View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_56 (Length: 327)

Name: NF1250_low_56
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_56
NF1250_low_56
[»] chr3 (7 HSPs)
chr3 (30-287)||(40946784-40947038)
chr3 (134-224)||(40925892-40925982)
chr3 (239-287)||(40926396-40926444)
chr3 (38-100)||(40921865-40921927)
chr3 (139-206)||(40915803-40915870)
chr3 (101-136)||(40921956-40921991)
chr3 (287-320)||(9109720-9109753)
[»] scaffold1455 (1 HSPs)
scaffold1455 (287-320)||(1129-1162)
[»] scaffold0070 (1 HSPs)
scaffold0070 (287-320)||(26266-26299)
[»] chr5 (2 HSPs)
chr5 (287-320)||(4298799-4298832)
chr5 (288-320)||(41589715-41589747)
[»] chr2 (1 HSPs)
chr2 (287-320)||(43724630-43724663)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 287
Target Start/End: Original strand, 40946784 - 40947038
Alignment:
Q  30 gactccacgcatgggtgcatattgttgccatcgtcattgttaatttgatatattcccttgctgcttagcttgatacatatagtaacaaaaatatgtgtaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40946784 gactccacgcatgggtgcatattgttgccatcgtcattgttaatttgatatattctcttgctgcttagcttgatacatatagtaacaaaaatatgtgtaa 40946883  T
Q  130 atactatacaaagattgttgctaagacttctattaaagcgaggtcgttgggtgtgcatctaccttcataaaataatgccagtattaaatttcatgnnnnn 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||         
T  40946884 atactatacaaagattgttgctaagacttctattaaagcgaggtcgttgg--gtgcatctaccttcataaaataatgccagtattaaatttcatgttttt 40946981  T
Q  230 nnncgggtac-aaatttcatatttttaaagttgtgagatatagggaaaattaactagta 287  Q
         ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40946982 ttt--ggtacaaaatttcatatttttaaagttgtgagatatagggaaaattaactagta 40947038  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 40925892 - 40925982
Alignment:
Q  134 tatacaaagattgttgctaagacttctattaaagcgaggtcgttgggtgtgcatctaccttcataaaataatgccagtattaaatttcatg 224  Q
    |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40925892 tatacaaagattgttgctaagacttctattaatgcgagattgttgggtgtgcatctaccttcataaaataatgccggtattaaatttcatg 40925982  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 40926396 - 40926444
Alignment:
Q  239 caaatttcatatttttaaagttgtgagatatagggaaaattaactagta 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40926396 caaatttcatatttttaaagttgtgagatatagggaaaattaactagta 40926444  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 40921865 - 40921927
Alignment:
Q  38 gcatgggtgcatattgttgccatcgtcattgttaatttgatatattcccttgctgcttagctt 100  Q
    |||||||||||||| |||||||||||||||||| |||||||| |||| |||||||||||||||    
T  40921865 gcatgggtgcatatcgttgccatcgtcattgtttatttgatacattctcttgctgcttagctt 40921927  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 40915803 - 40915870
Alignment:
Q  139 aaagattgttgctaagacttctattaaagcgaggtcgttgggtgtgcatctaccttcataaaataatg 206  Q
    |||||||||| | || |||| ||||||||||||||||||||||    ||||||||||||||| |||||    
T  40915803 aaagattgtttccaacacttgtattaaagcgaggtcgttgggtccatatctaccttcataaattaatg 40915870  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 40921956 - 40921991
Alignment:
Q  101 gatacatatagtaacaaaaatatgtgtaaatactat 136  Q
    ||||||||||| ||||||||||||||||||||||||    
T  40921956 gatacatatagcaacaaaaatatgtgtaaatactat 40921991  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 9109720 - 9109753
Alignment:
Q  287 atgtcgtttttgtttttggttctgatctgtggtg 320  Q
    |||||||||||||||||||||||||| |||||||    
T  9109720 atgtcgtttttgtttttggttctgatttgtggtg 9109753  T

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Target: scaffold1455 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 1129 - 1162
Alignment:
Q  287 atgtcgtttttgtttttggttctgatctgtggtg 320  Q
    |||||||||||||||||||||||||| |||||||    
T  1129 atgtcgtttttgtttttggttctgatttgtggtg 1162  T

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Target: scaffold0070 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 26299 - 26266
Alignment:
Q  287 atgtcgtttttgtttttggttctgatctgtggtg 320  Q
    |||||||||||||||||||||||||| |||||||    
T  26299 atgtcgtttttgtttttggttctgatttgtggtg 26266  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 4298799 - 4298832
Alignment:
Q  287 atgtcgtttttgtttttggttctgatctgtggtg 320  Q
    |||||||||||||||||||||||||| |||||||    
T  4298799 atgtcgtttttgtttttggttctgatttgtggtg 4298832  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 41589747 - 41589715
Alignment:
Q  288 tgtcgtttttgtttttggttctgatctgtggtg 320  Q
    ||||||||||||||||||||||||| |||||||    
T  41589747 tgtcgtttttgtttttggttctgatttgtggtg 41589715  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 43724630 - 43724663
Alignment:
Q  287 atgtcgtttttgtttttggttctgatctgtggtg 320  Q
    |||||||||||||||||||||||||| |||||||    
T  43724630 atgtcgtttttgtttttggttctgatttgtggtg 43724663  T

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