View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_59 (Length: 315)

Name: NF1250_low_59
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_59
NF1250_low_59
[»] chr5 (10 HSPs)
chr5 (11-287)||(38986873-38987150)
chr5 (160-285)||(39725745-39725870)
chr5 (146-287)||(39879125-39879272)
chr5 (146-287)||(40411830-40411977)
chr5 (146-272)||(1164350-1164476)
chr5 (180-284)||(3298832-3298936)
chr5 (179-272)||(1849323-1849416)
chr5 (180-281)||(3391725-3391826)
chr5 (203-266)||(39168281-39168340)
chr5 (57-110)||(39874044-39874097)
[»] chr4 (1 HSPs)
chr4 (161-273)||(25912944-25913058)
[»] chr3 (1 HSPs)
chr3 (156-200)||(55345733-55345777)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 38986873 - 38987150
Alignment:
Q  11 cataggagtggaaaagtaaatctcaaaaaataaataaagagtatgatgggccaaacccgcaattagaaccgaaaattttggccctaaaccataaataaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||||    
T  38986873 cataggagtggaaaagtaaatctcaaaaaataaataaagagtaagatgggccaaacccgcgattagaactgagaattttggccctaaaccataaataaat 38986972  T
Q  111 aaatagatagaataaaaagtgagtt-cggcaattgctgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtg 209  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38986973 aaatagatagaataaaaagtgagtttcggcaattgctgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtg 38987072  T
Q  210 aaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgaccaatcttggt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987073 aaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgaccaatcttggt 38987150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 39725745 - 39725870
Alignment:
Q  160 aattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttgga 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39725745 aattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttgga 39725844  T
Q  260 gcagatcagcgttatgaccaatcttg 285  Q
    ||||||||||||||||||||||||||    
T  39725845 gcagatcagcgttatgaccaatcttg 39725870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 146 - 287
Target Start/End: Original strand, 39879125 - 39879272
Alignment:
Q  146 tgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtgg---cgttctgttgt---gaaagttcgtcaacaacatgtttctcaactt 239  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||   |||||||||||   ||| ||||||||||||||||||| ||| ||     
T  39879125 tgcaattgcaaagaaattaggtcaaagagtggagaagatggaggaagggtggtggcgttctgttgttgtgaatgttcgtcaacaacatgtttgtcagctg 39879224  T
Q  240 cgtactgtctttcatttggagcagatcagcgttatgaccaatcttggt 287  Q
    |||||| |||||||||||||||||||||||||| ||| |||| |||||    
T  39879225 cgtactttctttcatttggagcagatcagcgttttgaacaattttggt 39879272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 146 - 287
Target Start/End: Original strand, 40411830 - 40411977
Alignment:
Q  146 tgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtgg---cgttctgttgt---gaaagttcgtcaacaacatgtttctcaactt 239  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||   |||||||||||   ||| ||||||||||||||||||| ||| ||     
T  40411830 tgcaattgcaaagaaattaggtcaaagagtggagaagatggaggaagggtggtggcgttctgttgttgtgaatgttcgtcaacaacatgtttgtcagctg 40411929  T
Q  240 cgtactgtctttcatttggagcagatcagcgttatgaccaatcttggt 287  Q
    |||||| |||||||||||||||||||||||||| ||| |||| |||||    
T  40411930 cgtactttctttcatttggagcagatcagcgttttgaacaattttggt 40411977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 1164476 - 1164350
Alignment:
Q  146 tgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtact 245  Q
    |||||||| ||| ||||||||||| ||||||  |||||||||| |||| |||||| |||||||||| ||||||||||||||||||||| |||| ||||||    
T  1164476 tgcaattggaaaaaaattaggtcagaaagtgtcgaagatggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtact 1164377  T
Q  246 gtctttcatttggagcagatcagcgtt 272  Q
     | ||||||||||||||| ||||||||    
T  1164376 ttgtttcatttggagcaggtcagcgtt 1164350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 3298832 - 3298936
Alignment:
Q  180 aagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgacca 279  Q
    ||||||||| ||||||||  |  |||| |||| ||||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||||  |||||    
T  3298832 aagatggaggaagggtgggttggtgttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggacca 3298931  T
Q  280 atctt 284  Q
    |||||    
T  3298932 atctt 3298936  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 1849323 - 1849416
Alignment:
Q  179 gaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgtt 272  Q
    |||||||||| ||||||   || |||||||||| ||||||||||||||||||||| |||| |||||| | ||||||||||||||| ||||||||    
T  1849323 gaagatggaggaagggttttgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtt 1849416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 3391725 - 3391826
Alignment:
Q  180 aagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgacca 279  Q
    ||||||||| ||||||||  |  |||| |||| ||||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||||  |||||    
T  3391725 aagatggaggaagggtgggttggtgttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggacca 3391824  T
Q  280 at 281  Q
    ||    
T  3391825 at 3391826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 39168281 - 39168340
Alignment:
Q  203 tgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatc 266  Q
    ||||||||| ||||||||||||||||||||||| |    |||| ||||||||||||||||||||    
T  39168281 tgttgtgaaggttcgtcaacaacatgtttctcatc----tactttctttcatttggagcagatc 39168340  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 39874044 - 39874097
Alignment:
Q  57 tgggccaaacccgcaattagaaccgaaaattttggccctaaaccataaataaat 110  Q
    |||||||||||||| |||||||| ||||||| ||||||||||| | ||||||||    
T  39874044 tgggccaaacccgcgattagaactgaaaattctggccctaaacaacaaataaat 39874097  T

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Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 161 - 273
Target Start/End: Complemental strand, 25913058 - 25912944
Alignment:
Q  161 attaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttc--gtcaacaacatgtttctcaacttcgtactgtctttcatttgg 258  Q
    ||||||||||||| || ||||||||||| |||||||||| ||||||||||| ||||  ||||||||||||||| |||||| |||||| ||||||||||||    
T  25913058 attaggtcaaaaaatgaagaagatggaggaagggtggcgctctgttgtgaatgttctcgtcaacaacatgtttgtcaactgcgtactttctttcatttgg 25912959  T
Q  259 agcagatcagcgtta 273  Q
    |||||||||||||||    
T  25912958 agcagatcagcgtta 25912944  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 55345777 - 55345733
Alignment:
Q  156 aagaaattaggtcaaaaagtggagaagatggagcaagggtggcgt 200  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||    
T  55345777 aagaaattaggtcaaagagtggagaatatggaggaagggtggcgt 55345733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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