View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_67 (Length: 304)

Name: NF1250_low_67

Description: NF1250

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1250_low_67

[»] chr3 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 119; E-Value: 8e-61

Query Start/End: Original strand, 26 - 164

Target Start/End: Original strand, 51537983 - 51538121

Alignment:

Q	26	agaaactaccgacgaacaagacataaaggccctccaacgaacaactggcaactgacgaaacaaacacaacggacgagcaacaaaaaccacatgagggagc	125	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51537983	agaaactaccgacgaacaagacataaaggccctccaacaaacaactagcaactgaagaaacaaacacaaccgacgagcaacaaaaaccacatgagggagc	51538082	T

Q	126	ttaactccaaccaagcacaacaactcaatcccgaaacaa	164	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51538083	ttaacaccaaccaagcacaacaactcaatcccgaaacaa	51538121	T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 47; E-Value: 7e-18

Query Start/End: Original strand, 247 - 297

Target Start/End: Original strand, 43094182 - 43094232

Alignment:

Q	247	agttcttcattcacattctcattccaactattagtatcccaacctatgcta	297	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	43094182	agttcttcattcacattctcattccaactattagtatcccaacctttgcta	43094232	T

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