View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_6 (Length: 607)

Name: NF1250_low_6
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_6
NF1250_low_6
[»] chr7 (34 HSPs)
chr7 (160-597)||(25955817-25956257)
chr7 (5-88)||(13585625-13585708)
chr7 (56-128)||(25956258-25956331)
chr7 (57-180)||(22703521-22703642)
chr7 (61-170)||(23330794-23330901)
chr7 (57-180)||(2103090-2103211)
chr7 (57-180)||(2751306-2751427)
chr7 (57-180)||(7175907-7176028)
chr7 (57-180)||(22119923-22120044)
chr7 (57-180)||(40542955-40543076)
chr7 (57-170)||(28089851-28089965)
chr7 (57-180)||(7275312-7275433)
chr7 (57-180)||(10091223-10091344)
chr7 (57-180)||(11997884-11998005)
chr7 (57-180)||(17196995-17197116)
chr7 (57-180)||(21835186-21835307)
chr7 (57-131)||(28647004-28647079)
chr7 (66-180)||(654750-654861)
chr7 (58-131)||(21574193-21574268)
chr7 (57-115)||(22696355-22696414)
chr7 (43-84)||(21050151-21050192)
chr7 (57-128)||(42814899-42814972)
chr7 (29-89)||(48125180-48125240)
chr7 (57-131)||(12211626-12211701)
chr7 (57-180)||(19421266-19421387)
chr7 (57-180)||(21217878-21217999)
chr7 (57-106)||(22264618-22264668)
chr7 (97-180)||(23092172-23092252)
chr7 (138-180)||(42913558-42913600)
chr7 (36-89)||(8677577-8677630)
chr7 (57-169)||(17212088-17212198)
chr7 (57-170)||(18044142-18044253)
chr7 (114-180)||(23012553-23012615)
chr7 (56-88)||(46279051-46279083)
[»] chr6 (25 HSPs)
chr6 (56-180)||(6383920-6384041)
chr6 (57-180)||(9208283-9208404)
chr6 (57-180)||(17149501-17149622)
chr6 (57-180)||(15360143-15360264)
chr6 (57-180)||(654191-654312)
chr6 (57-180)||(11448902-11449023)
chr6 (77-199)||(1344986-1345106)
chr6 (79-180)||(34147399-34147498)
chr6 (79-180)||(34160015-34160114)
chr6 (57-180)||(9239006-9239127)
chr6 (77-180)||(12390476-12390577)
chr6 (57-180)||(17081099-17081220)
chr6 (57-180)||(33499505-33499627)
chr6 (56-94)||(6691551-6691589)
chr6 (57-94)||(28741970-28742007)
chr6 (57-128)||(10377746-10377818)
chr6 (57-131)||(28672098-28672174)
chr6 (50-89)||(3433607-3433646)
chr6 (100-199)||(9690664-9690760)
chr6 (57-125)||(8479343-8479412)
chr6 (57-170)||(9843969-9844080)
chr6 (77-131)||(3222725-3222781)
chr6 (57-131)||(12591668-12591744)
chr6 (57-89)||(13564959-13564991)
chr6 (114-180)||(21982365-21982427)
[»] chr5 (31 HSPs)
chr5 (60-225)||(31206276-31206440)
chr5 (57-180)||(19145457-19145577)
chr5 (56-180)||(15485336-15485458)
chr5 (57-205)||(32059460-32059606)
chr5 (57-172)||(12398501-12398614)
chr5 (57-180)||(27498776-27498897)
chr5 (57-180)||(36954849-36954970)
chr5 (57-180)||(15641150-15641271)
chr5 (57-180)||(34310173-34310294)
chr5 (29-94)||(16172984-16173049)
chr5 (57-169)||(38684239-38684348)
chr5 (57-180)||(8484706-8484827)
chr5 (57-126)||(8780509-8780579)
chr5 (138-180)||(9659356-9659398)
chr5 (57-180)||(19456256-19456375)
chr5 (57-180)||(33709548-33709667)
chr5 (79-131)||(15931112-15931165)
chr5 (57-180)||(30485859-30485980)
chr5 (57-128)||(36895456-36895528)
chr5 (50-89)||(14656649-14656688)
chr5 (57-180)||(18207238-18207359)
chr5 (117-181)||(10076810-10076871)
chr5 (57-170)||(11926556-11926668)
chr5 (57-162)||(25586963-25587066)
chr5 (29-94)||(31669025-31669090)
chr5 (56-89)||(32340342-32340375)
chr5 (28-84)||(18351784-18351840)
chr5 (30-94)||(19373250-19373314)
chr5 (61-89)||(19883179-19883207)
chr5 (139-199)||(35425124-35425184)
chr5 (57-131)||(37495078-37495154)
[»] chr3 (40 HSPs)
chr3 (58-180)||(40133494-40133614)
chr3 (57-129)||(26158849-26158922)
chr3 (36-205)||(34844388-34844554)
chr3 (77-180)||(8456195-8456296)
chr3 (57-180)||(21362974-21363095)
chr3 (57-180)||(26108323-26108444)
chr3 (57-180)||(35492942-35493063)
chr3 (57-170)||(30257655-30257766)
chr3 (57-180)||(25289759-25289880)
chr3 (57-170)||(49167087-49167201)
chr3 (57-199)||(46576379-46576519)
chr3 (29-89)||(42799753-42799813)
chr3 (57-205)||(48977419-48977565)
chr3 (57-180)||(10190787-10190908)
chr3 (57-180)||(15566545-15566665)
chr3 (77-180)||(18176932-18177033)
chr3 (57-180)||(26174144-26174265)
chr3 (57-180)||(45272461-45272582)
chr3 (57-180)||(45529799-45529920)
chr3 (16-94)||(18316499-18316577)
chr3 (57-170)||(30807207-30807319)
chr3 (36-94)||(53863868-53863926)
chr3 (57-170)||(40940856-40940967)
chr3 (114-180)||(51532879-51532941)
chr3 (57-131)||(52821725-52821801)
chr3 (57-180)||(10083864-10083985)
chr3 (133-180)||(10538171-10538218)
chr3 (56-114)||(15034382-15034441)
chr3 (57-180)||(34492620-34492741)
chr3 (77-180)||(49258307-49258408)
chr3 (57-180)||(53233955-53234076)
chr3 (56-94)||(35623267-35623305)
chr3 (58-88)||(40777052-40777082)
chr3 (29-70)||(1712834-1712875)
chr3 (114-180)||(8097324-8097386)
chr3 (50-180)||(10682860-10682988)
chr3 (57-94)||(36660801-36660838)
chr3 (57-170)||(39041907-39042018)
chr3 (57-169)||(53424233-53424342)
chr3 (57-128)||(4252490-4252562)
[»] chr1 (39 HSPs)
chr1 (29-180)||(37046995-37047144)
chr1 (57-180)||(19480565-19480688)
chr1 (60-180)||(30677210-30677328)
chr1 (57-180)||(24674424-24674545)
chr1 (61-180)||(32729580-32729696)
chr1 (57-180)||(4621282-4621403)
chr1 (57-225)||(39714650-39714816)
chr1 (57-180)||(46607841-46607962)
chr1 (30-94)||(6127987-6128051)
chr1 (57-128)||(24217009-24217081)
chr1 (56-115)||(39964542-39964602)
chr1 (57-180)||(7766772-7766893)
chr1 (57-180)||(8077678-8077799)
chr1 (77-170)||(23232316-23232411)
chr1 (77-180)||(24122074-24122175)
chr1 (57-131)||(25237080-25237155)
chr1 (57-170)||(17935800-17935911)
chr1 (56-171)||(47360439-47360552)
chr1 (57-170)||(15059457-15059568)
chr1 (29-94)||(15581142-15581207)
chr1 (57-128)||(45859136-45859209)
chr1 (57-180)||(33905555-33905676)
chr1 (29-97)||(41470608-41470676)
chr1 (57-131)||(1138610-1138685)
chr1 (65-131)||(1486457-1486524)
chr1 (61-131)||(20907352-20907423)
chr1 (37-88)||(30043603-30043654)
chr1 (56-107)||(44417449-44417500)
chr1 (30-88)||(34228885-34228943)
chr1 (138-199)||(34778449-34778510)
chr1 (56-131)||(49101731-49101807)
chr1 (57-128)||(809253-809325)
chr1 (29-88)||(4824981-4825041)
chr1 (47-95)||(13857842-13857890)
chr1 (62-94)||(18928375-18928407)
chr1 (141-180)||(36921556-36921596)
chr1 (56-88)||(38939239-38939271)
chr1 (56-115)||(39012328-39012388)
chr1 (56-84)||(44486168-44486196)
[»] scaffold0623 (1 HSPs)
scaffold0623 (57-180)||(1101-1222)
[»] scaffold0366 (2 HSPs)
scaffold0366 (57-180)||(9344-9465)
scaffold0366 (57-180)||(12046-12166)
[»] chr8 (27 HSPs)
chr8 (57-180)||(3734668-3734789)
chr8 (57-131)||(34639298-34639372)
chr8 (57-180)||(39349291-39349412)
chr8 (57-180)||(4718680-4718801)
chr8 (57-169)||(34237711-34237821)
chr8 (77-170)||(15259461-15259552)
chr8 (61-180)||(20305947-20306064)
chr8 (61-180)||(21092580-21092697)
chr8 (47-170)||(28964058-28964179)
chr8 (56-115)||(40136942-40137001)
chr8 (71-168)||(6953064-6953159)
chr8 (57-170)||(26168904-26169014)
chr8 (57-131)||(27746425-27746501)
chr8 (57-128)||(41070796-41070868)
chr8 (29-115)||(6530817-6530904)
chr8 (77-180)||(21603285-21603386)
chr8 (57-180)||(28193509-28193630)
chr8 (57-115)||(15974940-15974998)
chr8 (57-180)||(18128548-18128669)
chr8 (58-170)||(28908857-28908969)
chr8 (67-128)||(36094729-36094791)
chr8 (56-89)||(22779692-22779725)
chr8 (29-89)||(26688875-26688936)
chr8 (28-80)||(7507419-7507471)
chr8 (80-180)||(8765571-8765669)
chr8 (56-96)||(9126582-9126622)
chr8 (57-131)||(14632989-14633065)
[»] chr2 (29 HSPs)
chr2 (57-131)||(8192442-8192517)
chr2 (57-180)||(5394048-5394169)
chr2 (56-180)||(26176243-26176364)
chr2 (57-166)||(4618744-4618851)
chr2 (57-180)||(17324797-17324917)
chr2 (77-199)||(33827599-33827719)
chr2 (57-169)||(27290619-27290729)
chr2 (56-180)||(35171830-35171952)
chr2 (76-180)||(36390613-36390715)
chr2 (57-180)||(11941255-11941376)
chr2 (57-180)||(15037990-15038111)
chr2 (57-131)||(28194224-28194299)
chr2 (57-180)||(41314023-41314143)
chr2 (56-94)||(6099519-6099557)
chr2 (58-180)||(30466875-30466995)
chr2 (77-180)||(2140531-2140629)
chr2 (29-89)||(41908643-41908704)
chr2 (57-131)||(10582080-10582156)
chr2 (29-97)||(43963986-43964054)
chr2 (57-96)||(19605972-19606011)
chr2 (76-170)||(23787063-23787155)
chr2 (57-131)||(40591214-40591289)
chr2 (143-225)||(7250339-7250420)
chr2 (57-180)||(18708508-18708629)
chr2 (60-94)||(26482134-26482168)
chr2 (138-172)||(31778141-31778175)
chr2 (47-107)||(29503299-29503360)
chr2 (77-180)||(44976198-44976300)
chr2 (57-180)||(19054056-19054178)
[»] chr4 (40 HSPs)
chr4 (57-199)||(33696305-33696445)
chr4 (57-162)||(7392027-7392129)
chr4 (57-180)||(32986228-32986349)
chr4 (57-180)||(40058897-40059018)
chr4 (78-180)||(5609247-5609347)
chr4 (29-94)||(37980148-37980213)
chr4 (57-180)||(25852245-25852367)
chr4 (57-180)||(34844803-34844924)
chr4 (57-180)||(52983650-52983771)
chr4 (57-180)||(54127387-54127508)
chr4 (57-171)||(13771536-13771649)
chr4 (57-170)||(27528850-27528961)
chr4 (58-107)||(37455609-37455658)
chr4 (57-180)||(20078029-20078150)
chr4 (56-102)||(56409988-56410035)
chr4 (56-102)||(27908541-27908587)
chr4 (29-94)||(21344827-21344892)
chr4 (56-154)||(28929709-28929805)
chr4 (56-88)||(38206132-38206164)
chr4 (64-115)||(38740888-38740940)
chr4 (57-96)||(13017760-13017799)
chr4 (50-88)||(4686134-4686172)
chr4 (50-88)||(25414221-25414259)
chr4 (63-115)||(3392772-3392825)
chr4 (57-170)||(12500113-12500224)
chr4 (57-130)||(25969592-25969668)
chr4 (29-94)||(29195105-29195170)
chr4 (56-89)||(31141349-31141382)
chr4 (79-180)||(32990488-32990587)
chr4 (57-170)||(35674796-35674907)
chr4 (56-89)||(37492723-37492756)
chr4 (58-127)||(40307574-40307642)
chr4 (57-180)||(46714423-46714545)
chr4 (56-84)||(5998698-5998726)
chr4 (57-131)||(13873385-13873461)
chr4 (57-89)||(19220564-19220596)
chr4 (56-88)||(25434665-25434697)
chr4 (58-128)||(28791146-28791218)
chr4 (56-88)||(42281240-42281272)
chr4 (114-180)||(45787749-45787811)
[»] scaffold0576 (1 HSPs)
scaffold0576 (57-180)||(5127-5248)
[»] scaffold0026 (1 HSPs)
scaffold0026 (57-180)||(97411-97532)
[»] scaffold0019 (1 HSPs)
scaffold0019 (57-180)||(161840-161961)
[»] scaffold0160 (1 HSPs)
scaffold0160 (57-180)||(29188-29308)
[»] scaffold0070 (1 HSPs)
scaffold0070 (57-180)||(40356-40477)
[»] scaffold0328 (1 HSPs)
scaffold0328 (57-170)||(15022-15133)
[»] scaffold0459 (1 HSPs)
scaffold0459 (57-180)||(10739-10859)
[»] scaffold0217 (1 HSPs)
scaffold0217 (57-180)||(7354-7475)
[»] scaffold0189 (1 HSPs)
scaffold0189 (56-94)||(17724-17762)
[»] scaffold1175 (1 HSPs)
scaffold1175 (114-205)||(2446-2533)
[»] scaffold0157 (1 HSPs)
scaffold0157 (57-170)||(20253-20364)
[»] scaffold0012 (1 HSPs)
scaffold0012 (19-84)||(240896-240961)


Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 160 - 597
Target Start/End: Complemental strand, 25956257 - 25955817
Alignment:
Q  160 cccgcaagtggacagtgggatcagccctcttggattagtctgtcctgcggctagataccgagttttnnnnnnnttaacaaggtaaatttttc---catga 256  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||   |||||    
T  25956257 cccgcaagtggacagtgggatcagccttcttggattagtctgtcctgcggctagataccgagttttaaaaaaaataacaaggtaaatttttctaacatga 25956158  T
Q  257 taaacttgtctatagataaaattattgttatttctagccaggtaactttccccacctgtaatgttctgttcttggtcgaaacatgcttaactaaacttct 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25956157 taaacttgtctatagataaaattattgttatttctagccaggtaactttccacacctgtaatgttctgttcttggtcgaaacatgcttaactaaacttct 25956058  T
Q  357 tcattccctgtataggtatgcattaggtggctttgatggagtcacaatggttccaagtgttgaagtattcgatcctcgtcttggaaaatggacggtggag 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25956057 tcattccctgtataggtatgcattaggtggctttgatggagtcacaatggttccaagtgttgaagtattcgatcctcgtcttggaaaatggacggtggag 25955958  T
Q  457 gaaacaacaatgaatcatcctagggggtattttgctgctgcagttgtcaaagattctatctatgtgattggtggtgttaatggtgatgaaaatattgtag 556  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25955957 gaaacaacaatgaatcatcctagggggtattttgctgctgcagtcgtcaaagattctatctatgtgattggtggtgttaatggtgatgaaaatattgtag 25955858  T
Q  557 atactgtaagtaaatctattgaccttagtcttttgcctttg 597  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25955857 atactgtaagtaaatctattgaccttagtcttttgcctttg 25955817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 13585625 - 13585708
Alignment:
Q  5 aaacttcttagtcatacccacgatggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggtt 88  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  13585625 aaacttattagtcatacccacgtgggttggtctggtgatgtaggtttgagaccttggagtttgctcctctcaaggtcgcaggtt 13585708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 25956331 - 25956258
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattc-ccctggtgtcaatgtcggtggctaagtccataca 128  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||    
T  25956331 ccttggagtgtgctcctctcaaggtcttaggttcaattctccctggtgtcaatgtcggtggctaagtccataca 25956258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 22703521 - 22703642
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| ||||||||||| ||||| |||||||||||||||    |||| ||||||||||||||| |    
T  22703521 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgtcaatttcggtgggctaagtccataca---aagct-tgctctggctttaaacg 22703616  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    |||||||||||||||| | |||||||    
T  22703617 ggacccccgcaagtgggcggtgggat 22703642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 23330901 - 23330794
Alignment:
Q  61 gagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgggacc 159  Q
    ||||||||||||||||||||||||||||| | |||| | |||| |||| |||||||  |||||||||||   ||||| ||||||||||| ||| ||||||    
T  23330901 gagtgtgctcctctcaaggtctcaggttcgactccctccggtgccaatttcggtgggcaagtccataca---gagctttgctctggcttaaaacgggacc 23330805  T
Q  160 cccgcaagtgg 170  Q
     ||||||||||    
T  23330804 tccgcaagtgg 23330794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 2103090 - 2103211
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||| | |||| ||||||| ||||||||||||||||   || |||||||||||||||||    
T  2103090 cttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaatg 2103185  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  2103186 gggcccccgcaagtgggcggtgggat 2103211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 2751306 - 2751427
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  2751306 cttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 2751401  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||| ||| | |||||||    
T  2751402 gggcccccgcaaatgggcggtgggat 2751427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 7176028 - 7175907
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || |||||||||||||||      
T  7176028 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaaca 7175933  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    |||||||||||||||| | |||||||    
T  7175932 ggacccccgcaagtgggcggtgggat 7175907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 22119923 - 22120044
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  22119923 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 22120018  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  22120019 gggcccccgcaagtgggcggtgggat 22120044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 40543076 - 40542955
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  40543076 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 40542981  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  40542980 gggcccccgcaagtgggcggtgggat 40542955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 28089851 - 28089965
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagag-gagctatgctctggctttaaat 153  Q
    |||||||| ||||||||   | ||||||||||| || ||| ||||||||||| ||||||| ||||||||||||| || ||||| ||||||||||||||||    
T  28089851 cttggagtttgctcctccagatgtctcaggttcgataccctctggtgtcaatttcggtgggctaagtccatacaaagtgagct-tgctctggctttaaat 28089949  T
Q  154 gggacccccgcaagtgg 170  Q
    ||| |||||||||||||    
T  28089950 ggg-cccccgcaagtgg 28089965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 7275312 - 7275433
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || |||||||||||||||      
T  7275312 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaaca 7275407  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  7275408 gggcccccgcaagtgggcggtgggat 7275433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 10091223 - 10091344
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||| | |||| ||||||| ||||||||||||||||   || |||||||||||||||||    
T  10091223 cttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaatg 10091318  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    ||  |||||||||||| | |||||||    
T  10091319 gggtccccgcaagtgggcggtgggat 10091344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 11997884 - 11998005
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcgg-tggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| |||||||||  ||||||||||||| |||||| |||||| |||| |||| ||||||||||||||||    |||| |||||||||||||||      
T  11997884 cttggagtttgctcctctagaggtctcaggttcgattccctctggtgccaatttcggttggctaagtccataca---tagct-tgctctggctttaaact 11997979  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  11997980 gggcccccgcaagtgggcggtgggat 11998005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 17197116 - 17196995
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtg-gctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   |||||||| |||| |||||| |||||| |||| |||||| |||||||||||||||||   || ||||||||||||||| |    
T  17197116 cttggagtttgctcctccataggtctcaagttcgattccctctggtgccaatttcggtgagctaagtccatacagag---ct-tgctctggctttaaacg 17197021  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  17197020 gggcccccgcaagtgggcggtgggat 17196995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 21835186 - 21835307
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   || |||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  21835186 cttggagtttgctcctccagagatctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 21835281  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  21835282 gggcccccgcaagtgggcggtgggat 21835307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 28647004 - 28647079
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagag 131  Q
    ||||||||||||| ||||||||||||||||||| |||||| |||||| |||| |||||||  ||||| ||||||||    
T  28647004 cttggagtgtgcttctctcaaggtctcaggttcgattccctctggtgccaatttcggtgggcaagtcaatacagag 28647079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 654861 - 654750
Alignment:
Q  66 tgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatgggacccccg 163  Q
    ||||||||  |||||||||||||| |||||| |||||| |||| ||||| |||||||||||||||   ||||| ||||||||||||||| ||| ||||||    
T  654861 tgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca---gagct-tgctctggctttaaacggg-cccccg 654767  T
Q  164 caagtggacagtgggat 180  Q
    ||||||| | |||||||    
T  654766 caagtgggcggtgggat 654750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 21574268 - 21574193
Alignment:
Q  58 ttggagtgtgctcctctcaaggtctcaggttccattcccc--tggtgtcaatgtcggtggctaagtccatacagag 131  Q
    |||||||||||||||||||||||| ||||||| |||||||  ||||| |||  |||||||  ||||||||||||||    
T  21574268 ttggagtgtgctcctctcaaggtcacaggttcgattcccctttggtgccaacttcggtgggcaagtccatacagag 21574193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 22696355 - 22696414
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg 115  Q
    ||||||||||||||||||||||||||||||||  |||||| |||||| |||| |||||||    
T  22696355 cttggagtgtgctcctctcaaggtctcaggtttgattccctctggtgccaatttcggtgg 22696414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 21050192 - 21050151
Alignment:
Q  43 tgtaggtttgaggccttggagtgtgctcctctcaaggtctca 84  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  21050192 tgtaggcttgagaccttggagtgtgctcctctcaaggtctca 21050151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 42814899 - 42814972
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccataca 128  Q
    |||||||| |||||||||  | ||||||||||| |||||| ||||||||||| ||||| |||||||||||||||    
T  42814899 cttggagtttgctcctcttgaagtctcaggttcgattccctctggtgtcaatttcggtgggctaagtccataca 42814972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 48125240 - 48125180
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttc 89  Q
    ||||||||||||| ||| || ||| | ||||||||||||||||||  ||||||||||||||    
T  48125240 ggttggtctggtggtgttggcttgggaccttggagtgtgctcctccgaaggtctcaggttc 48125180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 12211701 - 12211626
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttcca-ttcccctggtgtcaatgtcggtggctaagtccatacagag 131  Q
    |||||||||||||||||||||| |||||||||  | |||| |||||| |||| ||| |||  ||||||||||||||    
T  12211701 cttggagtgtgctcctctcaagatctcaggtttgatttcctctggtgccaatttcgatggacaagtccatacagag 12211626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 19421266 - 19421387
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| |||||||||  ||||||||||||| ||| |  ||||||||||| ||| ||| ||||||||||||||||   || ||||||| |||||||||    
T  19421266 cttggagtttgctcctctagaggtctcaggttcgatttcttctggtgtcaatttcgatgggctaagtccatacagag---ct-tgctctgactttaaatg 19421361  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || | ||| ||||||| | |||||||    
T  19421362 gggcgcccacaagtgggcggtgggat 19421387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 21217999 - 21217878
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| ||| || |||| ||||| |||||||||||||||   ||||| |||||| |||||||| |    
T  21217999 cttggagtttgctcctccagaggtctcaggttcgattccctctgatgccaatttcggtgggctaagtccataca---gagct-tgctctagctttaaacg 21217904  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||| ||||||| | |||||||    
T  21217903 ggccccccacaagtgggcggtgggat 21217878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 22264668 - 22264618
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaa 106  Q
    |||||||| |||||||||||||||||||| ||| |||||| ||||||||||    
T  22264668 cttggagtttgctcctctcaaggtctcagattcgattccctctggtgtcaa 22264618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 23092172 - 23092252
Alignment:
Q  97 ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtgggat 180  Q
    |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| ||| ||||||||| ||||| |||||||    
T  23092172 ctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacggggcccccgcaaatggacggtgggat 23092252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 42913600 - 42913558
Alignment:
Q  138 tgctctggctttaaatgggacccccgcaagtggacagtgggat 180  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||    
T  42913600 tgctctggctttaaacggggcccccgcaagtggacggtgggat 42913558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 8677630 - 8677577
Alignment:
Q  36 ctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttc 89  Q
    |||||| |||||| ||||| ||| |||| ||||||||||| |||||||||||||    
T  8677630 ctggtggtgtaggcttgagacctaggagggtgctcctctctaggtctcaggttc 8677577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 17212088 - 17212198
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattc-ccctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||| | |||||| |||| ||||| ||||||||||||||||||      ||||||||||| ||| |    
T  17212088 cttggagtttgctcctccagaggtctcaggttcaattctctctggtgccaatttcggtgggctaagtccatacagag----attgctctggcttaaaacg 17212183  T
Q  155 ggacccccgcaagtg 169  Q
    ||||||| |||||||    
T  17212184 ggacccctgcaagtg 17212198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 18044142 - 18044253
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||| ||||||| |||||| || ||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  18044142 cttggagtttgctcctccagaggtcccaggttcgattccctcttgtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 18044237  T
Q  155 ggacccccgcaagtgg 170  Q
    || ||||| |||||||    
T  18044238 gggcccccacaagtgg 18044253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 23012615 - 23012553
Alignment:
Q  114 ggctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtgggat 180  Q
    ||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||| | |||||||    
T  23012615 ggctaagtccatacagag---ct-tgctctggctttaaatggggcccccacaagtgggcggtgggat 23012553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 46279051 - 46279083
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggtt 88  Q
    |||||||||||||||||||||||||||| ||||    
T  46279051 ccttggagtgtgctcctctcaaggtctccggtt 46279083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 6384041 - 6383920
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattcccctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    |||||||||||||||||||||||||||||||||| || || | |||| |||| || ||||   ||||||||   | ||||| |||| |||||||||||||    
T  6384041 ccttggagtgtgctcctctcaaggtctcaggttcaatccctcgggtgccaatttcagtgggctagtccata---aagagctttgctttggctttaaatgg 6383945  T
Q  156 gacccccgcaagtggacagtgggat 180  Q
    ||||||| |||||||||||||||||    
T  6383944 gacccccacaagtggacagtgggat 6383920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 9208283 - 9208404
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccc-tggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    |||||||| |||||||||||||||||||||||| ||||||| ||||| |||| |||||||  ||||||||||||||   |  |||| |||||||||||||    
T  9208283 cttggagtttgctcctctcaaggtctcaggttcgattccccctggtgccaatttcggtgggcaagtccatacagag---ccttgctttggctttaaatgg 9208379  T
Q  156 gacccccgcaagtggacagtgggat 180  Q
    | ||||||||||||| | |||||||    
T  9208380 ggcccccgcaagtgggcggtgggat 9208404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 17149622 - 17149501
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||  ||| ||||| |  ||||||||||||||   |  |||| |||||||||||||    
T  17149622 cttggagtgtgctcctctcaaggtctcaggttcgattccctctggtgctaatttcggttggcaagtccatacagag---ccttgctttggctttaaatgg 17149526  T
Q  156 gacccccgcaagtggacagtgggat 180  Q
    | |||||||||||| || |||||||    
T  17149525 ggcccccgcaagtgaacggtgggat 17149501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 15360264 - 15360143
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  15360264 cttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 15360169  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||| ||| | |||||||    
T  15360168 gggcccccgcaaatgggcggtgggat 15360143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 654312 - 654191
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  654312 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 654217  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || | ||||||||||| | |||||||    
T  654216 gggctcccgcaagtgggcggtgggat 654191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 11448902 - 11449023
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||| | |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  11448902 cttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 11448997  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  11448998 gggcccccgcaagtgggcggtgggat 11449023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 77 - 199
Target Start/End: Original strand, 1344986 - 1345106
Alignment:
Q  77 aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacag 174  Q
    ||||||||||||| |||||| |||||| |||| || |||| ||||||||||||| ||   || ||||||||||||||| ||| ||||||||||||||| |    
T  1344986 aggtctcaggttcgattccctctggtgccaatttcagtgggctaagtccatacaaag---ct-tgctctggctttaaacgggccccccgcaagtggacgg 1345081  T
Q  175 tgggatcagccctcttggattagtc 199  Q
    ||||||  | || ||||||||||||    
T  1345082 tgggattggtccccttggattagtc 1345106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 34147399 - 34147498
Alignment:
Q  79 gtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtg 176  Q
    ||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| ||| ||||||||||||| | |||    
T  34147399 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacgggccccccgcaagtgggcggtg 34147494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 34160015 - 34160114
Alignment:
Q  79 gtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtg 176  Q
    ||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| ||| ||||||||||||| | |||    
T  34160015 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacgggccccccgcaagtgggcggtg 34160110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 9239006 - 9239127
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggct-aagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| | ||||||||| ||||   || |||| ||||||||||||    
T  9239006 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggttaagtccatatagag---ct-tgctttggctttaaatg 9239101  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  9239102 gggcccccgcaagtgggcggtgggat 9239127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 12390476 - 12390577
Alignment:
Q  77 aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacag 174  Q
    ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || |||||||||||||||  || ||||||||||||| | |    
T  12390476 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacagggcccccgcaagtgggcgg 12390571  T
Q  175 tgggat 180  Q
    ||||||    
T  12390572 tgggat 12390577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 17081220 - 17081099
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   | |||||| |||  |||||| ||||||||||| ||||||| ||||||||||||||||   || ||||||| |||||||||    
T  17081220 cttggagtttgctcctccagatgtctcaagtttgattccctctggtgtcaatttcggtgggctaagtccatacagag---ct-tgctctgactttaaatg 17081125  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  17081124 gggcccccgcaagtgggcggtgggat 17081099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 33499505 - 33499627
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttc-cattccc-ctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||||||||||||||||||  |||||| ||||||||||| |||||||   ||||||||||    | || |||| ||||||||||||    
T  33499505 cttggagtttgctcctctcaaggtctcaggttcagattccctctggtgtcaatttcggtgggctagtccataca---aatctttgctttggctttaaatg 33499601  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || || || ||||||| | |||||||    
T  33499602 ggccctccacaagtgggcggtgggat 33499627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 6691589 - 6691551
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  6691589 ccttggagtgtgctcctctcaaggtctcaggttcgattc 6691551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 28742007 - 28741970
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  28742007 cttggagtgtgctcctctcaaggtctcaggttcgattc 28741970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 10377746 - 10377818
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccataca 128  Q
    |||||||||||||| | |||||||||||||||| ||||||  ||||| |||| |||||||  |||||||||||    
T  10377746 cttggagtgtgctcatgtcaaggtctcaggttcaattccctatggtgccaatttcggtgggcaagtccataca 10377818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 28672098 - 28672174
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagag 131  Q
    |||||||| |||||||||  |||||| |||||| |||||| ||||||||||| | ||||| ||||||||||||||||    
T  28672098 cttggagtttgctcctctagaggtcttaggttcgattccctctggtgtcaattttggtgggctaagtccatacagag 28672174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 3433646 - 3433607
Alignment:
Q  50 ttgaggccttggagtgtgctcctctcaaggtctcaggttc 89  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  3433646 ttgagaccttggagtttgctcctctcaaggtctcaggttc 3433607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 9690760 - 9690664
Alignment:
Q  100 gtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtgggatcagccctcttggattagt 198  Q
    |||||||| ||||||| ||||||||||||||||   || ||||||||||||||| ||| ||| | ||||||||| |||||||  | ||||| ||||||||    
T  9690760 gtgtcaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacggggccctcacaagtggacggtgggattggtcctctcggattagt 9690665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 8479343 - 8479412
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttcca-ttcccctggtgtcaatgtcggtggctaagtccat 125  Q
    |||||||||||||||||| ||| | |||||||| | |||| ||||||||||| |||||||  ||||||||    
T  8479343 cttggagtgtgctcctcttaagatttcaggttcgatttcctctggtgtcaatttcggtgggcaagtccat 8479412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 9843969 - 9844080
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttcca-ttcccctggtgtcaatgtcggtggct-aagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| |||||||||  ||||||||||||| | |||| ||||||||||| | ||||| | ||||||||||||||   || || |||||||||||| |    
T  9843969 cttggagtttgctcctctagaggtctcaggttcgacttcctctggtgtcaattttggtgggttaagtccatacagag---ct-tgttctggctttaaacg 9844064  T
Q  155 ggacccccgcaagtgg 170  Q
    || ||||| |||||||    
T  9844065 gggccccctcaagtgg 9844080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 3222781 - 3222725
Alignment:
Q  77 aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagag 131  Q
    ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||    
T  3222781 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag 3222725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 12591668 - 12591744
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagag 131  Q
    |||||||| ||||||||  |||||||||||||| |||||| || ||| |||| || || ||||||||||||||||||    
T  12591668 cttggagtttgctcctccaaaggtctcaggttcgattccctctcgtgccaatttcagtgggctaagtccatacagag 12591744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 13564959 - 13564991
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttc 89  Q
    ||||||||||| |||||||||||||||||||||    
T  13564959 cttggagtgtgttcctctcaaggtctcaggttc 13564991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 21982427 - 21982365
Alignment:
Q  114 ggctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtgggat 180  Q
    ||||||||||||||||||   || ||||||||||||||| ||| ||||||||||||| | |||||||    
T  21982427 ggctaagtccatacagag---ct-tgctctggctttaaacggggcccccgcaagtgggcggtgggat 21982365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 31206276 - 31206440
Alignment:
Q  60 ggagtgtgctcctctcaaggtctcaggttccattcccc-tggtgtcaatgtcggtggc-taagtccatacagaggagctatgctctggctttaaatggga 157  Q
    |||||||||||| ||||||||||||||||  ||||||| ||||| |||| ||  |||| |||||||||||||||   ||||||||| |||||||||||||    
T  31206276 ggagtgtgctccgctcaaggtctcaggttttattccccctggtgccaatttcattggcctaagtccatacagag---ctatgctcttgctttaaatggga 31206372  T
Q  158 cccccgcaagtggacagtgggatcagccctcttggattagtctgtcctgcggctagataccgagtttt 225  Q
    ||||| ||||||||| |||||||  | |  || ||||||||| |||||  |||  |||||||||||||    
T  31206373 cccccacaagtggacggtgggattggactcctcggattagtcggtccttgggccggataccgagtttt 31206440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 19145577 - 19145457
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    |||||||| |||||||||||||||||| ||||| |||||| |||||| |||| |||||||  |||||||||||   ||||| |||||||||||||||| |    
T  19145577 cttggagtatgctcctctcaaggtctccggttcgattccctctggtgccaatttcggtgggcaagtccataca---gagctttgctctggctttaaat-g 19145482  T
Q  156 gacccccgcaagtggacagtgggat 180  Q
    | ||||||||||||| | |||||||    
T  19145481 gtcccccgcaagtgggcggtgggat 19145457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 15485458 - 15485336
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattcccctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||||||||||||||||||||||||||||| |||||||||    |||| ||||| || ||||||||||||    | ||||| ||||||||||||||    
T  15485458 ccttggagtgtgctcctctcaaggtctcaggttcgattcccctgacaccaatttcggtgggttaagtccataca---aaactatgttctggctttaaatg 15485362  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    ||  |||||||||||||  |||||||    
T  15485361 gggtccccgcaagtggatggtgggat 15485336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 32059606 - 32059460
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||| |||||  |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  32059606 cttggagtttgctcctccaaaggtctcaggttcgattccttctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 32059511  T
Q  155 ggacccccgcaagtggacagtgggatcagccctcttggattagtctgtcct 205  Q
    || ||||||||||||| | |||||||  | || || ||||||||| |||||    
T  32059510 gggcccccgcaagtgggcggtgggattggtcccctcggattagtcggtcct 32059460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 12398614 - 12398501
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccc-tggtgtcaatgtcggtggc-taagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||| ||||||  |||||||||| |||||||| ||||| |||||||||   || |||||||||||||||||    
T  12398614 cttggagtttgctcctccaaaggtctcaggttcgattccctatggtgtcaatttcggtggcctaagttcatacagag---ct-tgctctggctttaaatg 12398519  T
Q  155 ggacccccgcaagtggac 172  Q
    || ||||||||| |||||    
T  12398518 gggcccccgcaaatggac 12398501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 27498897 - 27498776
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| |||||||||  ||||||||||||| |||||| |||||| |||| ||||| |||||||||||||||    |||| ||||||||||||||| |    
T  27498897 cttggagtttgctcctctagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca---tagct-tgctctggctttaaacg 27498802  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  27498801 gggcccccgcaagtgggcggtgggat 27498776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 36954849 - 36954970
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtg-gctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| |||||||||  ||||||||||||| |||||| |||||   ||| |||| | |||||||||||||||||    | |||| ||||||||||||    
T  36954849 cttggagtttgctcctctagaggtctcaggttcgattccctctggttctaatttcggcgtgctaagtccatacagag----tttgctttggctttaaatg 36954944  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||||| |||||||    
T  36954945 ggccccccgcaagtggactgtgggat 36954970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 15641271 - 15641150
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||| | |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  15641271 cttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 15641176  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  15641175 gggcccccgcaagtgggcggtgggat 15641150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 34310173 - 34310294
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| | ||||| ||||||||||||||||   || ||||||||||||||| |    
T  34310173 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaattttggtgggctaagtccatacagag---ct-tgctctggctttaaacg 34310268  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    ||||||||  |||||||| |||||||    
T  34310269 ggacccccataagtggacggtgggat 34310294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 16173049 - 16172984
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||| |||||  ||| || ||||| |||||||||||||||||||||||||||||||||| ||||    
T  16173049 ggttggcctggtagtgttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattc 16172984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 38684239 - 38684348
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||| |||||||||||||||   ||||| ||||||||||||||| |    
T  38684239 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca---gagct-tgctctggctttaaacg 38684334  T
Q  155 ggacccccgcaagtg 169  Q
    || ||||||||||||    
T  38684335 gg-cccccgcaagtg 38684348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 8484827 - 8484706
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||  |||||| |||||| |||| ||||||| |||||| |||||||||   || ||||||||||||||| |    
T  8484827 cttggagtttgctcctccagaggtctcaggtttgattccctctggtgccaatttcggtgggctaagttcatacagag---ct-tgctctggctttaaacg 8484732  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  8484731 gggcccccgcaagtgggcggtgggat 8484706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 8780509 - 8780579
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccatt-cccctggtgtcaatgtcggtggctaagtccata 126  Q
    ||||||||||||||||||||||||||||||||| |||  | || |||||||| ||| ||| ||||||||||    
T  8780509 cttggagtgtgctcctctcaaggtctcaggttcgattgtctcttgtgtcaatttcgatgggtaagtccata 8780579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 9659398 - 9659356
Alignment:
Q  138 tgctctggctttaaatgggacccccgcaagtggacagtgggat 180  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  9659398 tgctctggctttaaatgggccccccgcaagtggacggtgggat 9659356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 19456375 - 19456256
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    |||||||| ||||||||   ||||||||||||| || || |||||| |||| ||||| |||||||||||||||   ||||| ||||||||||||||| ||    
T  19456375 cttggagtttgctcctccagaggtctcaggttcgatccctctggtgccaatttcggtgggctaagtccataca---gagct-tgctctggctttaaacgg 19456280  T
Q  156 gacccccgcaagtggacagtgggat 180  Q
    |  |||||||||||| | |||||||    
T  19456279 g-gccccgcaagtgggcggtgggat 19456256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 33709667 - 33709548
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   |||||||| |||| |||||| |||||| |||| ||||||| ||||||||||||||||       |||||||||||||| |    
T  33709667 cttggagtttgctcctccagaggtctcaagttcgattccctctggtgccaatttcggtgggctaagtccatacagag------agctctggctttaaacg 33709574  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    |||||||| ||||||| | |||||||    
T  33709573 ggacccccacaagtgggcggtgggat 33709548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 15931112 - 15931165
Alignment:
Q  79 gtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagag 131  Q
    ||||||||||| |||||| |||||| |||| |||||||||||||||||||||||    
T  15931112 gtctcaggttcgattccctctggtgccaatttcggtggctaagtccatacagag 15931165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 30485859 - 30485980
Alignment:
Q  57 cttggagtgtgctcctctca-aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaat 153  Q
    |||||||| ||||||| ||| ||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||   || |||||||||||||||     
T  30485859 cttggagtttgctcct-tcagaggtctcaggttcgattcactctggtgtcaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaac 30485953  T
Q  154 gggacccccgcaagtggacagtgggat 180  Q
    |   ||||||||||||| | |||||||    
T  30485954 gatgcccccgcaagtgggcggtgggat 30485980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 36895456 - 36895528
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccataca 128  Q
    |||||||||||||||||||||||| ||| |||| |||||| |||||  |||| |||||||  |||||||||||    
T  36895456 cttggagtgtgctcctctcaaggtttcatgttcgattccctctggtaccaatttcggtggtcaagtccataca 36895528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 14656688 - 14656649
Alignment:
Q  50 ttgaggccttggagtgtgctcctctcaaggtctcaggttc 89  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  14656688 ttgagaccttggagtttgctcctctcaaggtctcaggttc 14656649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 18207238 - 18207359
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| | |||| |||| ||||||| ||||||||||||||||   || || |||||||||||| |    
T  18207238 cttggagtttgctcctccagaggtctcaggttcgattccctccggtgccaatttcggtgggctaagtccatacagag---ct-tgttctggctttaaacg 18207333  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
     | ||||||||||||| | |||||||    
T  18207334 aggcccccgcaagtgggcggtgggat 18207359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 10076871 - 10076810
Alignment:
Q  117 taagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtgggatc 181  Q
    |||||||||||||||   |||||||||  ||||||||||| ||||| ||||||||| ||||||||    
T  10076871 taagtccatacagag---ctatgctctaactttaaatgggtcccccacaagtggacggtgggatc 10076810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 11926668 - 11926556
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaa-t 153  Q
    |||||||| ||||||||   ||||||||||||  |||||| |||||| |||| ||||||| ||||||||||||||||   || |||||||||||||||      
T  11926668 cttggagtttgctcctccagaggtctcaggttagattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 11926573  T
Q  154 gggacccccgcaagtgg 170  Q
    ||| |||||||||||||    
T  11926572 gggccccccgcaagtgg 11926556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 25586963 - 25587066
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| ||| || |||||| |||| ||||||| ||||||||||||||||   || |||||||||||||||      
T  25586963 cttggagtttgctcctccagaggtctcaggttcgatttcctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaaca 25587058  T
Q  155 ggaccccc 162  Q
    ||||||||    
T  25587059 ggaccccc 25587066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 31669090 - 31669025
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||||||| || ||| || ||| | ||||||||| ||||||||||||||||| |||||| ||||    
T  31669090 ggttggtctgatggtgttggcttgggaccttggagtctgctcctctcaaggtcttaggttcgattc 31669025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 32340375 - 32340342
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttc 89  Q
    ||||||||||||||||||||||||||| ||||||    
T  32340375 ccttggagtgtgctcctctcaaggtcttaggttc 32340342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 18351840 - 18351784
Alignment:
Q  28 tggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctca 84  Q
    |||||||||||||| |||||  ||||| ||||| ||||||||  |||||||||||||    
T  18351840 tggttggtctggtggtgtagacttgagaccttgaagtgtgcttgtctcaaggtctca 18351784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 19373250 - 19373314
Alignment:
Q  30 gttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    ||||| |||||| ||| || ||||| |||||||||||||| |||||||||| | |||||| ||||    
T  19373250 gttggcctggtggtgttggcttgagaccttggagtgtgctactctcaaggttttaggttcgattc 19373314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 19883207 - 19883179
Alignment:
Q  61 gagtgtgctcctctcaaggtctcaggttc 89  Q
    |||||||||||||||||||||||||||||    
T  19883207 gagtgtgctcctctcaaggtctcaggttc 19883179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 35425124 - 35425184
Alignment:
Q  139 gctctggctttaaatgggacccccgcaagtggacagtgggatcagccctcttggattagtc 199  Q
    |||||||||||||| ||| ||||||||||||| | |||||||  | ||||| |||||||||    
T  35425124 gctctggctttaaacggggcccccgcaagtgggcggtgggattggtcctctcggattagtc 35425184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 37495078 - 37495154
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagag 131  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| | ||| ||||||||||||||||||    
T  37495078 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaattttggtgggctaagtccatacagag 37495154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 40133614 - 40133494
Alignment:
Q  58 ttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    ||||||| ||||||||  |||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||   || ||||||||||||||| ||    
T  40133614 ttggagtttgctcctccaaaggtctcaggttcgattccctctggtgtcaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacgg 40133519  T
Q  156 gacccccgcaagtggacagtgggat 180  Q
    | ||||||||||||| | |||||||    
T  40133518 ggcccccgcaagtgggcggtgggat 40133494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 26158849 - 26158922
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacag 129  Q
    |||||||||||||||||||||||||||||||| |||||||  ||||| |||| ||||||| |||||||||||||    
T  26158849 cttggagtgtgctcctctcaaggtctcaggtttcattccctttggtgccaatttcggtgggtaagtccatacag 26158922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 34844388 - 34844554
Alignment:
Q  36 ctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagaggag 134  Q
    |||||| ||| || ||||| |||||||||||||||||||||||||||||||||| |||||| |  | | |||| |||||||   ||| ||||||   |||    
T  34844388 ctggtgttgttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattccctccagagccaatttcggtggactagtacataca---gag 34844484  T
Q  135 ctatgctctggctttaaatgggacccccgcaagtggacagtgggatcagccctcttggattagtctgtcct 205  Q
    || |||| |||||||||||||| ||||||||||||||  |||||||  | || || ||||||||| |||||    
T  34844485 ctttgctatggctttaaatggg-cccccgcaagtggatggtgggattggacccctcggattagtcggtcct 34844554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 8456296 - 8456195
Alignment:
Q  77 aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacag 174  Q
    ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| ||| ||||||||||||| |||    
T  8456296 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacggggcccccgcaagtgggcag 8456201  T
Q  175 tgggat 180  Q
    ||||||    
T  8456200 tgggat 8456195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 21362974 - 21363095
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| ||||||||||| ||||| ||||||||||||||||||   || ||||||||||||||| |    
T  21362974 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgtcaatttcggtaggctaagtccatacagag---ct-tgctctggctttaaacg 21363069  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    |  ||||||||||||| | |||||||    
T  21363070 gagcccccgcaagtgggcggtgggat 21363095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 26108323 - 26108444
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  26108323 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 26108418  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  26108419 gggcccccgcaagtgggctgtgggat 26108444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 35492942 - 35493063
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  35492942 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 35493037  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  35493038 gggcccccgcaagtgggcggtgggat 35493063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 30257655 - 30257766
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccct-ggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||| |||||| | |||| |||| ||| ||| ||||||||||||||||   || |||||||||||||||||    
T  30257655 cttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcgatggactaagtccatacagag---ct-tgctctggctttaaatg 30257750  T
Q  155 ggacccccgcaagtgg 170  Q
    || |||||||||||||    
T  30257751 gggcccccgcaagtgg 30257766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 25289880 - 25289759
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| || ||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  25289880 cttggagtttgctcctccagaggtctcaggttcgattccctctagtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 25289785  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  25289784 gggcccccgcaagtgggcggtgggat 25289759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 49167087 - 49167201
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  ||| | |||||||| |||| | ||||||||||| ||||||| ||||||||||||| ||  | | ||||||||||||||| |    
T  49167087 cttggagtttgctcctccaaagatatcaggttcgattctctctggtgtcaatttcggtggactaagtccatacatagc-gttttgctctggctttaaacg 49167185  T
Q  155 ggacccccgcaagtgg 170  Q
    ||||||||||||||||    
T  49167186 ggacccccgcaagtgg 49167201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 57 - 199
Target Start/End: Original strand, 46576379 - 46576519
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| || |||| ||||||||||||||||   || ||||||||||||||| |    
T  46576379 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcagtgggctaagtccatacagag---ct-tgctctggctttaaacg 46576474  T
Q  155 ggacccccgcaagtggacagtgggatcagccctcttggattagtc 199  Q
    || ||||||||||||| | || ||||  | || ||||||||||||    
T  46576475 gggcccccgcaagtgggcggtcggattggtccccttggattagtc 46576519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 42799813 - 42799753
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttc 89  Q
    |||||| |||||| ||| || ||| | ||||||||||||||||||||||||||||||||||    
T  42799813 ggttggcctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttc 42799753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 48977419 - 48977565
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggct-aagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||| |||||  |||||| |||| ||||||| | ||||||||||||||   || ||||||||||||||| |    
T  48977419 cttggagtttgctcctccaaaggtctcaggttcgattccttctggtgccaatttcggtgggttaagtccatacagag---ct-tgctctggctttaaacg 48977514  T
Q  155 ggacccccgcaagtggacagtgggatcagccctcttggattagtctgtcct 205  Q
    || |||| |||||||| | |||||||  | || || ||||||||| |||||    
T  48977515 gggcccctgcaagtgggcggtgggattggtcccctcggattagtcggtcct 48977565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 10190908 - 10190787
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||| ||||||||  |||||| || ||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  10190908 cttggagtttgctcctccagagggctcaggtttgattccctctagtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 10190813  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||||| |||||||    
T  10190812 gggcccccgcaagtggacggtgggat 10190787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 15566665 - 15566545
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| || ||| |||| ||||| |||||||||||||||   ||||| ||||||||||||||| |    
T  15566665 cttggagtttgctcctccagaggtctcaggttcgattccctctagtgccaatttcggtgggctaagtccataca---gagct-tgctctggctttaaacg 15566570  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  15566569 gg-cccccgcaagtgggcggtgggat 15566545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 18177033 - 18176932
Alignment:
Q  77 aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacag 174  Q
    |||| |||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| ||| ||||||||||||| | |    
T  18177033 aggtatcaggttcgattccctctggtgccaatttcggtggactaagtccatacagag---ct-tgctctggctttaaacggggcccccgcaagtgggcgg 18176938  T
Q  175 tgggat 180  Q
    ||||||    
T  18176937 tgggat 18176932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 26174144 - 26174265
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggct-aagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| ||| || |||||| |||| ||||||| | ||||||||||||||   || ||||||||||||||||     
T  26174144 cttggagtttgctcctccagaggtctcaggttcgatttcctctggtgccaatttcggtgggttaagtccatacagag---ct-tgctctggctttaaata 26174239  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  26174240 gggcccccgcaagtgggcggtgggat 26174265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 45272582 - 45272461
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   | ||||||| ||| |||||| |||||| |||| ||||||| ||||||||||||   |||||| ||||||||||||||| |    
T  45272582 cttggagtttgctcctccagatgtctcagtttcgattccctctggtgccaatttcggtgggctaagtccatac---ggagct-tgctctggctttaaacg 45272487  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  45272486 gggcccccgcaagtgggcggtgggat 45272461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 45529920 - 45529799
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||| | |||| ||| ||| ||||||||||||||||   || ||||||||||||||| |    
T  45529920 cttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcgatgggctaagtccatacagag---ct-tgctctggctttaaacg 45529825  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  45529824 ggccccccgcaagtgggcggtgggat 45529799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 18316577 - 18316499
Alignment:
Q  16 tcatacccacgatggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    ||||||||||   ||||||||||||| ||  || ||| | ||||||||||||||||||||||||||| |||||| ||||    
T  18316577 tcatacccacttgggttggtctggtggtgctggcttgggaccttggagtgtgctcctctcaaggtcttaggttcgattc 18316499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 30807319 - 30807207
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaa-t 153  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || |||||||||||||||      
T  30807319 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 30807224  T
Q  154 gggacccccgcaagtgg 170  Q
    ||| |||||||||||||    
T  30807223 gggccccccgcaagtgg 30807207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 53863926 - 53863868
Alignment:
Q  36 ctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||||||| || ||| | ||||||||||||||||||||||||||| |||||| ||||    
T  53863926 ctggtgatgttggcttgggaccttggagtgtgctcctctcaaggtcttaggttcaattc 53863868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 40940856 - 40940967
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| |||||||||||||   ||||| ||||||| ||||||| |    
T  40940856 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtggactaagtccataca---gagct-tgctctgactttaaacg 40940951  T
Q  155 ggacccccgcaagtgg 170  Q
    || ||||| |||||||    
T  40940952 gggcccccacaagtgg 40940967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 51532879 - 51532941
Alignment:
Q  114 ggctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtgggat 180  Q
    ||||||||||||||||||   || ||||||  ||||||||||||||||||||||||||| |||||||    
T  51532879 ggctaagtccatacagag---ct-tgctctaactttaaatgggacccccgcaagtggacggtgggat 51532941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 52821801 - 52821725
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtg-gctaagtccatacagag 131  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| |||||| |||||||||||||||||    
T  52821801 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgagctaagtccatacagag 52821725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 10083985 - 10083864
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||| ||||||||  |||||| || ||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  10083985 cttggagtttgctcctccagagggctcaggtttgattccctctagtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 10083890  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||| ||||||||| |||||||    
T  10083889 gggcccccacaagtggacggtgggat 10083864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 10538218 - 10538171
Alignment:
Q  133 agctatgctctggctttaaatgggacccccgcaagtggacagtgggat 180  Q
    |||| |||||| |||||||||||||||  |||||||||||||||||||    
T  10538218 agctttgctctagctttaaatgggacctacgcaagtggacagtgggat 10538171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 15034382 - 15034441
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattc-ccctggtgtcaatgtcggtg 114  Q
    |||||||| ||| ||||||||||||||||||||| |||| |||||||| |||| ||||||    
T  15034382 ccttggagggtgatcctctcaaggtctcaggttcaattctccctggtgccaatttcggtg 15034441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 34492741 - 34492620
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   |||||||| |||| |||||| ||| || |||| ||| ||| ||||||||||||||||   || ||||||||||||||| |    
T  34492741 cttggagtttgctcctccagaggtctcatgttcgattccctctgctgccaatttcgttgggctaagtccatacagag---ct-tgctctggctttaaacg 34492646  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  34492645 gggcccccgcaagtgggcggtgggat 34492620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 49258408 - 49258307
Alignment:
Q  77 aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacag 174  Q
    ||||||||||||| |||||| || ||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| ||| ||||| ||||||| | |    
T  49258408 aggtctcaggttcgattccctctagtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacggggcccccacaagtgggcgg 49258313  T
Q  175 tgggat 180  Q
    ||||||    
T  49258312 tgggat 49258307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 53234076 - 53233955
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   | ||||||||||| |||| | |||||| |||| ||||||| ||||||||||||||||   || |||||||||| |||| |    
T  53234076 cttggagtttgctcctccagaagtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctctaaacg 53233981  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  53233980 gggcccccgcaagtgggcggtgggat 53233955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 35623305 - 35623267
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  35623305 ccttggagtgtgctcctctcaaggtctcatgttcgattc 35623267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 88
Target Start/End: Original strand, 40777052 - 40777082
Alignment:
Q  58 ttggagtgtgctcctctcaaggtctcaggtt 88  Q
    |||||||||||||||||||||||||||||||    
T  40777052 ttggagtgtgctcctctcaaggtctcaggtt 40777082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 1712875 - 1712834
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctc 70  Q
    ||||||||||||||||| || ||||| |||||||||||||||    
T  1712875 ggttggtctggtgatgttggcttgagaccttggagtgtgctc 1712834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 8097386 - 8097324
Alignment:
Q  114 ggctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtgggat 180  Q
    |||||||||||||||||| |    ||||||||||||||| ||| ||||||||||||| | |||||||    
T  8097386 ggctaagtccatacagagca----tgctctggctttaaacggggcccccgcaagtgggcggtgggat 8097324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 10682988 - 10682860
Alignment:
Q  50 ttgaggccttggagtgtgctcctctcaaggtctcaggttccattc-ccctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctt 148  Q
    ||||| |||||||||||||| ||||||| ||||||||||| |||| || ||||  |||| || | ||   ||||||||||    |||| ||| || ||||    
T  10682988 ttgagaccttggagtgtgcttctctcaaagtctcaggttcaattctccttggtcccaatttcagcgggctagtccataca---aagctttgcgctagctt 10682892  T
Q  149 taaatgggacccccgcaagtggacagtgggat 180  Q
    |||||||||||  | |||||||||||||||||    
T  10682891 taaatgggacctacacaagtggacagtgggat 10682860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 36660801 - 36660838
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  36660801 cttggagtttgctcctctcaaggtctcaggttcaattc 36660838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 39042018 - 39041907
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   |||||||| |||| |||| | |||||| |||| ||||||| |||||||||| |||||   || ||||||||||||||| |    
T  39042018 cttggagtttgctcctccagaggtctcaagttcgattctctctggtgccaatttcggtgggctaagtccatgcagag---ct-tgctctggctttaaacg 39041923  T
Q  155 ggacccccgcaagtgg 170  Q
    || |||||||||||||    
T  39041922 gggcccccgcaagtgg 39041907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 169
Target Start/End: Complemental strand, 53424342 - 53424233
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| ||||||  ||||| |||| ||||| ||||||||||||||||||    | |||| |||||||||| |    
T  53424342 cttggagtttgctcctccagaggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagag----tttgctatggctttaaacg 53424247  T
Q  155 ggacccccgcaagtg 169  Q
    || ||||||||||||    
T  53424246 gg-cccccgcaagtg 53424233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 4252562 - 4252490
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccataca 128  Q
    |||||||||||||||||||||||||||| |||  |||||| |||||| |||| || |||   |||||||||||    
T  4252562 cttggagtgtgctcctctcaaggtctcaagtttgattccctctggtgccaatttcagtgatcaagtccataca 4252490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 37046995 - 37047144
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccatt-cccctggtgtcaatgtcggtggctaagtccatac 127  Q
    ||||||||||||| ||| || ||| | |||||||||||||||||||||||||||||||||  ||| ||||||||   ||| | |||||   |||||||||    
T  37046995 ggttggtctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggtttgattccccctggtacaaattttggtgggctagtccatac 37047094  T
Q  128 agaggagctatgctctggctttaaatgggacccccgcaagtggacagtgggat 180  Q
    |   ||||| |||||| |||||||||||| ||||| ||||||||| |||||||    
T  37047095 a---gagctttgctctagctttaaatggggcccccacaagtggacggtgggat 37047144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 19480565 - 19480688
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccct-ggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    ||||||||||||||||||||||||||||  ||| |||||||  |||| |||| |  |||| ||||||||||| ||||   ||||||||||||||||||||    
T  19480565 cttggagtgtgctcctctcaaggtctcacattcgattccccgcggtgccaattttagtgggctaagtccatatagag---ctatgctctggctttaaatg 19480661  T
Q  155 gg-acccccgcaagtggacagtgggat 180  Q
    || ||||||||| |||||| |||||||    
T  19480662 ggtacccccgcacgtggacggtgggat 19480688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 30677210 - 30677328
Alignment:
Q  60 ggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatggga 157  Q
    ||||| ||||||||  |||||||||||||  |||||| |||||| |||| ||||||| ||||||||||||||||   || |||| |||||||||||||||    
T  30677210 ggagtttgctcctccaaaggtctcaggtttgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctttggctttaaatggga 30677305  T
Q  158 cccccgcaagtggacagtgggat 180  Q
    ||||||||||||| | |||||||    
T  30677306 cccccgcaagtgggcggtgggat 30677328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 24674424 - 24674545
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  24674424 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 24674519  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  24674520 gggcccccgcaagtgggcggtgggat 24674545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 32729580 - 32729696
Alignment:
Q  61 gagtgtgctcctctcaaggtctcaggttccattcccc-tggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgggacc 159  Q
    |||| |||||||||||| ||||||||||| ||||||  ||||| |||| |||||||  ||||||||||||||   || |||||||||||||||||||  |    
T  32729580 gagtttgctcctctcaaagtctcaggttcgattccctatggtgccaatttcggtgggcaagtccatacagag---ct-tgctctggctttaaatggggtc 32729675  T
Q  160 cccgcaagtggacagtgggat 180  Q
    ||||||||||| | |||||||    
T  32729676 cccgcaagtgggcggtgggat 32729696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 4621403 - 4621282
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  4621403 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 4621308  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    ||  |||||||||||| | |||||||    
T  4621307 gggtccccgcaagtgggcggtgggat 4621282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 225
Target Start/End: Complemental strand, 39714816 - 39714650
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccct-ggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    |||||||||||||||||||||||||||| |||  |||| ||| |||| | || |||||||   ||||||   || |||||| |||||||| |||||||||    
T  39714816 cttggagtgtgctcctctcaaggtctcaagtttgattctcctcggtgccgatttcggtgggctagtcca---aggggagctttgctctggatttaaatgg 39714720  T
Q  156 gacccccgcaagtggacagtgggatcagccctcttggattagtctgtcctgcggctagataccgagtttt 225  Q
    | ||||| ||||||||  |||||||  | |  || ||||||||| |||||  |||| |||||||||||||    
T  39714719 gccccccacaagtggatggtgggattggactcctcggattagtcggtccttgggctggataccgagtttt 39714650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 46607841 - 46607962
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||| ||||||| |    
T  46607841 cttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctgactttaaaag 46607936  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    |  ||||||||||||| | |||||||    
T  46607937 gcccccccgcaagtgggcggtgggat 46607962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 6128051 - 6127987
Alignment:
Q  30 gttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||||||||| ||| |||||| | |||||||| |||||||||||||||||||| |||| ||||    
T  6128051 gttggtctggtggtgttggtttgggaccttggagcgtgctcctctcaaggtctcaagttcgattc 6127987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 24217009 - 24217081
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccatt-cccctggtgtcaatgtcggtggctaagtccataca 128  Q
    ||||||||||||||||||||||||||||||||| ||| ||  ||||| |||| ||||||| ||| ||||||||    
T  24217009 cttggagtgtgctcctctcaaggtctcaggttcgattacctttggtgccaatttcggtgggtaaatccataca 24217081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 39964542 - 39964602
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg 115  Q
    |||||||||||||||||||||||||||||||||  |||||| |||||| |||| |||||||    
T  39964542 ccttggagtgtgctcctctcaaggtctcaggtttgattccctctggtgccaatttcggtgg 39964602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 7766893 - 7766772
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| ||||||  ||| ||||||| ||||||||||||||||   || ||||||| ||||||| |    
T  7766893 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgctaatttcggtgggctaagtccatacagag---ct-tgctctgactttaaacg 7766798  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  7766797 gggcccccgcaagtgggcggtgggat 7766772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 8077678 - 8077799
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||| | |||||| |||| ||||||| ||||||||||||||||   || |||||||||||||||      
T  8077678 cttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaaca 8077773  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  8077774 gggcccccgcaagtgggcggtgggat 8077799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 23232411 - 23232316
Alignment:
Q  77 aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtgg 170  Q
    |||| |||||||| |||||| |||| | |||| ||||||| ||||||||||||||||     | ||||||||||||||||||||||||||||||||    
T  23232411 aggtttcaggttcgattccctctggcgccaatttcggtgggctaagtccatacagagcttgcaagctctggctttaaatgggacccccgcaagtgg 23232316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 24122074 - 24122175
Alignment:
Q  77 aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacag 174  Q
    ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| ||| | ||||||||||| | |    
T  24122074 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacggggctcccgcaagtgggcgg 24122169  T
Q  175 tgggat 180  Q
    ||||||    
T  24122170 tgggat 24122175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 25237155 - 25237080
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagag 131  Q
    |||||||| |||| ||||||||||||||||||| |||||| || ||| |||| |||||||  ||||||||||||||    
T  25237155 cttggagtttgcttctctcaaggtctcaggttcgattccctctagtgccaatttcggtgggcaagtccatacagag 25237080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 17935800 - 17935911
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||  || ||| |||| ||||||| ||||||||||||||||    | ||||||||||||||| |    
T  17935800 cttggagtttgctcctccagaggtctcaggttcgattccttctagtgccaatttcggtgggctaagtccatacagag----tttgctctggctttaaacg 17935895  T
Q  155 ggacccccgcaagtgg 170  Q
    || |||||||||||||    
T  17935896 gggcccccgcaagtgg 17935911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 47360552 - 47360439
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattcc-cctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    ||||||||||||||||||||||| |||||||||| | ||| ||  |||||||| || | ||   |||||||||   |||||| |||||||||||||||||    
T  47360552 ccttggagtgtgctcctctcaagatctcaggttcgaatcctcccagtgtcaatttctgcgggctagtccatac---ggagctttgctctggctttaaatg 47360456  T
Q  155 ggacccccgcaagtgga 171  Q
    |  ||||||| ||||||    
T  47360455 gcccccccgctagtgga 47360439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 15059568 - 15059457
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||| | |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  15059568 cttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 15059473  T
Q  155 ggacccccgcaagtgg 170  Q
    ||  ||||||||||||    
T  15059472 gggtccccgcaagtgg 15059457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 15581207 - 15581142
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||| |||||| ||| || ||| | ||||||||||||||||||| |||||||||||||| ||||    
T  15581207 ggttggcctggtggtgttggcttgggaccttggagtgtgctcctctaaaggtctcaggttcaattc 15581142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 45859209 - 45859136
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccataca 128  Q
    |||||||| |||||||||  ||||||||||||| |||||| |||||| |||| ||||| |||||||||||||||    
T  45859209 cttggagtttgctcctctagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 45859136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 33905676 - 33905555
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| ||||| ||||| ||||| || |||||||||||||||    | || |||||||||||| |    
T  33905676 cttggagtttgctcctccagaggtctcaggttcgattccctctggtatcaatttcggtgggttaagtccatacagag----tttgttctggctttaaacg 33905581  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || || ||| |||||||| |||||||    
T  33905580 gggcctccgtaagtggacggtgggat 33905555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 41470676 - 41470608
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattcccc 97  Q
    |||||| | |||| ||| || ||||| ||||||||| ||||||||||||||||||| |||| |||||||    
T  41470676 ggttggcccggtggtgttggcttgagaccttggagtatgctcctctcaaggtctcaagttcgattcccc 41470608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 1138610 - 1138685
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattc-ccctggtgtcaatgtcggtggctaagtccatacagag 131  Q
    |||||||||||||||||||||||||| |||||| | || | || ||| |||| |||||||  ||||||||||||||    
T  1138610 cttggagtgtgctcctctcaaggtcttaggttcgaatctctctagtgccaatttcggtggacaagtccatacagag 1138685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 1486457 - 1486524
Alignment:
Q  65 gtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagag 131  Q
    ||||| ||||||||||||||||||| ||||||  ||||| |||| ||| ||| |||||||||||||||    
T  1486457 gtgctactctcaaggtctcaggttcgattccctttggtgccaatttcgatgggtaagtccatacagag 1486524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 20907423 - 20907352
Alignment:
Q  61 gagtgtgctcctctcaaggtctcaggttccattc-ccctggtgtcaatgtcggtggctaagtccatacagag 131  Q
    |||||||||||||||||||||||| |||| |||| |  ||||| |||| || |||| |||||||||||||||    
T  20907423 gagtgtgctcctctcaaggtctcacgttcaattcactttggtgccaatttcagtgggtaagtccatacagag 20907352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 30043654 - 30043603
Alignment:
Q  37 tggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggtt 88  Q
    ||||| |||||| ||||| |||||||||||||| || |||||||||||||||    
T  30043654 tggtggtgtaggcttgagaccttggagtgtgcttctatcaaggtctcaggtt 30043603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 44417500 - 44417449
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattcccctggtgtcaat 107  Q
    |||||||||||||| ||||||||||||||||||  ||||||| |||| ||||    
T  44417500 ccttggagtgtgctgctctcaaggtctcaggtttgattcccccggtgccaat 44417449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 34228885 - 34228943
Alignment:
Q  30 gttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggtt 88  Q
    |||||||||||| ||| || ||| | ||| |||||||| ||||||||||||||||||||    
T  34228885 gttggtctggtggtgttggcttgggacctcggagtgtgttcctctcaaggtctcaggtt 34228943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 34778449 - 34778510
Alignment:
Q  138 tgctctggctttaaatgggacccccgcaagtggacagtgggatcagccctcttggattagtc 199  Q
    |||| |||||||||| ||| ||||||||||||||| |||||||  | || ||||||||||||    
T  34778449 tgctttggctttaaacggggcccccgcaagtggacggtgggattggtccccttggattagtc 34778510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 49101807 - 49101731
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccatt-cccctggtgtcaatgtcggt-ggctaagtccatacagag 131  Q
    ||||||||||||||||||||||||||| |  ||  ||| ||||||||| |||| ||||| ||||||||||||||||||    
T  49101807 ccttggagtgtgctcctctcaaggtcttacatttgattccccctggtgccaat-tcggtgggctaagtccatacagag 49101731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 809253 - 809325
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccatt-cccctggtgtcaatgtcggtggctaagtccataca 128  Q
    |||||||| | ||||||| |||||||||||||  ||| ||||| |||||||| |||||||  |||||||||||    
T  809253 cttggagtttactcctcttaaggtctcaggtttgattacccctagtgtcaatttcggtgggcaagtccataca 809325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 4824981 - 4825041
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctc-tcaaggtctcaggtt 88  Q
    |||||||||| || ||| || ||| | |||||||||||||||||| |||||||||||||||    
T  4824981 ggttggtctgatggtgttggcttgggaccttggagtgtgctcctcttcaaggtctcaggtt 4825041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 13857890 - 13857842
Alignment:
Q  47 ggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattcc 95  Q
    |||||| | |||||||| |||||||| |||||||||||||||| |||||    
T  13857890 ggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattcc 13857842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 18928375 - 18928407
Alignment:
Q  62 agtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||||||||||||||||||||||||| ||||    
T  18928375 agtgtgctcctctcaaggtctcaggttcaattc 18928407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 36921596 - 36921556
Alignment:
Q  141 tctggctttaaatgggac-ccccgcaagtggacagtgggat 180  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  36921596 tctggctttaaatgggaccccccgcaagtggacggtgggat 36921556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 38939239 - 38939271
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggtt 88  Q
    |||||||||||||||||||||||||||| ||||    
T  38939239 ccttggagtgtgctcctctcaaggtctctggtt 38939271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 39012328 - 39012388
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattcccct-ggtgtcaatgtcggtgg 115  Q
    ||||||||||||||| ||||||||||| |||||  |||||||| |||| |||| |||||||    
T  39012328 ccttggagtgtgctcttctcaaggtcttaggtttgattcccctcggtgccaatttcggtgg 39012388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 44486196 - 44486168
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctca 84  Q
    |||||||||||||||||||||||||||||    
T  44486196 ccttggagtgtgctcctctcaaggtctca 44486168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 1222 - 1101
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||| | |||| ||||||| ||||||||||||||||   || |||||||||||||||||    
T  1222 cttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaatg 1127  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||||| |||||||    
T  1126 gggcccccgcaagtggacggtgggat 1101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 9465 - 9344
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||| | |||| ||||||| ||||||||||||||||   || |||||||||||||||||    
T  9465 cttggagtttgctcctccagaggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaatg 9370  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||||| |||||||    
T  9369 gggcccccgcaagtggacggtgggat 9344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 12166 - 12046
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| ||| || |||| | |||| ||||||| ||||||||||||||||   || |||||||||||||||||    
T  12166 cttggagtttgctcctccagaggtctcaggttcgatttcctctggagccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaatg 12071  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    ||  |||| ||||||||| |||||||    
T  12070 gg-gccccacaagtggacggtgggat 12046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 3734789 - 3734668
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  3734789 cttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 3734694  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||| ||| |||||||||    
T  3734693 gggcccccgcaaatgggcagtgggat 3734668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 34639372 - 34639298
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccctggtgtcaatgtcggtggctaagtccatacagag 131  Q
    |||||||||||||||||||||||||||||| || || || |||||| |||| ||||||| |||||||||||||||    
T  34639372 cttggagtgtgctcctctcaaggtctcaggctcgatccctctggtgccaatttcggtgggtaagtccatacagag 34639298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 39349291 - 39349412
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  39349291 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 39349386  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  39349387 gggcccccgcaagtgggcggtgggat 39349412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 4718680 - 4718801
Alignment:
Q  57 cttggagtgtgctcctctca-aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaat 153  Q
    |||||||| ||||||| ||| ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || |||||||||||||||     
T  4718680 cttggagtttgctcct-tcagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaac 4718774  T
Q  154 gggacccccgcaagtggacagtgggat 180  Q
    ||| ||||||||||||| | |||||||    
T  4718775 ggggcccccgcaagtgggcggtgggat 4718801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 169
Target Start/End: Complemental strand, 34237821 - 34237711
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  34237821 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 34237726  T
Q  155 ggacccccgcaagtg 169  Q
    || ||||||||||||    
T  34237725 gggcccccgcaagtg 34237711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 15259552 - 15259461
Alignment:
Q  77 aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtgg 170  Q
    ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| ||| |||||||||||||    
T  15259552 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacggggcccccgcaagtgg 15259461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 20305947 - 20306064
Alignment:
Q  61 gagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggac 158  Q
    |||| ||||||||  |||||||||| ||| |||||  |||||| |||| ||| ||| ||||||||||||||||   || ||||||||||||||| |||||    
T  20305947 gagtttgctcctccaaaggtctcagtttcgattccttctggtgccaatttcgatgggctaagtccatacagag---ct-tgctctggctttaaacgggac 20306042  T
Q  159 ccccgcaagtggacagtgggat 180  Q
    |||||||||||| | |||||||    
T  20306043 ccccgcaagtgggcggtgggat 20306064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 21092580 - 21092697
Alignment:
Q  61 gagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggac 158  Q
    |||| ||||||||  |||||||||| ||| |||||  |||||| |||| ||| ||| ||||||||||||||||   || ||||||||||||||| |||||    
T  21092580 gagtttgctcctccaaaggtctcagtttcgattccttctggtgccaatttcgatgggctaagtccatacagag---ct-tgctctggctttaaacgggac 21092675  T
Q  159 ccccgcaagtggacagtgggat 180  Q
    |||||||||||| | |||||||    
T  21092676 ccccgcaagtgggcggtgggat 21092697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 47 - 170
Target Start/End: Original strand, 28964058 - 28964179
Alignment:
Q  47 ggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctg 144  Q
    ||||||||  ||| |||| ||||||||| ||||| ||| |||| |||||  |||||| |||| ||||||| ||||||||||||   ||||||||| ||||    
T  28964058 ggtttgagatcttagagtttgctcctcttaaggtttcatgttcgattccatctggtgccaatttcggtgggctaagtccatac---ggagctatg-tctg 28964153  T
Q  145 gctttaaatgggacccccgcaagtgg 170  Q
    |||||||| ||| |||||||||||||    
T  28964154 gctttaaacggggcccccgcaagtgg 28964179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 40137001 - 40136942
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattcccctggtgtcaatgtcggtgg 115  Q
    |||||||||||||||||||||||||||||||||  |||| || |||| |||| |||||||    
T  40137001 ccttggagtgtgctcctctcaaggtctcaggtttgattctcccggtgccaatttcggtgg 40136942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 6953159 - 6953064
Alignment:
Q  71 ctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagt 168  Q
    |||| |||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || |||||||||||||||  || |||||||||||    
T  6953159 ctctaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacagggcccccgcaagt 6953064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 26169014 - 26168904
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcc-cctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    |||||||| |||||||||||||||||||||||  ||||| |||| || |||| |||||||  |||| |||||||||   || || ||||||||||||||     
T  26169014 cttggagtttgctcctctcaaggtctcaggtttgattcctcctgatgccaatttcggtgggcaagttcatacagag---ct-tgttctggctttaaatga 26168919  T
Q  156 gacccccgcaagtgg 170  Q
    | ||| |||||||||    
T  26168918 gcccctcgcaagtgg 26168904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 27746501 - 27746425
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagag 131  Q
    |||||||| ||||||||  |||||||||||||| ||||||  ||||| |||| ||||| ||||||||||||||||||    
T  27746501 cttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagag 27746425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 41070796 - 41070868
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccataca 128  Q
    ||||||||||||| |||||||||||||| |||| ||||||  |||||||||| |||||||  |||| ||||||    
T  41070796 cttggagtgtgctactctcaaggtctcaagttcgattccctttggtgtcaatttcggtgggcaagttcataca 41070868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 6530817 - 6530904
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattc-ccctggtgtcaatgtcggtgg 115  Q
    |||||| |||||| ||| || ||| | ||| |||||||||||||||||| ||||||||||| |||| ||| |||| |||| |||||||    
T  6530817 ggttggcctggtggtgttggcttgggacctaggagtgtgctcctctcaatgtctcaggttcgattctccccggtgccaatatcggtgg 6530904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 21603285 - 21603386
Alignment:
Q  77 aggtctcaggttccattcccc-tggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacag 174  Q
    ||||||||||||| ||||||  ||||| |||| ||||||| ||||| ||||||||||   || ||||||||||||||| ||| ||||||||||||| | |    
T  21603285 aggtctcaggttcgattccctatggtgccaatttcggtgggctaagcccatacagag---ct-tgctctggctttaaacggggcccccgcaagtgggcgg 21603380  T
Q  175 tgggat 180  Q
    ||||||    
T  21603381 tgggat 21603386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 28193509 - 28193630
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggct-aagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| | ||||||||||||||   || ||||||||||||||| |    
T  28193509 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggttaagtccatacagag---ct-tgctctggctttaaacg 28193604  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||  ||||||| | |||||||    
T  28193605 gggcccctacaagtgggcggtgggat 28193630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 15974940 - 15974998
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccctggtgtcaatgtcggtgg 115  Q
    |||||||| ||||||||||||||||||| |||| |||||||| |||  ||| |||||||    
T  15974940 cttggagtatgctcctctcaaggtctcaagttcgattcccctagtgcaaatttcggtgg 15974998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 18128548 - 18128669
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    |||| ||||||||||| ||||||||| || ||| |||| | |||||| |||| |||||||   | |||||| ||||   || ||||||||||||||| ||    
T  18128548 cttgaagtgtgctcctttcaaggtcttagattcgattctctctggtgccaatttcggtgggcgaatccataaagag---ctttgctctggctttaaacgg 18128644  T
Q  156 gacccccgcaagtggacagtgggat 180  Q
    | ||||||||||||| | |||||||    
T  18128645 ggcccccgcaagtgggcggtgggat 18128669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 28908857 - 28908969
Alignment:
Q  58 ttggagtgtgctcctctcaag--gtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    ||||||| |||||||||||||  || |||||||| |||||| |||||||||||  | ||||  |||||||||||   ||||| || |||||||||||| |    
T  28908857 ttggagtttgctcctctcaaggtgtttcaggttcaattccctctggtgtcaattacagtgggcaagtccataca---gagctttgttctggctttaaacg 28908953  T
Q  155 ggacccccgcaagtgg 170  Q
    || | |||||||||||    
T  28908954 gggctcccgcaagtgg 28908969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 36094729 - 36094791
Alignment:
Q  67 gctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccataca 128  Q
    ||||||||||||||||||||||| |||||| ||||| ||||| ||||| |  |||||||||||    
T  36094729 gctcctctcaaggtctcaggttcgattccctctggtatcaatttcggtagacaagtccataca 36094791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 22779692 - 22779725
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttc 89  Q
    ||||||| ||||||||||||||||||||||||||    
T  22779692 ccttggaatgtgctcctctcaaggtctcaggttc 22779725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 26688875 - 26688936
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcct-ctcaaggtctcaggttc 89  Q
    |||||| |||||| ||| || ||| | ||||||||||||||||| |||||||||||||||||    
T  26688875 ggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggttc 26688936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 7507471 - 7507419
Alignment:
Q  28 tggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggt 80  Q
    |||||| ||||||| ||| |||||||| | ||| |||||||||||||||||||    
T  7507471 tggttgatctggtgttgttggtttgagactttgaagtgtgctcctctcaaggt 7507419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 8765669 - 8765571
Alignment:
Q  80 tctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtgg 177  Q
    |||||||||| |||||| |||||| |||| ||| ||| ||||||||||||||||   || ||||||||||||||| ||| | ||||||||||| | ||||    
T  8765669 tctcaggttcgattccctctggtgccaatttcgatgggctaagtccatacagag---ct-tgctctggctttaaacggggctcccgcaagtgggcggtgg 8765574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 9126622 - 9126582
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattccc 96  Q
    |||||||||||||||||||||||| |||| |||| ||||||    
T  9126622 ccttggagtgtgctcctctcaaggactcaagttcgattccc 9126582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 14632989 - 14633065
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagag 131  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||| ||||||||| ||||||||    
T  14632989 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtctatacagag 14633065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 8192517 - 8192442
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagag 131  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||  ||||||||| ||||    
T  8192517 cttggagtgtgctcctctcaaggtctcaggttcgattccctctggtgccaatgtcggtgggcaagtccatatagag 8192442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 5394048 - 5394169
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||| |||||| ||||||||||| ||| | ||||||||||||||||||    | ||||||| |||||||||    
T  5394048 cttggagtttgctcctccaaaggtctcaggttcgattccctctggtgtcaatttcgatgggctaagtccatacagag----tttgctctgactttaaatg 5394143  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || || |||||||||| | |||||||    
T  5394144 gggccgccgcaagtgggcggtgggat 5394169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 26176364 - 26176243
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattc-ccctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||| ||||||||||||||||||||||| ||| |||| |||||||| |||| | ||||||  ||||||||||   || || |||| ||| ||||||||    
T  26176364 ccttggggtgtgctcctctcaaggtctcagattcgattctccctggtgccaattttggtggcctagtccataca---gacctttgctttggatttaaatg 26176268  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||||| |||||||    
T  26176267 gg-cccccgcaagtggacggtgggat 26176243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 4618851 - 4618744
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttcca-ttcccctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    |||||||| ||||||||||||||| |||||||| | ||||||||||| |||| |||| ||  |||||||||||    | || ||||||||||||||||||    
T  4618851 cttggagtatgctcctctcaaggtttcaggttcgatttcccctggtgccaatttcggcgggcaagtccataca---aaactttgctctggctttaaatgg 4618755  T
Q  156 gacccccgcaa 166  Q
    | |||||||||    
T  4618754 gtcccccgcaa 4618744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 17324797 - 17324917
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || |||||||||||||||||    
T  17324797 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaatg 17324892  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||| ||||||| | |||||||    
T  17324893 gg-cccccacaagtgggcggtgggat 17324917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 33827719 - 33827599
Alignment:
Q  77 aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacag 174  Q
    ||||||||||||| |||||| |||||| |||| ||| ||| ||||||||||||||||   || ||||||||||||||| |||||||| |||||||| | |    
T  33827719 aggtctcaggttcgattccctctggtgccaatttcgttgggctaagtccatacagag---ct-tgctctggctttaaacgggacccctgcaagtgggcgg 33827624  T
Q  175 tgggatcagccctcttggattagtc 199  Q
    ||||||  | || ||||||||||||    
T  33827623 tgggattggtccccttggattagtc 33827599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 27290619 - 27290729
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccct-ggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| | |||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  27290619 cttggagtttgctcctccagaggtctcaggttcgattcccttcggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 27290714  T
Q  155 ggacccccgcaagtg 169  Q
    || ||||||||||||    
T  27290715 ggccccccgcaagtg 27290729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 35171830 - 35171952
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaat 153  Q
    ||||||||| ||||||||   ||||||||||||| |||||| ||||   |||| ||||||| ||||||||||||||||   || |||||||||||||||     
T  35171830 ccttggagtttgctcctccagaggtctcaggttcgattccctctggcaccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaac 35171925  T
Q  154 gggacccccgcaagtggacagtgggat 180  Q
    ||| ||||||||||||| | |||||||    
T  35171926 ggggcccccgcaagtgggcggtgggat 35171952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 36390715 - 36390613
Alignment:
Q  76 aaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggaca 173  Q
    |||||||||||||| ||| || |||||| |||| ||||||| ||||||||||||| ||   || ||||||| ||||||||||||||||||||||||| |     
T  36390715 aaggtctcaggttcgatttcctctggtgccaatttcggtggactaagtccatacaaag---ct-tgctctgactttaaatgggacccccgcaagtgggcg 36390620  T
Q  174 gtgggat 180  Q
    |||||||    
T  36390619 gtgggat 36390613  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 11941376 - 11941255
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccc-tggtgtcaatgtcggtggct-aagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| ||||||  ||||| |||| | ||||| | ||||||||||||||   || ||||||||||||||| |    
T  11941376 cttggagtttgctcctccagaggtctcaggttcaattccctatggtgccaattttggtgggttaagtccatacagag---ct-tgctctggctttaaacg 11941281  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    |||||||||||||||| | |||||||    
T  11941280 ggacccccgcaagtgggcggtgggat 11941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 15037990 - 15038111
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccct-ggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||| |||||| | |||| |||| ||||||| ||||||||||||||||   || |||| |||||||||| |    
T  15037990 cttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagag---ct-tgctttggctttaaacg 15038085  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    |  ||||||||||||| | |||||||    
T  15038086 gagcccccgcaagtgggcggtgggat 15038111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 28194299 - 28194224
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattc-ccctggtgtcaatgtcggtggctaagtccatacagag 131  Q
    |||||||||||||||||| ||||||| |||||| |||| | |||||| |||| |||||||  ||||||||||||||    
T  28194299 cttggagtgtgctcctcttaaggtcttaggttcgattctctctggtgccaatttcggtgggcaagtccatacagag 28194224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 41314023 - 41314143
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| ||||||||||| ||||||| ||||||| ||||||||   || ||||||| ||||||| |    
T  41314023 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgtcaatttcggtgggctaagtctatacagag---ct-tgctctgactttaaacg 41314118  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    ||| ||| |||||||||| |||||||    
T  41314119 ggatccc-gcaagtggacggtgggat 41314143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 6099557 - 6099519
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  6099557 ccttggagtgtgctcctctcaaggtctcaggttcgattc 6099519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 30466995 - 30466875
Alignment:
Q  58 ttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    ||||||| || ||||||  ||||||||||||| |||| | ||| || |||| ||||||| ||||||||||||||||   || |||||||||||||||  |    
T  30466995 ttggagtttgttcctctagaggtctcaggttcgattctctctgctgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaaccg 30466900  T
Q  156 gacccccgcaagtggacagtgggat 180  Q
    | ||||||||||||| |||||||||    
T  30466899 ggcccccgcaagtgggcagtgggat 30466875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 2140629 - 2140531
Alignment:
Q  77 aggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatggg-acccccgcaagtggacag 174  Q
    ||||||||||||| |||||| ||||||||||| |||||||   |||||||||||||   || |||||||||||||||||||  ||||||||||||| | |    
T  2140629 aggtctcaggttcgattccctctggtgtcaatttcggtgg---agtccatacagag---ct-tgctctggctttaaatgggcccccccgcaagtgggcgg 2140537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 41908704 - 41908643
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcct-ctcaaggtctcaggttc 89  Q
    |||||| |||||| ||| |||||||| ||||||||||||||||| |||||||||||| ||||    
T  41908704 ggttggcctggtggtgtcggtttgagaccttggagtgtgctcctcctcaaggtctcaagttc 41908643  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 10582156 - 10582080
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagag 131  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||| ||||||||||||||||||    
T  10582156 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag 10582080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 43964054 - 43963986
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattcccc 97  Q
    ||||||||| ||  ||| |||||| | ||||||||||||||||||||||||||||| |||  |||||||    
T  43964054 ggttggtctagtagtgttggtttgggaccttggagtgtgctcctctcaaggtctcatgtttgattcccc 43963986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 19606011 - 19605972
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc 96  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  19606011 cttggagtgcgctcctctcaaggtctcaggttcgattccc 19605972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 23787155 - 23787063
Alignment:
Q  76 aaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtgg 170  Q
    |||||||||||||  |||||| |||||| |||| ||||||| |||| |||||||||||    | ||||||| |||||||||||||| ||||||||||    
T  23787155 aaggtctcaggtttgattccctctggtgccaatttcggtgggctaaatccatacagag----tttgctctgactttaaatgggacctccgcaagtgg 23787063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 40591214 - 40591289
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttcca-ttcccctggtgtcaatgtcggtggctaagtccatacagag 131  Q
    ||||||||||||||||||||| ||||||||||  | |||  |||||| |||| |||||||  ||||||||||||||    
T  40591214 cttggagtgtgctcctctcaaagtctcaggtttgatttcttctggtggcaatttcggtgggcaagtccatacagag 40591289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 7250339 - 7250420
Alignment:
Q  143 tggctttaaatgggacccccgcaagtggacagtgggatcagccctcttggattagtctgtcctgcggctagataccgagtttt 225  Q
    |||||||||||||| |||||  ||||||||||||||||  | || || ||||||||| |||||  ||| ||||||||||||||    
T  7250339 tggctttaaatggg-ccccctaaagtggacagtgggattggacccctcggattagtccgtccttgggccagataccgagtttt 7250420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 18708508 - 18708629
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    ||||||||||| ||||||||||||||||||||| | |||| ||| |  |||| || ||||  | || ||||||   ||||| ||||||| ||| ||| ||    
T  18708508 cttggagtgtgttcctctcaaggtctcaggttcgactccctctgataccaatttcagtgggcatgttcataca---gagctttgctctgacttaaaacgg 18708604  T
Q  156 gacccccgcaagtggacagtgggat 180  Q
    ||||||||||| ||||| |||||||    
T  18708605 gacccccgcaaatggacggtgggat 18708629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 26482134 - 26482168
Alignment:
Q  60 ggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||||||||||||||||||||||||||| ||||    
T  26482134 ggagtgtgctcctctcaaggtctcaggttcgattc 26482168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 31778141 - 31778175
Alignment:
Q  138 tgctctggctttaaatgggacccccgcaagtggac 172  Q
    ||||||||||||||||||| |||||||||||||||    
T  31778141 tgctctggctttaaatggggcccccgcaagtggac 31778175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 29503299 - 29503360
Alignment:
Q  47 ggtttgaggccttggagtgtgctcctc-tcaaggtctcaggttccattcccctggtgtcaat 107  Q
    |||||| | ||| |||||||||||||| |||||||||||||||| |||| || |||||||||    
T  29503299 ggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcccggtgtcaat 29503360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 44976300 - 44976198
Alignment:
Q  77 aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggac-ccccgcaagtggaca 173  Q
    ||||||||||||| |||||| |||||| |||| | ||||| ||||||||||||||||    | ||||||||||||||| ||| | |||||||||||| |     
T  44976300 aggtctcaggttcgattccctctggtgccaattttggtgggctaagtccatacagag----tttgctctggctttaaacggggctccccgcaagtgggcg 44976205  T
Q  174 gtgggat 180  Q
    |||||||    
T  44976204 gtgggat 44976198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 19054056 - 19054178
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||  |||||  ||||||| ||  ||||||| ||||||||||||||||   || |||| ||||||||||||    
T  19054056 cttggagtctgctcctccaaaggtctcaggtttgattccttctggtgttaacttcggtgggctaagtccatacagag---ct-tgctttggctttaaatg 19054151  T
Q  155 gga-cccccgcaagtggacagtgggat 180  Q
    | | ||||||||||||| | |||||||    
T  19054152 gaaccccccgcaagtgggcggtgggat 19054178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 33696445 - 33696305
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || |||||||||||||||||    
T  33696445 cttggagtttgctcctccagaggtctcaggttcaattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaatg 33696350  T
Q  155 ggacccccgcaagtggacagtgggatcagccctcttggattagtc 199  Q
    || ||||||||||||| | ||| |||  | ||||| |||||||||    
T  33696349 gggcccccgcaagtgggcggtgagattggtcctctcggattagtc 33696305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 7392129 - 7392027
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccc-tggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    |||||||| ||||||||  |||||||||||||| ||||||  ||||| |||| ||||||| |||||||||||||||    | ||||||||||||||||||    
T  7392129 cttggagtttgctcctccaaaggtctcaggttcgattccctatggtgccaatttcggtggttaagtccatacagag----tttgctctggctttaaatgg 7392034  T
Q  156 gaccccc 162  Q
    |||||||    
T  7392033 gaccccc 7392027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 32986228 - 32986349
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||| |||||||||    
T  32986228 cttggagtttgctcctccagaggtctcaggttcaattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctgactttaaatg 32986323  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  32986324 gggcccccgcaagtgggcggtgggat 32986349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 40059018 - 40058897
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| |||||||||  ||||||||||||| |||| | |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  40059018 cttggagtttgctcctctagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 40058923  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  40058922 gggcccccgcaagtgggcggtgggat 40058897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 78 - 180
Target Start/End: Complemental strand, 5609347 - 5609247
Alignment:
Q  78 ggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagt 175  Q
    |||||||||||| |||| | |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||||||| ||||||||||||||| ||    
T  5609347 ggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaatggggcccccgcaagtggacggt 5609252  T
Q  176 gggat 180  Q
    |||||    
T  5609251 gggat 5609247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 37980213 - 37980148
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||| |||||||||| || ||| | |||||||||||||||||||||||||||||||||| ||||    
T  37980213 ggttggcctggtgatgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgattc 37980148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 25852245 - 25852367
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagaggagctatgctctggcttt-aaat 153  Q
    |||||||| ||||||||  |||||||||||||| |||||| |||||| |||| ||||| |||||||||||||||   ||||| |||||||||||| |||     
T  25852245 cttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca---gagct-tgctctggctttaaaac 25852340  T
Q  154 gggacccccgcaagtggacagtgggat 180  Q
    ||||||| ||||||||| || ||||||    
T  25852341 gggaccctcgcaagtgggcaatgggat 25852367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 34844924 - 34844803
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||| | |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  34844924 cttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 34844829  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  34844828 gggcccccgcaagtgggcggtgggat 34844803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 52983650 - 52983771
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| || |||| ||||||||||||||||   || ||||||||||||||| |    
T  52983650 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcagtgggctaagtccatacagag---ct-tgctctggctttaaacg 52983745  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  52983746 gggcccccgcaagtgggcggtgggat 52983771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 54127508 - 54127387
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||| |||||| || ||| |||| ||||||| ||||||| ||||||||   || ||||||||||||||| |    
T  54127508 cttggagtttgctcctccaaaggtctcaggttcaattccctcttgtgccaatttcggtgggctaagtctatacagag---ct-tgctctggctttaaacg 54127413  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  54127412 gggcccccgcaagtgggcggtgggat 54127387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 13771649 - 13771536
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||| ||| ||||| |||||||||||||  ||| |||||| ||| ||||||| ||||||| ||||||||||||   | |||||||||||||||||||| |    
T  13771649 cttgaagtttgctcatctcaaggtctcaaattcgattccctctgatgtcaatctcggtgggctaagtccatac---gaagctatgctctggctttaaacg 13771553  T
Q  155 ggacccccgcaagtgga 171  Q
    || | ||||||||||||    
T  13771552 gggctcccgcaagtgga 13771536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 27528961 - 27528850
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||| | |    
T  27528961 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttatacg 27528866  T
Q  155 ggacccccgcaagtgg 170  Q
    || |||||||||||||    
T  27528865 gggcccccgcaagtgg 27528850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 37455609 - 37455658
Alignment:
Q  58 ttggagtgtgctcctctcaaggtctcaggttccattcccctggtgtcaat 107  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| ||||    
T  37455609 ttggagtatgctcctctcaaggtctcaggttcgattcccctggtgccaat 37455658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 20078150 - 20078029
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||  |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  20078150 cttggagtttgctcctccagaggtctcaggtttgattcccactggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 20078055  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || |||||| |||||| | |||||||    
T  20078054 gggcccccgtaagtgggcggtgggat 20078029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 56409988 - 56410035
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattc-ccctggtg 102  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  56409988 ccttggagtgtgctcctctcaaggtctcaggttcgattctccctggtg 56410035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 27908541 - 27908587
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattcccctggtg 102  Q
    |||||||||||| |||||||||||||||| |||||||||| ||||||    
T  27908541 ccttggagtgtgttcctctcaaggtctcaagttccattccgctggtg 27908587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 21344827 - 21344892
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||| ||| |||||| || ||| | ||||||||||||||||||||||||||||| |||| ||||    
T  21344827 ggttggcctgatgatgttggcttgggaccttggagtgtgctcctctcaaggtctcatgttcaattc 21344892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 28929709 - 28929805
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattcccctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||  || |||| | ||||| |||||| ||||||    ||||||||| ||||||||||||    
T  28929709 ccttgaagtgtgctcctttcaaggtctcaggttcgattccccttatgccaatttgggtggtctaagttcataca---aagctatgctttggctttaaatg 28929805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 38206164 - 38206132
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggtt 88  Q
    |||||||||||||||||||||||||||||||||    
T  38206164 ccttggagtgtgctcctctcaaggtctcaggtt 38206132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 38740888 - 38740940
Alignment:
Q  64 tgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg 115  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||| |||||||    
T  38740888 tgtgctcctcttaaggtctcaggttcgattccctctggtgtcaatttcggtgg 38740940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 13017760 - 13017799
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc 96  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  13017760 cttgaagtgtgttcctctcaaggtctcaggttccattccc 13017799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 4686172 - 4686134
Alignment:
Q  50 ttgaggccttggagtgtgctcctctcaaggtctcaggtt 88  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  4686172 ttgagaccttggagtgtgctcctctcaatgtctcaggtt 4686134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 25414259 - 25414221
Alignment:
Q  50 ttgaggccttggagtgtgctcctctcaaggtctcaggtt 88  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  25414259 ttgagaccttggagtgtgctcctctcaaagtctcaggtt 25414221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 3392825 - 3392772
Alignment:
Q  63 gtgtgctcctctcaaggtctcaggttcca-ttcccctggtgtcaatgtcggtgg 115  Q
    ||||||||||||||||||||||||||| | |||| ||||||| ||| |||||||    
T  3392825 gtgtgctcctctcaaggtctcaggttcgatttcctctggtgttaatttcggtgg 3392772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 12500224 - 12500113
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| |||||||   |||||||||||||  |||||| |||||| |||| ||  ||| ||||||||||||| ||   || ||||||||||||||| |    
T  12500224 cttggagtttgctccttcaaaggtctcaggtttgattccctctggtgccaatttcaatgggctaagtccatacatag---ct-tgctctggctttaaacg 12500129  T
Q  155 ggacccccgcaagtgg 170  Q
    ||||||||||||||||    
T  12500128 ggacccccgcaagtgg 12500113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 25969668 - 25969592
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctc--aggttccatt-cccctggtgtcaatgtcggtggctaagtccatacaga 130  Q
    |||||||| |||||||||||||||| |  |||||  ||| ||||||||| |||| |||||||| |||||||||||||    
T  25969668 cttggagtttgctcctctcaaggtcccagaggttggattccccctggtgccaatttcggtggccaagtccatacaga 25969592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 29195105 - 29195170
Alignment:
Q  29 ggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    |||||| |||||| ||| || ||| | |||||||||||||||||||||||||| || |||| ||||    
T  29195105 ggttggcctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtcgcaagttcgattc 29195170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 31141382 - 31141349
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttc 89  Q
    ||||||||||||||||||||||||||| ||||||    
T  31141382 ccttggagtgtgctcctctcaaggtctgaggttc 31141349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 32990488 - 32990587
Alignment:
Q  79 gtctcaggttccattcccctg-gtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtg 176  Q
    ||||||||||| |||||| |  ||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| ||| ||||||||||||| | |||    
T  32990488 gtctcaggttcgattccctttagtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacggggcccccgcaagtgggcggtg 32990583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 35674907 - 35674796
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||| ||  |||||| ||||||| |||||| |||| | |||| ||||||| ||||||||||||||||   || ||||||| ||||||| |    
T  35674907 cttggagtttgctcttccaaaggtcacaggttcgattccctctggagccaatttcggtgggctaagtccatacagag---ct-tgctctgcctttaaacg 35674812  T
Q  155 ggacccccgcaagtgg 170  Q
    || |||||||||||||    
T  35674811 gggcccccgcaagtgg 35674796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 37492756 - 37492723
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttc 89  Q
    |||||||||||| |||||||||||||||||||||    
T  37492756 ccttggagtgtgatcctctcaaggtctcaggttc 37492723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 40307574 - 40307642
Alignment:
Q  58 ttggagtgtgctcctctcaaggtctcaggttccattcccctggtgtcaatgtcggtggctaagtccatac 127  Q
    |||||||||||||||||||||||||||  ||  |||||  ||||| |||| |||||||| ||||||||||    
T  40307574 ttggagtgtgctcctctcaaggtctcatatttgattcctttggtgccaatttcggtggc-aagtccatac 40307642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 46714423 - 46714545
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattcccct--ggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaat 153  Q
    |||||||| ||||||||   ||||||||||||| ||| ||||  |||| |||| ||||||| ||||||||||||||||   || ||| || ||||||||     
T  46714423 cttggagtttgctcctccagaggtctcaggttcgatttccctttggtgccaatttcggtgggctaagtccatacagag---ct-tgcccttgctttaaac 46714518  T
Q  154 gggacccccgcaagtggacagtgggat 180  Q
    ||| ||||||||||||| | |||||||    
T  46714519 ggggcccccgcaagtgggcggtgggat 46714545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 5998726 - 5998698
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctca 84  Q
    |||||||||||||||||||||||||||||    
T  5998726 ccttggagtgtgctcctctcaaggtctca 5998698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 13873461 - 13873385
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggt-ggctaagtccatacagag 131  Q
    |||||||| |||||||   |||||||||||||| |||||| |||||| |||| ||||| |||||||| |||||||||    
T  13873461 cttggagtttgctccttcaaaggtctcaggttcgattccctctggtgccaatttcggtaggctaagttcatacagag 13873385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 19220564 - 19220596
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttc 89  Q
    |||||||||||||||||||||||| ||||||||    
T  19220564 cttggagtgtgctcctctcaaggtttcaggttc 19220596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 25434697 - 25434665
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggtt 88  Q
    |||||||||||||| ||||||||||||||||||    
T  25434697 ccttggagtgtgcttctctcaaggtctcaggtt 25434665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 28791146 - 28791218
Alignment:
Q  58 ttggagtgtgctc-ctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccataca 128  Q
    ||||||| ||||| |||| ||||||| |||||||||| || ||||||||||| ||||||| |||||| |||||    
T  28791146 ttggagtatgctctctcttaaggtcttaggttccattacctctggtgtcaatttcggtgggtaagtctataca 28791218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 42281272 - 42281240
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggtt 88  Q
    ||||| |||||||||||||||||||||||||||    
T  42281272 ccttgtagtgtgctcctctcaaggtctcaggtt 42281240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 45787811 - 45787749
Alignment:
Q  114 ggctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtgggat 180  Q
    ||||||||||||||||||   || |||||||||||||||  || ||||||||||||||| |||||||    
T  45787811 ggctaagtccatacagag---ct-tgctctggctttaaacagggcccccgcaagtggacggtgggat 45787749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 5248 - 5127
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||  |||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||||||||||| |    
T  5248 cttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaacg 5153  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||| ||| | |||||||    
T  5152 gggcccccgcaaatgggcggtgggat 5127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 97532 - 97411
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||| ||| ||||||||  |||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || ||||||| ||||||| |    
T  97532 cttgtagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctgactttaaacg 97437  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    |||||||||||||||| | |||||||    
T  97436 ggacccccgcaagtgggcggtgggat 97411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 161840 - 161961
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || |||||||||||| ||||    
T  161840 cttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggcttttaatg 161935  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  161936 gggcccccgcaagtgggcggtgggat 161961  T

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Target: scaffold0160 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 29308 - 29188
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggctaagtccatacagaggagctatgctctggctttaaatgg 155  Q
    |||| |||||| |||||||||||||| |||||| |||||| ||| || || | ||||| | ||||||||||||   ||||| ||||||||||| |||| |    
T  29308 cttgaagtgtgttcctctcaaggtcttaggttcgattcccgctgatgccattttcggtcggtaagtccataca---gagctttgctctggcttaaaat-g 29213  T
Q  156 gacccccgcaagtggacagtgggat 180  Q
    ||||||||||| |||||||||||||    
T  29212 gacccccgcaaatggacagtgggat 29188  T

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Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 40356 - 40477
Alignment:
Q  57 cttggagtgtgctcctctca-aggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaat 153  Q
    |||||||| ||||||| ||| ||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||   || |||||||||||||||     
T  40356 cttggagtttgctcct-tcagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaac 40450  T
Q  154 gggacccccgcaagtggacagtgggat 180  Q
    ||| ||||||||||||| | |||||||    
T  40451 ggggcccccgcaagtgggcggtgggat 40477  T

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Target: scaffold0328 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 15022 - 15133
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtggct-aagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| |||||| ||||||  ||| ||||||| | |||||||| |||||   || |||||||||||||||||    
T  15022 cttggagtttgctcctccagaggtctcaggttcaattccctctggtgctaatttcggtgggttaagtccatccagag---ct-tgctctggctttaaatg 15117  T
Q  155 ggacccccgcaagtgg 170  Q
    || |||||||||||||    
T  15118 ggccccccgcaagtgg 15133  T

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Target: scaffold0459 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 10859 - 10739
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   ||||||||||||| ||| || |||| | |||| ||||||| ||||||||||||||||   || |||||||||||||||||    
T  10859 cttggagtttgctcctccagaggtctcaggttcgatttcctctggagccaatttcggtgggctaagtccatacagag---ct-tgctctggctttaaatg 10764  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    ||  |||| ||||||||| |||||||    
T  10763 gg-gccccacaagtggacggtgggat 10739  T

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Target: scaffold0217 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 7475 - 7354
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| ||||||||   || |||||||||| |||||| | |||| |||| ||||||| ||||||||||||||||   || | ||||||||||||| |    
T  7475 cttggagtttgctcctccagagatctcaggttcgattccctccggtgccaatttcggtgggctaagtccatacagag---cttt-ctctggctttaaacg 7380  T
Q  155 ggacccccgcaagtggacagtgggat 180  Q
    || ||||||||||||| | |||||||    
T  7379 gggcccccgcaagtgggcggtgggat 7354  T

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Target: scaffold0189 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 17762 - 17724
Alignment:
Q  56 ccttggagtgtgctcctctcaaggtctcaggttccattc 94  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  17762 ccttggagtgttctcctctcaaggtctcaggttcgattc 17724  T

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Target: scaffold1175 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1175
Description:

Target: scaffold1175; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 2533 - 2446
Alignment:
Q  114 ggctaagtccatacagaggagctatgctctggctttaaatgggacccccgcaagtggacagtgggatcagccctcttggattagtctgtcct 205  Q
    ||||||||||||||||||   || ||||||||||||||| ||| ||||||||||||| | |||||||  | || || ||||||||| |||||    
T  2533 ggctaagtccatacagag---ct-tgctctggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtccgtcct 2446  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 20253 - 20364
Alignment:
Q  57 cttggagtgtgctcctctcaaggtctcaggttccattccc-ctggtgtcaatgtcggtgg-ctaagtccatacagaggagctatgctctggctttaaatg 154  Q
    |||||||| |||||||   |||||||||||||  |||||| |||||| |||| ||  ||| ||||||||||||| ||   || ||||||||||||||| |    
T  20253 cttggagtttgctccttcaaaggtctcaggtttgattccctctggtgccaatttcaatgggctaagtccatacatag---ct-tgctctggctttaaacg 20348  T
Q  155 ggacccccgcaagtgg 170  Q
    ||||||||||||||||    
T  20349 ggacccccgcaagtgg 20364  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 240961 - 240896
Alignment:
Q  19 tacccacgatggttggtctggtgatgtaggtttgaggccttggagtgtgctcctctcaaggtctca 84  Q
    |||||||  ||||||||||| || ||| |||||| |  |||||||| |||||||||||||||||||    
T  240961 tacccactttggttggtctgatggtgttggtttgggatcttggagtatgctcctctcaaggtctca 240896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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