View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_55 (Length: 330)
Name: NF1250_low_55
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 30 - 243
Target Start/End: Complemental strand, 27603344 - 27603131
Alignment:
| Q |
30 |
atcttgtcctaatctcgaaggcgacgtagagatgtgcacaacaagttggaaatttgagagtgacccaacacttctacaaaattcaagattataaatccca |
129 |
Q |
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| T |
27603344 |
atcttgtcctaatctcgaaggcgaggtagagatgtgcacaacaagttggaaatttgagagtgacccaacacttctacaaaattcaagattataaatcaca |
27603245 |
T |
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| Q |
130 |
aattgggatggcttgaatggactgactgaaacattaggactggggtatcggtctacacactgttgagaggaaatcaaggggttgaagattgaaggggtga |
229 |
Q |
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| T |
27603244 |
aattgggatggcttgaatggactgactgaaacattaggactggggtatcggtctacacactgttgagaggaaatcaaggggttgaagattgaaggggtga |
27603145 |
T |
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| Q |
230 |
agccagaagaaagg |
243 |
Q |
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|||||||||||||| |
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| T |
27603144 |
agccagaagaaagg |
27603131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 52211016 - 52211155
Alignment:
| Q |
36 |
tcctaatctcgaaggcgacgtagagatgtgcacaacaagttggaaatttgagagtgacccaacacttctacaaaattcaagattataaatcccaaattgg |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
52211016 |
tcctaatctcgaaggcgacgtagagatgtgcacaacaagttggaaatttgagagtgagccaacacttttacaattttcaagattataaaccccaaattgg |
52211115 |
T |
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| Q |
136 |
gatggcttgaatggactgactgaaacattaggactggggt |
175 |
Q |
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| T |
52211116 |
gatggcttgaatggactgactgaaacattagaaccggggt |
52211155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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