View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_63 (Length: 310)
Name: NF1250_low_63
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 72 - 300
Target Start/End: Complemental strand, 30685814 - 30685587
Alignment:
| Q |
72 |
acaacgtcttcgattataaaagcgtgacccaacatcacacccaatataagattataatttgaccacattttgcacactttcctcctcatttctctcacta |
171 |
Q |
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| T |
30685814 |
acaacgtcttcaattataaaagtgtgacccaacatcacacccaatgtatgattataatttgaccacattttgcacactttcctcctcatttctctcacta |
30685715 |
T |
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| Q |
172 |
acttgaacatcgaggtgctaatctgctttgcatgtctctttcccctcgtcggagaacaatctcctttgcaataccttcgaaagcacatctctatggagcc |
271 |
Q |
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| T |
30685714 |
acttgaacatcgaggtgctaatc-gctttgcatgtctctttcccctcgtcggagaacaatctcctttgcaataccttcgaaagcacatctctatggagcc |
30685616 |
T |
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| Q |
272 |
ccacgcagtgcaatgcaattttccctatg |
300 |
Q |
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| T |
30685615 |
ccacgcagtgcaatgcaattttccctatg |
30685587 |
T |
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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 26043367 - 26043268
Alignment:
| Q |
139 |
ttttgcacactttcctcctcatttctctcactaacttgaacatcgaggtgctaatctgctttgcatgtctctttcccctcgtcggagaacaatctccttt |
238 |
Q |
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||||||||| ||| ||||||| ||||||||||||||||||| ||| || ||| ||| |||||| ||||||||||||||| |||||||||| ||||||| |
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| T |
26043367 |
ttttgcacattttgctcctcaattctctcactaacttgaacgtcggagtcttaacctgttttgcaggtctctttcccctcggcggagaacaacctccttt |
26043268 |
T |
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