748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 22801743 - 22801778
Alignment:
Q  179 acaccgacacttgtgattacattgaattatgtcatt 214  Q
    ||||||||||||||||||||| ||||||||||||||    
T  22801743 acaccgacacttgtgattacagtgaattatgtcatt 22801778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 43590905 - 43590944
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttgggac 348  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  43590905 ttaacccagttgggttggcctggtggtattggcttgggac 43590944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 7438764 - 7438726
Alignment:
Q  178 gacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  7438764 gacaccgacacttgtaattacattgaattatgtgatttt 7438726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 17257990 - 17258028
Alignment:
Q  178 gacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  17257990 gacaccgacacttatgattacattgaattatgttatttt 17258028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 24513796 - 24513830
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttg 344  Q
    ||||||| |||||||||||||||||||||||||||    
T  24513796 taacccacttgggttggcctagtggtattggcttg 24513830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 26199509 - 26199547
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  26199509 aacccacttgagttggcctagtggtattggcttgggacc 26199547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 43215184 - 43215222
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  43215184 aacccacttgggttggtctagtggtattggcttgggacc 43215222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 10893304 - 10893349
Alignment:
Q  118 ctctattgcacggacacttctgattgaaggcgtgtcccgtgtccga 163  Q
    |||||||||||  |||||||||||||||||||||||  ||||||||    
T  10893304 ctctattgcaccaacacttctgattgaaggcgtgtctggtgtccga 10893349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 33181286 - 33181249
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggac 348  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  33181286 aacccatttgggttgccctagtggtataggcttgggac 33181249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 41487362 - 41487399
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggac 348  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  41487362 aacccacttgggttggcctggtggtattggcttgggac 41487399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 4161288 - 4161324
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||||||||||||| || |||||||||||||||||    
T  4161288 aacccatttgggttggtctggtggtattggcttggga 4161324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 10893864 - 10893908
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  10893864 gtgtcagacaccaacacatgtgattacattcaattatgtcatttt 10893908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 15680889 - 15680829
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| |||| || ||||||||||||||||||||| | |||||| | |||||||| |||||    
T  15680889 gtgtcggacacgtgtcgtgtccgacaccgacacttataattacactaaattatgtgatttt 15680829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 22801684 - 22801740
Alignment:
Q  132 cacttctgattgaaggcgtgtccc-gtgtccgacatgtatcgtgtccgacaccgaca 187  Q
    |||||||||||||||||||||||| |||||||||| || | ||||| ||||| ||||    
T  22801684 cacttctgattgaaggcgtgtcccagtgtccgacaagtgtggtgtcagacactgaca 22801740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 28155634 - 28155590
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||| ||||||  ||||||||| |||||    
T  28155634 gtgtccgacaccgacacttgtaattacaccgaattatgtaatttt 28155590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 33994286 - 33994238
Alignment:
Q  162 gacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgt 210  Q
    ||||||| ||||||| ||||||||||||||| ||| || ||||||||||    
T  33994286 gacatgtgtcgtgtctgacaccgacacttgtaattgcactgaattatgt 33994238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 43585945 - 43586044
Alignment:
Q  118 ctctattgcacggacacttctgattgaaggcgtgtccc-gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||| ||||||| ||||||||||||||||| ||||||  ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43585945 ctctgttgcacgaacacttctgattgaaggtgtgtccatgtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 43586044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 2438686 - 2438758
Alignment:
Q  145 aggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||| |||| ||||||| ||||||||||||||||||||||| |||||| |||||||||| |||||    
T  2438686 aggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 2438758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 12224315 - 12224250
Alignment:
Q  145 aggcgtgtccc-gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatg 209  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||    
T  12224315 aggcgtgtcccagtgtcggacacgtatcgtgtccgacaccgacacttgtaattacattggattatg 12224250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 5040800 - 5040754
Alignment:
Q  170 tcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  5040800 tcgtgtccgacaccgacacttgtaattacattgaattatgtgatttt 5040754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 18571052 - 18570992
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| || ||||||||||| |||||| ||||| | |||||||||||||||||||||||||    
T  18571052 gtgtcggatatgtatcgtgttcgacactgacacatatgattacattgaattatgtcatttt 18570992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 30404829 - 30404889
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||| ||||||||||| ||||||||||| |||||| |||||||||| |||||    
T  30404829 gtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactgaattatgtgatttt 30404889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 37559039 - 37558992
Alignment:
Q  174 gtccgacaccgacacttgtgattacattgaattatgtcattttgacaa 221  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  37559039 gtccgacaccgacacttgtaattacattgaattatgtgatttttacaa 37558992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 42327471 - 42327433
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  42327471 aacccacttgggttggcctagtggtattggcttgggacc 42327433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 42602554 - 42602592
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  42602554 aacccacttgggttggcctagtggtattggcttgggacc 42602592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 13501084 - 13501117
Alignment:
Q  183 cgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||||||||||||||    
T  13501084 cgacacttgtgattacattgaattatgtcatttt 13501117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 19536391 - 19536436
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||    
T  19536391 cgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 19536436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 1729805 - 1729853
Alignment:
Q  301 taaactttttaa-cccatttgggttggcctagtggtattggcttgggac 348  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  1729805 taaactttttaaacccacttgggttgggctagtggtattggcttgggac 1729853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 18840992 - 18841052
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||| ||||||| ||||||||||||||| |||||| | |||||||| |||||    
T  18840992 gtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacacttaattatgtaatttt 18841052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 24067304 - 24067268
Alignment:
Q  185 acacttgtgattacattgaattatgtcattttgacaa 221  Q
    |||||||||||||||||||||||||||||||| ||||    
T  24067304 acacttgtgattacattgaattatgtcattttcacaa 24067268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 14373429 - 14373464
Alignment:
Q  179 acaccgacacttgtgattacattgaattatgtcatt 214  Q
    |||||||||| |||||||||||||||||||||||||    
T  14373429 acaccgacacatgtgattacattgaattatgtcatt 14373464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 24067829 - 24067770
Alignment:
Q  157 tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||| |||| || ||||||| ||||||||||||||||||| |||| ||||||| ||||||    
T  24067829 tgtctgacacgtgtcgtgtctgacaccgacacttgtgatttcatttaattatgacatttt 24067770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 8300179 - 8300213
Alignment:
Q  122 attgcacggacacttctgattgaaggcgtgtcccg 156  Q
    |||||| ||||||||||||||||||||||||||||    
T  8300179 attgcatggacacttctgattgaaggcgtgtcccg 8300213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 14450707 - 14450745
Alignment:
Q  118 ctctattgcacggacacttctgattgaaggcgtgtcccg 156  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  14450707 ctctgttgcacggacacttctgattgaagacgtgtcccg 14450745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 15972939 - 15972893
Alignment:
Q  170 tcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||| |||||| |||||| ||| |||||    
T  15972939 tcgtgtccgacaccgacacttgtaattacactgaattgtgtaatttt 15972893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 21624332 - 21624294
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatg 209  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  21624332 cgtgtccgacaccgacacttgtaattacactgaattatg 21624294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 25931006 - 25931044
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  25931006 aacccatttgggttggcctggtggtattggtttgggacc 25931044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 29503271 - 29503309
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  29503271 aacccacttgggttggcctagtggtattggtttgggacc 29503309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 31026757 - 31026715
Alignment:
Q  174 gtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||  | |||||||||||||||||||||||||    
T  31026757 gtccgacaccgacatatatgattacattgaattatgtcatttt 31026715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 37480075 - 37480113
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  37480075 aacccacttgggttggcctggtggtattggcttgggacc 37480113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 345
Target Start/End: Original strand, 42922414 - 42922448
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgg 345  Q
    |||||| ||||||||||||||||||||||||||||    
T  42922414 aacccacttgggttggcctagtggtattggcttgg 42922448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 14450797 - 14450834
Alignment:
Q  179 acaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  14450797 acactgacacttgtgattacattgaattatgtgatttt 14450834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 16381731 - 16381694
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttggga 347  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  16381731 taacccacttgggttggcctagtggtataggcttggga 16381694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 17895821 - 17895894
Alignment:
Q  116 ggctctattgcacggacacttctgattgaaggcgtgtcc-cgtgtccgacatgtatcgtgtccgacaccgacac 188  Q
    |||||| ||||| |||||||| |||||||||||||||||   | ||||||| ||||||||| ||||||| ||||    
T  17895821 ggctctgttgcatggacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacac 17895894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 18255974 - 18256019
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||||| | |||||||| |||||||| |||||    
T  18255974 cgtgtccgacaccgacacttctaattacattaaattatgtgatttt 18256019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 20242693 - 20242766
Alignment:
Q  144 aaggcgtgtcc-cgtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||| |||||| |||| || | ||||||||||||||||| | | |||||| |||||||||| |||||    
T  20242693 aaggcgtgtcctcgtgtcagacacgtgttgtgtccgacaccgacacatataattacactgaattatgtgatttt 20242766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 37253266 - 37253315
Alignment:
Q  41 agtttgggttgggcttaactgaacctcataaaaccggcttgtcaggtgag 90  Q
    |||||||||||| | ||||||||||| | ||||||||||||| |||||||    
T  37253266 agtttgggttggacctaactgaaccttacaaaaccggcttgtgaggtgag 37253315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 39764958 - 39764991
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttg 344  Q
    ||||||||||||||| ||||||||||||||||||    
T  39764958 aacccatttgggttgacctagtggtattggcttg 39764991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 8300214 - 8300258
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| |||||||||||| |||||||| | ||||||||||||||    
T  8300214 gtgtccaacaccgacacttatgattacactaaattatgtcatttt 8300258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 33884115 - 33884071
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||| |||||||||||||||| |||||| ||||| ||||||||||    
T  33884115 gtgttcgacaccgacacttgtaattacactgaatcatgtcatttt 33884071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 37211880 - 37211924
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||  ||||||||| ||||||||||||| |||||||||    
T  37211880 gtgtccgacatagacacttgtaattacattgaattgtgtcatttt 37211924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 45000837 - 45000885
Alignment:
Q  168 tatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| || |||||||||||| | ||||||||||||||| |||||||||    
T  45000837 tatcgcgtacgacaccgacacatatgattacattgaattgtgtcatttt 45000885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 26402625 - 26402719
Alignment:
Q  123 ttgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||||  ||||| || ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26402625 ttgcacggacacttctgattgaagaagtgtctcggtgtccaacatgtatcgtgtccgacaccgacacttgtgattacactgaattatgtcatttt 26402719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 1334774 - 1334681
Alignment:
Q  124 tgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||||||||| |||||| | ||| ||||| | ||||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  1334774 tgcacggacacttctgattgaaggtgtgtcctggtgttcgacacgcatcgtgttcgacaccgacatttgtgattacattgaattatgtcctttt 1334681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 19369876 - 19369797
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtcattt--tgacaattttattcgtgtca--gtgtccgtgcttcatag 252  Q
    |||||||||||||||||||||||||||||||||||||||  | | |||||||| |||||||  |||||||||||||||||    
T  19369876 cgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgtcaacgtgtccgtgcttcatag 19369797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 6751862 - 6751921
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  6751862 gtgtctgacatgtata-tgtccgacaccgacacttgtgattacattgaattatgtcatttt 6751921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 26178596 - 26178527
Alignment:
Q  124 tgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgt 192  Q
    ||||||||||||||||||||||||  ||||||| ||||||||| || |||||||||||||||| ||||||    
T  26178596 tgcacggacacttctgattgaaggtatgtcccgatgtccgacacgtgtcgtgtccgacaccgatacttgt 26178527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 28715387 - 28715315
Alignment:
Q  145 aggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||| ||||  ||| || ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  28715387 aggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcatttt 28715315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 785455 - 785492
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtcatt 214  Q
    ||||||||||||||||||||||||||||||||||||||    
T  785455 cgacaccgacacttgtgattacattgaattatgtcatt 785492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 4878034 - 4877969
Alignment:
Q  145 aggcgtgtcccgtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgt 210  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||||||| |||| | | ||||||||    
T  4878034 aggcgtgtcctgtgtcggacatgtgtcgtgtccgacaccgacacttgtaattatacttaattatgt 4877969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 32225343 - 32225416
Alignment:
Q  131 acacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattga 203  Q
    ||||| ||||||||||| |||||| | ||||||||| |  ||||||||||||||||||| ||||||||||||||    
T  32225343 acactcctgattgaaggtgtgtccaggtgtccgacaggggtcgtgtccgacaccgacacctgtgattacattga 32225416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 28152178 - 28152118
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| |||| || ||||||||||||||||||||||| |||||| |||||||||| |||||    
T  28152178 gtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 28152118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 34595214 - 34595154
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| |||| || ||||||||||||||||||||||| |||||| |||||||||| |||||    
T  34595214 gtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 34595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 32978869 - 32978932
Alignment:
Q  148 cgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgt 210  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||| |||||| | ||||||||    
T  32978869 cgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacacttaattatgt 32978932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 12188379 - 12188341
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  12188379 aacccacttgggttggcctagtggtattggcttgggacc 12188341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 426508 - 426553
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||    
T  426508 cgtgtccgacaccgacacttgtaattacatttaattatgtgatttt 426553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 7265572 - 7265632
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||||| ||||||||||||||||| | | |||||| |||||||||| |||||    
T  7265572 gtgtcggacatgtattgtgtccgacaccgacacatataattacactgaattatgtgatttt 7265632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 7977825 - 7977869
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||| |||||| |||||||||| |||||    
T  7977825 gtgtccgacaccgacacttgtaattacactgaattatgtaatttt 7977869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 13364684 - 13364736
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattat 208  Q
    ||||| |||||||||||||||| |||||||||| | |||||||| ||||||||    
T  13364684 gtgtcagacatgtatcgtgtccaacaccgacacatatgattacactgaattat 13364736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 785384 - 785455
Alignment:
Q  118 ctctattgcacggacacttctgattgaaggcgtgtcc-cgtgtccgacatgtatcgtgtccgacaccgacac 188  Q
    |||| ||||||||||||||||||||||||| ||||||  ||||||||||   ||| ||| ||||||||||||    
T  785384 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatgttcgacaccgacac 785455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 216
Target Start/End: Complemental strand, 10031621 - 10031590
Alignment:
Q  185 acacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcatttt 10031590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 10158039 - 10158004
Alignment:
Q  181 accgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||| |||||||||||||||||||||||||||    
T  10158039 accgacacatgtgattacattgaattatgtcatttt 10158004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 19369924 - 19369889
Alignment:
Q  118 ctctattgcacggacacttctgattgaaggcgtgtc 153  Q
    |||| |||||||||||||||||||||||||||||||    
T  19369924 ctctgttgcacggacacttctgattgaaggcgtgtc 19369889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 7378045 - 7377999
Alignment:
Q  170 tcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||| | | ||||||||||||||||| |||||    
T  7378045 tcgtgtccgacaccgacacatataattacattgaattatgtgatttt 7377999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 349
Target Start/End: Complemental strand, 24507608 - 24507574
Alignment:
Q  315 catttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||||||||||||||||| |||||||||||||    
T  24507608 catttgggttggcctagtggtgttggcttgggacc 24507574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 2616476 - 2616509
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttg 344  Q
    |||||||||||||||||||||||||||| |||||    
T  2616476 aacccatttgggttggcctagtggtattagcttg 2616509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 6898274 - 6898319
Alignment:
Q  170 tcgtgtccgacaccgacacttgtgattacattgaattatgtcattt 215  Q
    ||||||||||||||||||||||| |||||| | |||||||| ||||    
T  6898274 tcgtgtccgacaccgacacttgtaattacacttaattatgtaattt 6898319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 16388211 - 16388248
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattat 208  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  16388211 cgtgtccgacaccgacacttgtaattacactgaattat 16388248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 20663589 - 20663508
Alignment:
Q  132 cacttctgattgaaggcgtgtcccgtgtccgacatgtatc-gtgtccgacaccgacacttgtgattacattgaattatgtca 212  Q
    ||||||| |||||||| ||||||  | ||| |||||| || ||||| |||||| |||||||||||| |||| ||||||||||    
T  20663589 cacttctaattgaaggtgtgtccactatccaacatgtttccgtgtcagacaccaacacttgtgattgcattcaattatgtca 20663508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 21418470 - 21418507
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggac 348  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  21418470 aacccagttgggttggcctggtggtattggcttgggac 21418507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 10339081 - 10339125
Alignment:
Q  145 aggcgtgtccc-gtgtccgacatgtatcgtgtccgacaccgacac 188  Q
    ||||||||||| ||||| ||||||| |||||||||||||||||||    
T  10339081 aggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacac 10339125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 33001268 - 33001328
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| |||| || ||||||||||||||||||| | | |||||||| |||||||| |||||    
T  33001268 gtgtcagacacgtgtcgtgtccgacaccgacacatataattacatttaattatgtgatttt 33001328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 34058018 - 34057974
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||||||| |||||||||| | ||||||||||||||    
T  34058018 gtgtctgacaccgacacatgtgattacagtcaattatgtcatttt 34057974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 34834873 - 34834965
Alignment:
Q  123 ttgcacggacacttctgattgaaggcgtgtccc-gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattt 215  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||| ||| ||||||| |||||||||||||||||    
T  34834873 ttgcacggacacttctgattgaaggcgtgtcccggtgtccgacatgtatcaagtccgacaccgatactcgtgatta-attgaattatgtcattt 34834965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 10955044 - 10954972
Alignment:
Q  145 aggcgtgtccc-gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||||||| |||||    
T  10955044 aggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaattatgtgatttt 10954972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 20503557 - 20503485
Alignment:
Q  145 aggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||| |||| ||||||| |||||||| |||||||||||||| |||||| ||||||||||||||||    
T  20503557 aggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtcatttt 20503485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 14338462 - 14338522
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||| | || ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  14338462 gtgtccgatacgtgtcgtgtctgacaccgacatttgtgattacattgaattatgtcatttt 14338522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 40993302 - 40993374
Alignment:
Q  145 aggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||| |||| ||||||| ||||||||||||||||||| | | |||||| |||||||||| |||||    
T  40993302 aggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgatttt 40993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 8170671 - 8170705
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttg 344  Q
    |||||||||||||||||||||||||||||||||||    
T  8170671 taacccatttgggttggcctagtggtattggcttg 8170705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 16991540 - 16991578
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttggga 347  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  16991540 ttaacccatttgggttggcctggtggtattggcttggga 16991578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 55401155 - 55401095
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| |||| || ||||||||||||||||||||||| |||||| | |||||||| |||||    
T  55401155 gtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgatttt 55401095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 14186647 - 14186686
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  14186647 taacccacttgggttggcctagtggtattgtcttgggacc 14186686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 25775574 - 25775535
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatgt 210  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  25775574 cgtgtccgacaccgacacttgtaattacactgaattatgt 25775535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 28918095 - 28918021
Alignment:
Q  145 aggcgtgtccc-gtgtccgacatgtatcgtgtcc--gacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||| ||||| |||| || ||||||||  ||||||||||||||| |||||| |||||||||| |||||    
T  28918095 aggcgtgtcccagtgtcggacacgtgtcgtgtccacgacaccgacacttgtaattacactgaattatgtgatttt 28918021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 35223021 - 35222958
Alignment:
Q  153 cccgtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||| |||| || || |||||||||||||||| | | ||||||||||||||||| |||||    
T  35223021 cccgtgtcagacacgtgtcatgtccgacaccgacacatataattacattgaattatgtgatttt 35222958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 44427900 - 44427861
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  44427900 cgacaccgacacatgtgattacattggattatgtcatttt 44427861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 49179715 - 49179750
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtca 212  Q
    |||||||||||||||||||||||| |||||||||||    
T  49179715 cgacaccgacacttgtgattacatcgaattatgtca 49179750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 8051214 - 8051252
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  8051214 aacccacttgggttggcctggtggtattggcttgggacc 8051252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 11092245 - 11092207
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  11092245 aacccacttgggttggcctagtggtgttggcttgggacc 11092207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 345
Target Start/End: Complemental strand, 16354968 - 16354934
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgg 345  Q
    |||||| ||||||||||||||||||||||||||||    
T  16354968 aacccacttgggttggcctagtggtattggcttgg 16354934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 26492184 - 26492234
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaatt 206  Q
    ||||| ||||||| |||||||||||||||| |||||| |||||| ||||||    
T  26492184 gtgtcagacatgtgtcgtgtccgacaccgatacttgtaattacactgaatt 26492234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 345
Target Start/End: Original strand, 26988996 - 26989030
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgg 345  Q
    |||||| ||||||||||||||||||||||||||||    
T  26988996 aacccacttgggttggcctagtggtattggcttgg 26989030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 345
Target Start/End: Complemental strand, 27093437 - 27093403
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgg 345  Q
    |||||| ||||||||||||||||||||||||||||    
T  27093437 aacccacttgggttggcctagtggtattggcttgg 27093403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 2667861 - 2667898
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttggga 347  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  2667861 taactcatttgggttggcctggtggtattggcttggga 2667898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 16000010 - 16000055
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||  ||||| |||||||||| |||||    
T  16000010 cgtgtccgacaccgacacttgtagttacactgaattatgttatttt 16000055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 19154631 - 19154664
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttg 344  Q
    |||||||||||||||||||||| |||||||||||    
T  19154631 aacccatttgggttggcctagttgtattggcttg 19154664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 23271984 - 23272029
Alignment:
Q  167 gtatcgtgtccgacaccgacacttgtgattacattgaattatgtca 212  Q
    ||||||||||| |||||||||| | |||||||||| ||||||||||    
T  23271984 gtatcgtgtccaacaccgacacatatgattacattcaattatgtca 23272029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 203090 - 203126
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||| |||||||||||||||||||||| |||||||    
T  203090 aacccacttgggttggcctagtggtattgacttggga 203126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 1502638 - 1502594
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| |||| ||||| |||||||||||| ||||||||||||||    
T  1502638 gtgtccaacacagacacatgtgattacattcaattatgtcatttt 1502594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 4222141 - 4222177
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||| |||||||||| |||||||||||||||||||    
T  4222141 aacccacttgggttggcttagtggtattggcttggga 4222177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 6984828 - 6984784
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||| |||||||||| |||||||| ||| |||||    
T  6984828 gtgtccgacaccgactcttgtgattatattgaattgtgttatttt 6984784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 7975418 - 7975454
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  7975418 aacccatttaggttggcctagtggtataggcttggga 7975454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 10499185 - 10499149
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||| |||||||||||| |||||||||||||||||    
T  10499185 aacccacttgggttggcctggtggtattggcttggga 10499149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 12987852 - 12987820
Alignment:
Q  118 ctctattgcacggacacttctgattgaaggcgt 150  Q
    |||||||||||||||| ||||||||||||||||    
T  12987852 ctctattgcacggacatttctgattgaaggcgt 12987820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 20691383 - 20691339
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||||||| | |||||||| ||||||||||||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcatttt 20691339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 27858404 - 27858360
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||| | |||||||||||| ||||| ||||||||    
T  27858404 gtgtccgacaccgacgcctgtgattacattcaattaggtcatttt 27858360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 31789046 - 31789010
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||| |||||||||||||||| |||||||||||||    
T  31789046 aacccacttgggttggcctagtgttattggcttggga 31789010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 46518628 - 46518664
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||| |||||||||| |||||||||||||||||||    
T  46518628 aacccacttgggttggcatagtggtattggcttggga 46518664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 51206348 - 51206392
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||||||  ||||| |||||||||| |||||    
T  51206348 gtgtccgacaccgacacttgtatttacactgaattatgtgatttt 51206392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 216
Target Start/End: Complemental strand, 37496834 - 37496724
Alignment:
Q  118 ctctattgcacggacacttctgattgaaggcgtgtccc-gtgtccgacatgtatcgtgtccg-----------acaccgacacttgtgattacattgaat 205  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||           |||||||||||||||||||||||||||    
T  37496834 ctctgttgcacggacacttatgattgaaggcgtgtcccggtgtccgacatgtgtcgtgtccggcaacgacacaacaccgacacttgtgattacattgaat 37496735  T
Q  206 tatgtcatttt 216  Q
    |||||||||||    
T  37496734 tatgtcatttt 37496724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 13307983 - 13307897
Alignment:
Q  131 acacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||| ||||  | |||| |||| || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  13307983 acacttctgattgaaggcatgtcatggtgtctgacacgtgtcgtgtccgacaccaacacttgtgattacattgaattatgtcatttt 13307897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 44362773 - 44362686
Alignment:
Q  130 gacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||| |||| |||||||| ||||||| | || ||||||| |||||| ||||||||||||||||| ||||||||||||||    
T  44362773 gacacttctgatttaaggtgtgtcccgatgtccgatacgtgtcgtgtctgacaccaacacttgtgattacattaaattatgtcatttt 44362686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 12797317 - 12797377
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  12797317 gtgtcagacatgtatcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 12797377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 16073474 - 16073421
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatg 209  Q
    ||||| ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  16073474 gtgtcggacatgtatcgtgtccgacaccgacacttgtaattacactgaattatg 16073421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 13117493 - 13117449
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  13117493 gtgtccgacaccgacacttgtgattacattgaattttgtcatttt 13117449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 21945583 - 21945523
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||| || |||||||||||||||||||| |||||| ||||||||||||||||    
T  21945583 gtgtcggacatgtgtcatgtccgacaccgacacttgtaattacactgaattatgtcatttt 21945523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 29205533 - 29205464
Alignment:
Q  148 cgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||| |||| ||||||| |||||||| |||||||||||||| |||||| |||||||||| |||||    
T  29205533 cgtgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtgatttt 29205464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 23292953 - 23293025
Alignment:
Q  145 aggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||| |||| |||| || ||||||||||||||||||||||| |||| | |||||||||| |||||    
T  23292953 aggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaattatgtgatttt 23293025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 28964215 - 28964287
Alignment:
Q  145 aggcgtgtccc-gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||| ||||| || |||| ||||||||||||| ||||||||| |||||| |||||||||| |||||    
T  28964215 aggcgtgtcccagtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaattatgtgatttt 28964287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 37109429 - 37109389
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  37109429 ttaacccacttgggttggcctagtggtattggcttgggacc 37109389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 11797630 - 11797667
Alignment:
Q  179 acaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  11797630 acaccgacacttgtgattacattaaattatgtcatttt 11797667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 42640594 - 42640549
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||    
T  42640594 cgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 42640549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 49431119 - 49431046
Alignment:
Q  144 aaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||| |||  |||| || ||||||||||||||||||||| | |||||| |||||||||| |||||    
T  49431119 aaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaattatgtgatttt 49431046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 4157229 - 4157169
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||| ||||||||||||||||||||||| ||| || | |||||||| |||||    
T  4157229 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaattgcactaaattatgtgatttt 4157169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 4157516 - 4157456
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||| ||||||||||||||||||||||| ||| || | |||||||| |||||    
T  4157516 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaattgcactaaattatgtgatttt 4157456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 10164861 - 10164893
Alignment:
Q  184 gacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||||||||||||||||||    
T  10164861 gacacttgtgattacattgaattatgtcatttt 10164893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 21434811 - 21434843
Alignment:
Q  311 aacccatttgggttggcctagtggtattggctt 343  Q
    |||||||||||||||||||||||||||||||||    
T  21434811 aacccatttgggttggcctagtggtattggctt 21434843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 27965586 - 27965550
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||| ||||||||||||||||||||||||||||||    
T  27965586 aacccacttgggttggcctagtggtattggcttggga 27965550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 1730566 - 1730527
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  1730566 taacccacttgggttgacctagtggtattggcttgggacc 1730527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 19229285 - 19229246
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttgggac 348  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  19229285 ttaacccatttgggttggcctggtggtattggcctgggac 19229246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 19238655 - 19238616
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttgggac 348  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  19238655 ttaacccacttgggttggcctggtggtattggcttgggac 19238616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 22799893 - 22799932
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  22799893 cgacactgacacgtgtgattacattgaattatgtcatttt 22799932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 30299006 - 30298967
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  30299006 cgacaccgacacttgtaattacactgaattatgtcatttt 30298967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 30327874 - 30327835
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  30327874 cgacaccgacacttgtaattacactgaattatgtcatttt 30327835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 39619047 - 39619090
Alignment:
Q  123 ttgcacggacacttctgattgaaggcgtgtccc-gtgtccgaca 165  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||    
T  39619047 ttgcacggacacttctgattgaaggtgtgtcccggtgtccgaca 39619090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 46545710 - 46545749
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  46545710 taacccacttgggttggcctagtggtattggcttgagacc 46545749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 52043071 - 52043118
Alignment:
Q  43 tttgggttgggcttaactgaacctcataaaaccggcttgtcaggtgag 90  Q
    |||||||||||||||||| ||| | ||||||||||||||| |||||||    
T  52043071 tttgggttgggcttaactcaactttataaaaccggcttgtaaggtgag 52043118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 347
Target Start/End: Complemental strand, 29312322 - 29312292
Alignment:
Q  317 tttgggttggcctagtggtattggcttggga 347  Q
    |||||||||||||||||||||||||||||||    
T  29312322 tttgggttggcctagtggtattggcttggga 29312292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 37443700 - 37443738
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  37443700 ttaacccacttgggttgacctagtggtattggcttggga 37443738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 54580016 - 54580062
Alignment:
Q  170 tcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||| | |||||| |||||||||| |||||    
T  54580016 tcgtgtccgacaccgacacttataattacactgaattatgtgatttt 54580062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 55427276 - 55427238
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  55427276 aacccacttgggttggcctggtggtattggcttgggacc 55427238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 6879459 - 6879504
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||||||| |||||| | |||||||| |||||    
T  6879459 cgtgtccgacaccgacacttgtaattacacttaattatgtgatttt 6879504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 9241102 - 9241065
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttggga 347  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  9241102 taacccacttgggttggcctggtggtattggcttggga 9241065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 13484088 - 13484043
Alignment:
Q  172 gtgtccgacaccgacacttgtgattaca-ttgaattatgtcatttt 216  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||    
T  13484088 gtgtccgacactgacacttgtgattacatttgaattatgttatttt 13484043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 47492436 - 47492399
Alignment:
Q  179 acaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  47492436 acactgacacttgtgattacattaaattatgtcatttt 47492399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 683115 - 683072
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||    
T  683115 gtgtccgacac-gacacatgtgattacattcaattatgtcatttt 683072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 8423685 - 8423757
Alignment:
Q  145 aggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||| |||| ||||  | |||||||||||||||||| || | |||||| |||||||||| |||||    
T  8423685 aggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaattatgtgatttt 8423757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 9299021 - 9298953
Alignment:
Q  149 gtgtcccgtgtccgacatgtatc-gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| ||||||||||||| || |||| ||| ||| |||  |||||| ||||||||||||||||||||    
T  9299021 gtgtcctgtgtccgacatgtgtcagtgttcgatacctacatgtgtgatgacattgaattatgtcatttt 9298953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 12310887 - 12310835
Alignment:
Q  165 atgtatcgtgtccg-acaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||| |||||||| | | |||||||||||||||||| ||||||    
T  12310887 atgtatcgtgtccggacaccgacccatatgattacattgaattatgccatttt 12310835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 31901256 - 31901316
Alignment:
Q  157 tgtccgacatgtatcg-tgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||| ||| |||||||||||  ||| |||||||||||| ||||||| ||||||    
T  31901256 tgtccgacatgtgtcggtgtccgacaccagcacatgtgattacattcaattatgccatttt 31901316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 35062520 - 35062472
Alignment:
Q  160 ccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattat 208  Q
    ||||||||| ||||||  |||||| |||||| |||||||||||||||||    
T  35062520 ccgacatgtgtcgtgttagacaccaacacttatgattacattgaattat 35062472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 40224489 - 40224537
Alignment:
Q  168 tatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||| ||||| |||||||||| | |||||||||| ||||||||||||||    
T  40224489 tatcatgtccaacaccgacacatatgattacattaaattatgtcatttt 40224537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 51250598 - 51250562
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||| |||||||||||| |||||||||||||||||    
T  51250598 aacccacttgggttggcctggtggtattggcttggga 51250562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 56049945 - 56049897
Alignment:
Q  167 gtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattt 215  Q
    ||||| |||| ||||||||||| | ||||||||||||| ||||||||||    
T  56049945 gtatcatgtctgacaccgacacatatgattacattgaactatgtcattt 56049897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 42874620 - 42874542
Alignment:
Q  139 gattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||| || |||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||    
T  42874620 gattgaaggcgtgtctcgatgtccgacatgtgttgtgtccaacactgacacttgtgattacattgaattatgtcatttt 42874542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 23874459 - 23874420
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  23874459 taacccacttgggttggcctagtggtattggcttgggacc 23874420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 4948718 - 4948672
Alignment:
Q  170 tcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||| |||||| |||||||||| |||||    
T  4948718 tcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 4948672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 16852340 - 16852378
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  16852340 aacccacttgggttggcctagtggtattggcttgggacc 16852378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 18540298 - 18540336
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  18540298 aacccacttgggttggcctagtggtattggcttgggacc 18540336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 19703563 - 19703525
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  19703563 aacccacttgggttggcctagtggtattggcttgggacc 19703525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 20873143 - 20873089
Alignment:
Q  162 gacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||| |||||||||||||||||||||||||| |||||| | |||||||| |||||    
T  20873143 gacacgtatcgtgtccgacaccgacacttgtaattacactaaattatgtgatttt 20873089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 26915201 - 26915279
Alignment:
Q  144 aaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgac-----acttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||  |||| |||| ||||||||||||||||||||     ||||||||||||||| ||||||||||||||    
T  26915201 aaggcgtgtcccaatgtctgacacgtatcgtgtccgacaccgacacgacacttgtgattacattaaattatgtcatttt 26915279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 31548294 - 31548332
Alignment:
Q  178 gacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  31548294 gacaccgacacatgtgattacattgaattatgtcatttt 31548332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 31119140 - 31119107
Alignment:
Q  183 cgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||||||||||||||    
T  31119140 cgacacttgtgattacattgaattatgtcatttt 31119107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 44462165 - 44462234
Alignment:
Q  148 cgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||| |||| ||||||||||||||| ||||||||||| | |||||| |||||||| |||| ||||    
T  44462165 cgtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgtgtcttttt 44462234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 44469698 - 44469767
Alignment:
Q  148 cgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||| |||| ||||||||||||||| ||||||||||| | |||||| |||||||| |||| ||||    
T  44469698 cgtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgtgtcttttt 44469767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 2203494 - 2203530
Alignment:
Q  313 cccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||| ||||||||||||||||||||||||||||||||    
T  2203494 cccacttgggttggcctagtggtattggcttgggacc 2203530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 3624582 - 3624618
Alignment:
Q  313 cccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||| ||||||||||||||||||||||||||||||||    
T  3624582 cccacttgggttggcctagtggtattggcttgggacc 3624618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 10497744 - 10497816
Alignment:
Q  117 gctctattgcacggacacttctgattgaaggcgtgtccc-gtgtccgacatgtatcgtgtccgacaccgacac 188  Q
    ||||| ||||||| |||| |||||||||||||||||||| ||||  |||||||||  ||| ||||||||||||    
T  10497744 gctctgttgcacgaacacctctgattgaaggcgtgtcccggtgtttgacatgtattatgttcgacaccgacac 10497816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 5307119 - 5307080
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  5307119 cgacaccgacacttatgatttcattgaattatgtcatttt 5307080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 10002163 - 10002202
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  10002163 cgacaccgacacatgtgattacattaaattatgtcatttt 10002202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 11819774 - 11819813
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttgggac 348  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  11819774 ttaacccatttgggttgccctagtggtataggcttgggac 11819813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 18170478 - 18170521
Alignment:
Q  173 tgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||    
T  18170478 tgtccgacaccgacatttgtaattacattgaattatgtaatttt 18170521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 18634046 - 18634089
Alignment:
Q  173 tgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||    
T  18634046 tgtccgacaccgacatttgtaattacattgaattatgtaatttt 18634089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 345
Target Start/End: Original strand, 5264544 - 5264578
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgg 345  Q
    |||||| ||||||||||||||||||||||||||||    
T  5264544 aacccacttgggttggcctagtggtattggcttgg 5264578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 20994534 - 20994496
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  20994534 aacccacttgggttggcctagtggtattgacttgggacc 20994496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 24295138 - 24295176
Alignment:
Q  178 gacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  24295138 gacaccgacacttgtgattacattaaattgtgtcatttt 24295176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 27733905 - 27733867
Alignment:
Q  178 gacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  27733905 gacaccaacacttgtgattacattgaattatatcatttt 27733867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 32157191 - 32157229
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  32157191 aacccatttgggttggcctggtggtattgacttgggacc 32157229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 34073931 - 34074017
Alignment:
Q  131 acacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| ||||||||||||||||  | ||| ||||| ||  |||||| || | |||||||| |||||||||| ||||||||||||||    
T  34073931 acacttttgattgaaggcgtgtcatgatgtgcgacacgtgacgtgtctgatatcgacacttatgattacattaaattatgtcatttt 34074017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 40332257 - 40332211
Alignment:
Q  170 tcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||| |||||||||||||| |||||| |||||||||| |||||    
T  40332257 tcgtgtcccacaccgacacttgtaattacactgaattatgtgatttt 40332211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 3826853 - 3826820
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttg 344  Q
    |||||| |||||||||||||||||||||||||||    
T  3826853 aacccacttgggttggcctagtggtattggcttg 3826820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 24613585 - 24613540
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||||||| |||||| | |||||||| |||||    
T  24613585 cgtgtccgacaccgacacttgtaattacacttaattatgtgatttt 24613540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 35690137 - 35690104
Alignment:
Q  314 ccatttgggttggcctagtggtattggcttggga 347  Q
    ||||||| ||||||||||||||||||||||||||    
T  35690137 ccatttgtgttggcctagtggtattggcttggga 35690104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 44780190 - 44780153
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggac 348  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  44780190 aacccacttgggttggcctagtggcattggcttgggac 44780153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 1433409 - 1433365
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||| | ||| ||||||||| |||||||||||||    
T  1433409 gtgtccgacaccgacgcatgttattacattggattatgtcatttt 1433365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 5813684 - 5813636
Alignment:
Q  145 aggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgt 192  Q
    |||||||||||| |||| |||| || |||||||||||||||||||||||    
T  5813684 aggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgt 5813636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 6530805 - 6530845
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||||| |||||||||||| ||||| |||||||||||||    
T  6530805 ttaacccacttgggttggcctggtggtgttggcttgggacc 6530845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 12985456 - 12985412
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||  | ||||||||||||||||||| |||||    
T  12985456 gtgtccgacaccgacatatatgattacattgaattatgtgatttt 12985412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 30483960 - 30483924
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  30483960 aacccacttgggttggcccagtggtattggcttggga 30483924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 35826309 - 35826349
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||||| ||||||||||||||||||| ||||||| ||||    
T  35826309 ttaacccaattgggttggcctagtggtagtggcttgagacc 35826349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 43292507 - 43292471
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    ||||||||||||||| | |||||||||||||||||||    
T  43292507 aacccatttgggttgtcttagtggtattggcttggga 43292471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 892554 - 892512
Alignment:
Q  307 ttttaacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  892554 ttttaacccatttgggttggcctagtggtattggcttgggacc 892512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 7621169 - 7621270
Alignment:
Q  117 gctctattgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtc-----cgacaccgacacttgtgattacattgaattatgt 210  Q
    ||||| |||||||||||||||||||||||| ||||||| | ||||||| | ||||||||||      |||||||| ||||||||||||||| ||||||||    
T  7621169 gctctgttgcacggacacttctgattgaagacgtgtcctgatgtccgataagtatcgtgtctgatatgacaccgatacttgtgattacattaaattatgt 7621268  T
Q  211 ca 212  Q
    ||    
T  7621269 ca 7621270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 11084395 - 11084325
Alignment:
Q  141 ttgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgt 210  Q
    |||||||||||||||| ||| |||||||| |||||||| ||||||||||| |||| ||| |||||||||||    
T  11084395 ttgaaggcgtgtcccggtgttcgacatgtgtcgtgtccaacaccgacactagtgactacgttgaattatgt 11084325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 19167571 - 19167615
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||    
T  19167571 gtgtctgacaccgacacttgtgattacattgaattgtgtcatttt 19167615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 21576712 - 21576784
Alignment:
Q  145 aggcgtgtccc-gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||| ||||| |||| || |||||||||||| |||||||||| |||||| |||||||||| |||||    
T  21576712 aggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaattatgtgatttt 21576784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 346
Target Start/End: Complemental strand, 5390926 - 5390891
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggg 346  Q
    ||||||||||||||||||||||||||||||||||||    
T  5390926 aacccatttgggttggcctagtggtattggcttggg 5390891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 30080435 - 30080540
Alignment:
Q  123 ttgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacac-----------cgacacttgtgattacattgaattatgt 210  Q
    |||||| ||||||||| |||||||| |||||||| |||||||||||| || ||||||||||           ||| ||||||||||||||||||||||||    
T  30080435 ttgcactgacacttctaattgaaggagtgtcccggtgtccgacatgtgtcatgtccgacactaacaccacaccgatacttgtgattacattgaattatgt 30080534  T
Q  211 catttt 216  Q
    ||||||    
T  30080535 catttt 30080540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 8420089 - 8420047
Alignment:
Q  174 gtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  8420089 gtccgacaccgacacttgtaattacattgaattatgttatttt 8420047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 15884054 - 15884008
Alignment:
Q  170 tcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||| |||||| |||||||||| |||||    
T  15884054 tcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 15884008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 21549213 - 21549175
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  21549213 aacccacttgggttggcctagtggtattggcttgggacc 21549175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 6247687 - 6247642
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||    
T  6247687 cgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 6247642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 2548451 - 2548407
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||    
T  2548451 gtgtccgacaccgacacttatgattacactgaattatgtaatttt 2548407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 16207586 - 16207626
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtca 212  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  16207586 gtgtctgacaccaacacttgtgattacattgaattatgtca 16207626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 21191051 - 21191095
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||| |||||| |||||||||| |||||    
T  21191051 gtgtccgacaccgacacttgtaattacactgaattatgtgatttt 21191095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 25627055 - 25627091
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttgg 345  Q
    |||||||| ||||||||||||||||||||||||||||    
T  25627055 ttaacccacttgggttggcctagtggtattggcttgg 25627091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 29075777 - 29075817
Alignment:
Q  307 ttttaacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  29075777 ttttaacccacttgggtttgcctagtggtattggcttggga 29075817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 345
Target Start/End: Complemental strand, 7918546 - 7918511
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttgg 345  Q
    ||||||| ||||||||||||||||||||||||||||    
T  7918546 taacccacttgggttggcctagtggtattggcttgg 7918511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 154
Target Start/End: Original strand, 9031883 - 9031914
Alignment:
Q  123 ttgcacggacacttctgattgaaggcgtgtcc 154  Q
    ||||||||||||||||||||||||||||||||    
T  9031883 ttgcacggacacttctgattgaaggcgtgtcc 9031914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 10009884 - 10009829
Alignment:
Q  178 gacaccgacacttgtgattacattgaattatgtcattttgacaattttattcgtgt 233  Q
    |||| |||||| |||||||||||||||||||||||||||  || ||||||| ||||    
T  10009884 gacaacgacacatgtgattacattgaattatgtcattttctcagttttattagtgt 10009829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 10010617 - 10010574
Alignment:
Q  173 tgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| |||||||||| |||||||||| ||||||||||||||||    
T  10010617 tgtcccacaccgacacatgtgattacaatgaattatgtcatttt 10010574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 24906297 - 24906340
Alignment:
Q  173 tgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||    
T  24906297 tgtccgataccgacacttgtaattacactgaattatgtcatttt 24906340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 16436625 - 16436655
Alignment:
Q  318 ttgggttggcctagtggtattggcttgggac 348  Q
    |||||||||||||||||||||||||||||||    
T  16436625 ttgggttggcctagtggtattggcttgggac 16436655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 17123139 - 17123097
Alignment:
Q  145 aggcgtgtcccgtgtccgacatgtatcgtgtccgacaccgaca 187  Q
    |||||||||||||||| ||||||| |||||||| |||||||||    
T  17123139 aggcgtgtcccgtgtcggacatgtttcgtgtccaacaccgaca 17123097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 21319946 - 21319984
Alignment:
Q  178 gacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  21319946 gacatcgacacttgtgattacattgaattatatcatttt 21319984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 21589288 - 21589326
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  21589288 aacccacttgggttggcctggtggtattggcttgggacc 21589326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 30883274 - 30883236
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  30883274 aacccacttgggttggtctagtggtattggcttgggacc 30883236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 42029826 - 42029772
Alignment:
Q  162 gacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||| |||||||||||||||| || | | ||||||||||||||||| |||||    
T  42029826 gacatgtgtcgtgtccgacaccgatacatataattacattgaattatgtgatttt 42029772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 4445204 - 4445155
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcattttgacaa 221  Q
    ||||||||||||||||||||||||| |||| ||||  |||||||| ||||    
T  4445204 gtgtccgacaccgacacttgtgattgcattaaatttggtcattttcacaa 4445155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 22737082 - 22737119
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggac 348  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  22737082 aacccacttgggttggtctagtggtattggcttgggac 22737119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 26078127 - 26078090
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggac 348  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  26078127 aacccacttgggttggcctagtggtattggtttgggac 26078090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 11596425 - 11596494
Alignment:
Q  145 aggcgtgtcccgtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||| ||||| || |  |||||||||| |||||||| | ||  |||||||||||||||||||||||    
T  11596425 aggcgtgtccagtgtcagatacatatcgtgtccaacaccgacgcatg--attacattgaattatgtcatttt 11596494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 15294991 - 15294951
Alignment:
Q  176 ccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  15294991 ccgaaaccggcacttgtgattaccttgaattatgtcatttt 15294951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 26598524 - 26598560
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||| |||| |||||||||||||||||||||||||    
T  26598524 aacccacttggattggcctagtggtattggcttggga 26598560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 27932315 - 27932255
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||| || |||||||||||||| | | |||| |||||| |||||||||| |||||    
T  27932315 gtgtccgacacgtgtcgtgtccgacaccaagatttgtaattacactgaattatgtaatttt 27932255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 28588653 - 28588713
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| || |||| ||||||||||||||||||| | | |||||| |||||||||| |||||    
T  28588653 gtgtcagatatgtgtcgtgtccgacaccgacacctataattacactgaattatgtgatttt 28588713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 30502367 - 30502427
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||| ||||||||||||||||||| | | |||||| ||||||| || |||||    
T  30502367 gtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgatttt 30502427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 30542710 - 30542770
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||| ||||||||||||||||||| | | |||||| ||||||| || |||||    
T  30542710 gtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgatttt 30542770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 31973138 - 31973190
Alignment:
Q  38 tagagtttgggttgggcttaactgaacctcataaaaccggcttgtcaggtgag 90  Q
    |||| |||||||||||| ||||||||||| | ||||||||| ||| |||||||    
T  31973138 tagaatttgggttgggcctaactgaaccttacaaaaccggcatgtaaggtgag 31973190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 32444825 - 32444789
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtcat 213  Q
    |||||||||||| | ||||||||||||||||||||||    
T  32444825 cgacaccgacacatttgattacattgaattatgtcat 32444789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 33178089 - 33178045
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||| |||||| | |||||||| |||||    
T  33178089 gtgtccgacaccgacacttgtaattacactaaattatgtgatttt 33178045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 33709706 - 33709669
Alignment:
Q  308 tttaacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  33709706 tttaacccatttgggttggcctagtgg--ttggcttggga 33709669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 38784858 - 38784826
Alignment:
Q  184 gacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||||| |||||||    
T  38784858 gacacttgtgattacattgaattatatcatttt 38784826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 38078647 - 38078700
Alignment:
Q  163 acatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  38078647 acatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtgatttt 38078700  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 1815349 - 1815277
Alignment:
Q  145 aggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||| |||| ||||||| ||||||| ||||||||||||||| |||||| |||||||||| |||||    
T  1815349 aggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaattatgtgatttt 1815277  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 19637848 - 19637788
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| || |||||||||||||||||||||||| | |||||||||||||| ||||||||||    
T  19637848 gtgtcggatatgtatcgtgtccgacaccgacacatatgattacattgaataatgtcatttt 19637788  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 50195459 - 50195504
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||    
T  50195459 cgtgtccgacaccgacacatgtgattacattcaattatgtcatttt 50195504  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 9165272 - 9165233
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  9165272 taacccacttgggttggcctagtggtattggcttgggacc 9165233  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 40258912 - 40259010
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattttgacaa--ttttattcgtgtcagtgtccgtgcttcatag 252  Q
    ||||| |||| || ||||||| ||||||||||||||| |||||| |||||||||| |||||  |||  | ||| | ||||| |||||||||||||||||    
T  40258912 gtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgattttttcaaattattaattgtgtcggtgtccgtgcttcatag 40259010  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 17007954 - 17008000
Alignment:
Q  170 tcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||| |||||||||||||| |||||||||||| |||||    
T  17007954 tcgtgtccgacactgacacttgtgattatattgaattatgtaatttt 17008000  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 31667487 - 31667445
Alignment:
Q  174 gtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||| |||||||||||| ||||||||||||||    
T  31667487 gtccgacaccgacacatgtgattacatttaattatgtcatttt 31667445  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 51410091 - 51410045
Alignment:
Q  170 tcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||| |||||| |||||||||| |||||    
T  51410091 tcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 51410045  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 7988441 - 7988486
Alignment:
Q  167 gtatcgtgtccgacaccgacacttgtgattacattgaattatgtca 212  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||    
T  7988441 gtattgtgtccgacaccaacacttatgattacattgaattatgtca 7988486  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 14613060 - 14613113
Alignment:
Q  130 gacacttctgattgaaggcgtgtc-ccgtgtccgacatgtatcgtgtccgacac 182  Q
    |||||||||||||||||||||||| |||| |||||||| | |||||||||||||    
T  14613060 gacacttctgattgaaggcgtgtctccgtatccgacatatgtcgtgtccgacac 14613113  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 31794340 - 31794303
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggac 348  Q
    |||||| |||||||||||||||||||||||||||||||    
T  31794340 aacccacttgggttggcctagtggtattggcttgggac 31794303  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 8177258 - 8177222
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8177258 aacccatttgagttggcctagtggtattggcttggga 8177222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 17745334 - 17745294
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  17745334 ttaacgcacttgggttggcctagtggtattggcttgggacc 17745294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 18337393 - 18337349
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||| |||||| |||||||||| |||||    
T  18337393 gtgtccgacaccgacacttgtaattacactgaattatgtgatttt 18337349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 22515866 - 22515926
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| || |||| ||||||||||||||||||||||| |||||| | |||||||| |||||    
T  22515866 gtgtcggatatgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgatttt 22515926  T

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Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 44126816 - 44126923
Alignment:
Q  118 ctctattgcacggacacttctgattgaaggcgtg-tcccgtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||| ||||||  |||||||| |||||||||||| | | ||||||   |||| |||||||||||||  ||| || |||||||| ||||||||||||||||    
T  44126816 ctctgttgcaccaacacttctaattgaaggcgtgcttcggtgtcc---atgtgtcgtgtccgacactaacatttatgattacagtgaattatgtcatttt 44126912  T
Q  217 gacaattttat 227  Q
     | ||||||||    
T  44126913 taaaattttat 44126923  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 51703777 - 51703813
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttgg 345  Q
    |||||||||||||||||| ||||||||||||||||||    
T  51703777 ttaacccatttgggttggtctagtggtattggcttgg 51703813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 10526822 - 10526861
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  10526822 taacccatttgggttggtccagtggtattggcttgggacc 10526861  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 19058850 - 19058889
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatgt 210  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  19058850 cgtgtccgacaccgacacttgtaattacactgaattatgt 19058889  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 24462270 - 24462309
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  24462270 cgacactgaaacttgtgattacattgaattatgtcatttt 24462309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 26390133 - 26390172
Alignment:
Q  177 cgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  26390133 cgacactgacacttgtgattacattcaattatgtcatttt 26390172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 38979019 - 38978980
Alignment:
Q  310 taacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  38979019 taacccatttgggttggcctagtggtattgacttgagacc 38978980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 52116859 - 52116820
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttgggac 348  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  52116859 ttaacccagttgggttggcctggtggtattggcttgggac 52116820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 11063556 - 11063594
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggacc 349  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  11063556 aacccatttgggttgatctagtggtattggcttgggacc 11063594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 21547549 - 21547519
Alignment:
Q  318 ttgggttggcctagtggtattggcttgggac 348  Q
    |||||||||||||||||||||||||||||||    
T  21547549 ttgggttggcctagtggtattggcttgggac 21547519  T

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Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 22881609 - 22881655
Alignment:
Q  170 tcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||| |||||| | |||||||| |||||    
T  22881609 tcgtgtccgacaccgacacttgtaattacactaaattatgtgatttt 22881655  T

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Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 24334699 - 24334737
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatg 209  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  24334699 cgtgtccgacaccgacacttgtaattacactgaattatg 24334737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 28170439 - 28170401
Alignment:
Q  178 gacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  28170439 gacactgacacttgttattacattgaattatgtcatttt 28170401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 345
Target Start/End: Original strand, 36371470 - 36371504
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgg 345  Q
    |||||| ||||||||||||||||||||||||||||    
T  36371470 aacccacttgggttggcctagtggtattggcttgg 36371504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 40686693 - 40686731
Alignment:
Q  127 acggacacttctgattgaaggcgtgtcccgtgtccgaca 165  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  40686693 acggacacttctgattgaaggcgtgttccgtgtctgaca 40686731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 6122794 - 6122831
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttgggac 348  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  6122794 aacccatttgggttgccctagtggtataggcttgggac 6122831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 7888155 - 7888122
Alignment:
Q  176 ccgacaccgacacttgtgattacattgaattatg 209  Q
    |||||||||||||||||||||||||| |||||||    
T  7888155 ccgacaccgacacttgtgattacattaaattatg 7888122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 14332465 - 14332428
Alignment:
Q  179 acaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||  |||||||||||||||||||||||||||    
T  14332465 acaccgacatatgtgattacattgaattatgtcatttt 14332428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 15581220 - 15581179
Alignment:
Q  308 tttaacccatttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||||| |||||||||||| ||||| |||||||||||||    
T  15581220 tttaacccacttgggttggcctggtggtgttggcttgggacc 15581179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 17893939 - 17893848
Alignment:
Q  162 gacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattt--tgacaattttattcgtgtc--agtgtccgtgcttca 249  Q
    |||| ||||||||| |||||||||||| |||||| | ||| |||||| ||||||  | | |||||||| ||||||  |||||||||||||||    
T  17893939 gacacgtatcgtgtacgacaccgacacgtgtgataatattaaattatatcattttcttaaaattttatacgtgtcgaagtgtccgtgcttca 17893848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 36878542 - 36878481
Alignment:
Q  155 cgtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| ||||||| ||||||| ||||||||||| | | |||||| |||||||||| |||||    
T  36878542 cgtgtcggacatgtttcgtgtcagacaccgacacctataattacactgaattatgtgatttt 36878481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 41877464 - 41877509
Alignment:
Q  171 cgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||||||||||||||||||| |||||| | |||||||| |||||    
T  41877464 cgtgtccgacaccgacacttgtaattacactaaattatgtaatttt 41877509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 50901579 - 50901620
Alignment:
Q  309 ttaacccatttgggttggcctagtggt-attggcttgggacc 349  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  50901579 ttaacccacttgggttggcctagtggtaattggcttgggacc 50901620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 6650595 - 6650631
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||| || |||||||||||||||||||||||||||    
T  6650595 aacccaattaggttggcctagtggtattggcttggga 6650631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 11412763 - 11412807
Alignment:
Q  172 gtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| |||||||||| | |||| ||||||||||||||||||||    
T  11412763 gtgtccaacaccgacacctatgatcacattgaattatgtcatttt 11412807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 19528403 - 19528367
Alignment:
Q  311 aacccatttgggttggcctagtggtattggcttggga 347  Q
    |||||| |||||||||||| |||||||||||||||||    
T  19528403 aacccacttgggttggcctggtggtattggcttggga 19528367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 33202983 - 33202923
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| || |||||||||||| |||||| | || | |||||||||||| ||||||||||||    
T  33202983 gtgtcggatatgtatcgtgtctgacaccaaaacatatgattacattgatttatgtcatttt 33202923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 33700847 - 33700815
Alignment:
Q  313 cccatttgggttggcctagtggtattggcttgg 345  Q
    |||| ||||||||||||||||||||||||||||    
T  33700847 cccacttgggttggcctagtggtattggcttgg 33700815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 42787205 - 42787245
Alignment:
Q  308 tttaacccatttgggttggcctagtggtattggcttgggac 348  Q
    ||||||||| || ||||||||||||||||||| ||||||||    
T  42787205 tttaacccagttaggttggcctagtggtattgacttgggac 42787245  T

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Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 46348362 - 46348414
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattat 208  Q
    ||||| |||| || ||||||||||||||||||||||| |||||| | ||||||    
T  46348362 gtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattat 46348414  T

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Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 47989600 - 47989556
Alignment:
Q  145 aggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacac 188  Q
    |||||||||||| |||| ||||||| |||||||||||||||||||    
T  47989600 aggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacac 47989556  T

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Target: scaffold0314 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 9060 - 8968
Alignment:
Q  123 ttgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    |||||| ||||||||||||||||||||||||||| |||||||||   |     |  ||||||||||||||||||||| |||||||||||||||||    
T  9060 ttgcacagacacttctgattgaaggcgtgtcccggtgtccgacacacacgacat--gacaccgacacttgtgattacgttgaattatgtcatttt 8968  T

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Target: scaffold0083 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 45509 - 45563
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgt 210  Q
    ||||| |||| || ||||||||||||||||||||||| |||||| ||||||||||    
T  45509 gtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgt 45563  T

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Target: scaffold0122 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 6990 - 6958
Alignment:
Q  316 atttgggttggcctagtggtattggcttgggac 348  Q
    |||||||||||||||||||||||||||||||||    
T  6990 atttgggttggcctagtggtattggcttgggac 6958  T

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Target: scaffold0122; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 10247 - 10313
Alignment:
Q  118 ctctattgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacacc 183  Q
    |||| |||||| |||||||||||||||||| |||||| | ||||||||| | |||| ||||||||||    
T  10247 ctctcttgcacagacacttctgattgaaggtgtgtcctgctgtccgacacgcatcgcgtccgacacc 10313  T

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Target: scaffold0050 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 70358 - 70298
Alignment:
Q  156 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||| |||| || ||||||||||||||||||||| | |||||| |||||||||| |||||    
T  70358 gtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgttatttt 70298  T

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Target: scaffold0118 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 344
Target Start/End: Complemental strand, 41711 - 41676
Alignment:
Q  309 ttaacccatttgggttggcctagtggtattggcttg 344  Q
    |||||||| |||||||||||||||||||||||||||    
T  41711 ttaacccacttgggttggcctagtggtattggcttg 41676  T

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Target: scaffold0652 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 455 - 501
Alignment:
Q  170 tcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 216  Q
    ||||||||||||||||||||||| |||||| |||||| ||| |||||    
T  455 tcgtgtccgacaccgacacttgtaattacactgaattttgtgatttt 501  T

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Target: scaffold0504 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 8642 - 8680
Alignment:
Q  118 ctctattgcacggacacttctgattgaaggcgtgtcccg 156  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  8642 ctctgttgcacggacacttctgattgaaggcatgtcccg 8680  T

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Target: scaffold0337 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 349
Target Start/End: Original strand, 1757 - 1791
Alignment:
Q  315 catttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||||||||||||||||| |||||||||||||    
T  1757 catttgggttggcctagtggtgttggcttgggacc 1791  T

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Target: scaffold0065 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 349
Target Start/End: Original strand, 12193 - 12227
Alignment:
Q  315 catttgggttggcctagtggtattggcttgggacc 349  Q
    ||||||||||||||||||||| |||||||||||||    
T  12193 catttgggttggcctagtggtgttggcttgggacc 12227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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