View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_52 (Length: 336)
Name: NF1250_low_52
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 1701950 - 1701667
Alignment:
| Q |
1 |
tcacctcgccaccgtcacaaaacctccaccaaacgtcgttcaatggcgtcatcttcctccgaacgacgtgccaagaagcattcttttgaccaagatgatc |
100 |
Q |
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| T |
1701950 |
tcacctcgccaccgtcacaaaacctccaccaaacgtcgttcaatggcgtcatcttcctccgaacgacgtgccaagaagcattcttttgaccaagatgatc |
1701851 |
T |
|
| Q |
101 |
tcaccaacaatggcttctctgccatttcacttccttttagtgtttgtggtaatgatcttcgtcgctgtgtctccacaccggagaagactactacaccgcc |
200 |
Q |
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| T |
1701850 |
tcaccaacaatggcttctctgccatttcacttccttttagtgtttgtggtaatgatcttcgtcgctgtgtctccacaccggagaagactactgcaccgcc |
1701751 |
T |
|
| Q |
201 |
ggagcagtccaatttaccggcggtgaaagaggctggtttgccgcctttggctccgagtctaaggagatctttgtctgatgatgt |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
1701750 |
ggagcagtccaatttaccggcggtgaaagaggctggtttgccgcctttggctctgagtctaaggagatctttgtctgctgatgt |
1701667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 27462004 - 27462106
Alignment:
| Q |
71 |
ccaagaagcattcttttgac-caagatgatctcaccaacaatggcttctctgccatttcacttccttttagtgtttgtggtaatgatcttcgtcgctgtg |
169 |
Q |
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|||||||||||||||||||| |||| |||||||| |||||||||||||||||| |||||||||| ||| | |||| |||| |||| | ||||||| |
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| T |
27462004 |
ccaagaagcattcttttgacgcaagca-atctcacccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatgctcttagccgctgtg |
27462102 |
T |
|
| Q |
170 |
tctc |
173 |
Q |
| |
|
|||| |
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| T |
27462103 |
tctc |
27462106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 25518526 - 25518588
Alignment:
| Q |
109 |
aatggcttctctgccatttcacttccttttagtgtttgtggtaatgatcttcgtcgctgtgtc |
171 |
Q |
| |
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||||||||||| |||||| |||||||||| ||| || ||||||||| |||||| |||||||| |
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| T |
25518526 |
aatggcttctccgccattacacttcctttcagtcttcgtggtaatgctcttcgctgctgtgtc |
25518588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 29425338 - 29425402
Alignment:
| Q |
109 |
aatggcttctctgccatttcacttccttttagtgtttgtggtaatgatcttcgtcgctgtgtctc |
173 |
Q |
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|||||||||||||||||| |||||||||| ||| | |||| |||| |||| | ||||||||||| |
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| T |
29425338 |
aatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctc |
29425402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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