View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_69 (Length: 299)

Name: NF1250_low_69
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_69
NF1250_low_69
[»] chr2 (13 HSPs)
chr2 (78-261)||(41826619-41826802)
chr2 (77-210)||(15144208-15144349)
chr2 (78-205)||(40113466-40113605)
chr2 (85-211)||(3950063-3950198)
chr2 (78-213)||(24138440-24138584)
chr2 (78-211)||(23888338-23888480)
chr2 (78-211)||(23892414-23892556)
chr2 (85-205)||(670075-670199)
chr2 (78-213)||(14661318-14661462)
chr2 (78-241)||(662836-663003)
chr2 (78-154)||(18341573-18341655)
chr2 (78-154)||(17530028-17530110)
chr2 (118-154)||(450498-450534)
[»] chr8 (9 HSPs)
chr8 (78-243)||(44626178-44626351)
chr8 (78-205)||(26005484-26005622)
chr8 (78-213)||(32038046-32038190)
chr8 (78-213)||(38143933-38144078)
chr8 (78-213)||(17497452-17497595)
chr8 (117-198)||(45266087-45266171)
chr8 (117-170)||(38151028-38151081)
chr8 (172-211)||(27146-27185)
chr8 (117-156)||(18324949-18324988)
[»] chr1 (7 HSPs)
chr1 (78-232)||(39574550-39574711)
chr1 (86-232)||(39581107-39581260)
chr1 (78-158)||(47858163-47858249)
chr1 (78-155)||(9758362-9758445)
chr1 (78-155)||(9764978-9765060)
chr1 (78-153)||(41140929-41141010)
chr1 (119-156)||(24523142-24523179)
[»] chr3 (16 HSPs)
chr3 (78-213)||(32280712-32280857)
chr3 (79-205)||(3469908-3470042)
chr3 (78-213)||(31112435-31112574)
chr3 (78-213)||(32285656-32285801)
chr3 (78-205)||(45677835-45677972)
chr3 (79-205)||(19240464-19240598)
chr3 (78-205)||(39032685-39032828)
chr3 (78-200)||(29960875-29961006)
chr3 (78-200)||(30010080-30010211)
chr3 (78-155)||(39039758-39039840)
chr3 (117-165)||(38445746-38445794)
chr3 (116-155)||(39350958-39350997)
chr3 (77-156)||(46611872-46611957)
chr3 (116-166)||(50158274-50158324)
chr3 (85-154)||(11458194-11458269)
chr3 (116-156)||(41273064-41273104)
[»] chr6 (10 HSPs)
chr6 (85-229)||(27101564-27101716)
chr6 (85-229)||(27143386-27143538)
chr6 (85-210)||(9972836-9972972)
chr6 (85-205)||(23848518-23848646)
chr6 (117-211)||(32932257-32932353)
chr6 (85-205)||(18338175-18338305)
chr6 (78-205)||(7553362-7553500)
chr6 (78-155)||(19543516-19543599)
chr6 (85-167)||(22958071-22958160)
chr6 (85-167)||(23830232-23830321)
[»] chr7 (6 HSPs)
chr7 (78-241)||(26450833-26451003)
chr7 (85-201)||(267696-267820)
chr7 (78-213)||(32517173-32517319)
chr7 (78-213)||(48853655-48853799)
chr7 (78-157)||(29148714-29148798)
chr7 (118-154)||(40771313-40771349)
[»] chr5 (7 HSPs)
chr5 (78-205)||(22729888-22730023)
chr5 (78-210)||(35941063-35941202)
chr5 (78-245)||(11339880-11340054)
chr5 (77-156)||(43097500-43097585)
chr5 (78-141)||(36950147-36950216)
chr5 (116-188)||(10491257-10491330)
chr5 (160-213)||(36950068-36950123)
[»] chr4 (12 HSPs)
chr4 (77-204)||(42567597-42567731)
chr4 (78-205)||(24423153-24423289)
chr4 (85-169)||(35904976-35905066)
chr4 (78-155)||(6262260-6262343)
chr4 (78-144)||(33366813-33366885)
chr4 (78-154)||(36048945-36049027)
chr4 (77-156)||(13393676-13393761)
chr4 (77-156)||(13396815-13396900)
chr4 (118-155)||(54256359-54256396)
chr4 (116-151)||(44160724-44160759)
chr4 (171-213)||(33361763-33361805)
chr4 (177-249)||(2229029-2229101)
[»] scaffold0502 (2 HSPs)
scaffold0502 (85-205)||(8999-9129)
scaffold0502 (85-205)||(4299-4429)
[»] scaffold0040 (2 HSPs)
scaffold0040 (78-213)||(60354-60500)
scaffold0040 (78-213)||(67830-67976)
[»] scaffold1634 (1 HSPs)
scaffold1634 (78-158)||(26-112)
[»] scaffold0045 (1 HSPs)
scaffold0045 (85-154)||(30145-30220)
[»] scaffold0027 (1 HSPs)
scaffold0027 (85-154)||(134550-134625)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 78 - 261
Target Start/End: Original strand, 41826619 - 41826802
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctacccgtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattcgtgctaa 177  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41826619 gttggaccatttagctaagcccaatgagaggtccctgcccgtttagctatttaaacgtcatcccatcagacggttaaactactctgaacattcgtgctaa 41826718  T
Q  178 acggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaaagtatacagttccttattcc 261  Q
    ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||    
T  41826719 acggaatgagggtagtcatccctctcatccttctgatagttattcttcatcaatctaatttaaaagtatacaattccttattcc 41826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 15144349 - 15144208
Alignment:
Q  77 agttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc 170  Q
    ||||||| |||||| |||||||||||||||| ||||| |||      |||||||||||||||||||||||||||||| |||||||||| ||| |||||||    
T  15144349 agttggaccatttaactaagcccaatgagagatccctgccctcagccgtttagctatttaaatgtcatcccatcagatggttaaactattctaaacattc 15144250  T
Q  171 --gtgctaaacggaatgaggatagtcatccctctcattcttc 210  Q
      |||||||||||||||||| ||||||||| |||||| ||||    
T  15144249 tggtgctaaacggaatgagggtagtcatccgtctcatccttc 15144208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 40113466 - 40113605
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccat----cagacggttaaactactctgaaca 167  Q
    |||||| ||||||||||||||||||||||||||||| |||      ||||||||||||||| ||||||||||    || |||||||||||| ||||||||    
T  40113466 gttggaccatttagctaagcccaatgagaggtccctgccctcagctgtttagctatttaaacgtcatcccatgcatcaaacggttaaactattctgaaca 40113565  T
Q  168 ttc--gtgctaaacggaatgaggatagtcatccctctcat 205  Q
    |||  |||||||||||||||||| ||||||||||||||||    
T  40113566 ttctggtgctaaacggaatgagggtagtcatccctctcat 40113605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 3950063 - 3950198
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc---gtgct 175  Q
    ||||||||||||||||||||||||||| | |||      ||||| ||||||||| |||||||||| |||||| ||||||||| | ||||||    |||||    
T  3950063 catttagctaagcccaatgagaggtccttgccctcagccgtttaactatttaaacgtcatcccatgagacggataaactactataaacatttatggtgct 3950162  T
Q  176 aaacggaatgaggatagtcatccctctcattcttct 211  Q
    ||||||||||||| ||||||||||||||||||||||    
T  3950163 aaacggaatgagggtagtcatccctctcattcttct 3950198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 24138440 - 24138584
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaac-attc 170  Q
    |||||| ||||||| |||| |||||||||||||||| |||      ||||||||||||||| |||||||||||||||||||||| || |||||||  |||    
T  24138440 gttggaccatttagttaagtccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaaatattctgaactcttc 24138539  T
Q  171 --gtgctaaacggaatgaggatagtcatccctctcattcttctga 213  Q
      |||||| ||||||||||| |||||||| ||||||| |||||||    
T  24138540 tggtgctacacggaatgagggtagtcatctctctcatccttctga 24138584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 23888480 - 23888338
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaa--cat- 168  Q
    |||||| ||||||||||| ||||||||||||||||| |||      ||||||||||||||| ||||||||| ||||||||||||||| | ||||  | |     
T  23888480 gttggaccatttagctaatcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccaccagacggttaaactattgtgaattcttc 23888381  T
Q  169 tcgtgctaaacggaatgaggatagtcatccctctcattcttct 211  Q
    | |||||| ||||||||||| |||||||| ||||||| |||||    
T  23888380 tagtgctacacggaatgagggtagtcatctctctcatccttct 23888338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 23892556 - 23892414
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaa--cat- 168  Q
    |||||| ||||||||||| ||||||||||||||||| |||      ||||||||||||||| ||||||||| ||||||||||||||| | ||||  | |     
T  23892556 gttggaccatttagctaatcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccaccagacggttaaactattgtgaattcttc 23892457  T
Q  169 tcgtgctaaacggaatgaggatagtcatccctctcattcttct 211  Q
    | |||||| ||||||||||| |||||||| ||||||| |||||    
T  23892456 tagtgctacacggaatgagggtagtcatctctctcatccttct 23892414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 670075 - 670199
Alignment:
Q  85 catttagctaagcccaatgagaggt-----ccct-acccgtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc--gtgcta 176  Q
    |||||||||||||||||||||||||     |||| | ||||| ||||||||||| |||||||||||||    ||||| || |||||| ||||  ||||||    
T  670075 catttagctaagcccaatgagaggttcatgccctcagccgttcagctatttaaacgtcatcccatcag----ttaaattattctgaatattctggtgcta 670170  T
Q  177 aacggaatgaggatagtcatccctctcat 205  Q
    |||||||||||| ||||||||||||||||    
T  670171 aacggaatgagggtagtcatccctctcat 670199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 14661318 - 14661462
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctac------ccgtttagctatttaaatgtcatcccatcagacggttaaactactctgaa--cat- 168  Q
    |||||| ||||||||||||| ||||| ||||||||| |      ||||||||||||||||| |||||||||||||||||||||| || | ||||  | |     
T  14661318 gttggaccatttagctaagctcaatgggaggtccctgctctcagccgtttagctatttaaacgtcatcccatcagacggttaaattattgtgaattcttc 14661417  T
Q  169 tcgtgctaaacggaatgaggatagtcatccctctcattcttctga 213  Q
    | || ||| ||||||||||| |||| ||||||||||| |||||||    
T  14661418 tagtactacacggaatgagggtagttatccctctcatccttctga 14661462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 662836 - 663003
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc- 170  Q
    |||||| |||||||||||| ||||||||||||| || |||      ||| ||||||||||| |||||||||    |||||||||||| |||||| | ||     
T  662836 gttggaccatttagctaagtccaatgagaggtcactgccctcagtcgttcagctatttaaacgtcatccca----acggttaaactattctgaatagtct 662931  T
Q  171 -gtgctaaacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaa 241  Q
     |||||||||||||||||| || |||||  |||||| ||| ||||  |||| ||||| ||| ||||||||||    
T  662932 ggtgctaaacggaatgagggtaatcatcaatctcatccttatgataattatgcttcaccaacctaattcaaa 663003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 18341655 - 18341573
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaa 154  Q
    |||||| ||||||||||||| ||||||||||||||| ||       ||||||||||||||| |||||||||||||||||||||    
T  18341655 gttggaccatttagctaagctcaatgagaggtccctgccttcaactgtttagctatttaaacgtcatcccatcagacggttaa 18341573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 17530110 - 17530028
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctac------ccgtttagctatttaaatgtcatcccatcagacggttaa 154  Q
    |||||| ||||||||||| |||||||||||||| || |      |||||||||||||| || |||||||||||||||||||||    
T  17530110 gttggaccatttagctaaacccaatgagaggtcactgcgctcagccgtttagctatttcaacgtcatcccatcagacggttaa 17530028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 450534 - 450498
Alignment:
Q  118 gtttagctatttaaatgtcatcccatcagacggttaa 154  Q
    ||||||||||||||||||||  |||||||||||||||    
T  450534 gtttagctatttaaatgtcactccatcagacggttaa 450498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 243
Target Start/End: Original strand, 44626178 - 44626351
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctacc------cgtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc- 170  Q
    |||||| |||||||||||||||||||||||||| || ||      |||||||||||||||| |||||| |||||||||||||||||| |||||| ||||     
T  44626178 gttggaccatttagctaagcccaatgagaggtctctgccttcagccgtttagctatttaaacgtcatctcatcagacggttaaactattctgaatattcc 44626277  T
Q  171 -gtgctaaacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaaag 243  Q
     |||||||||||||||||| |||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||    
T  44626278 agtgctaaacggaatgagggtagtcatccctctcatccttctgacggttatccttcatcaacctaattcaaaag 44626351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 26005622 - 26005484
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactc---tgaacat 168  Q
    |||||| |||||||||||||||||||||||||||||||||      ||||||||||||||| |||||||||||| |||||||||||| ||   |||||||    
T  26005622 gttggaccatttagctaagcccaatgagaggtccctaccctcagccgtttagctatttaaacgtcatcccatcatacggttaaactattcttatgaacat 26005523  T
Q  169 tc--gtgctaaacggaatgaggatagtcatccctctcat 205  Q
    ||  |||||||||||||||||| |||||||| |||||||    
T  26005522 tctggtgctaaacggaatgagggtagtcatctctctcat 26005484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 32038190 - 32038046
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaac-attc 170  Q
    |||||| ||||||||||||||||||||||||||||| |||      ||||||||||||||| ||||||||||||||||||||||||| |||||||  |||    
T  32038190 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaactattctgaactcttc 32038091  T
Q  171 --gtgctaaacggaatgaggatagtcatccctctcattcttctga 213  Q
      ||| || ||||||||||| |||||||||||||||| |||||||    
T  32038090 tggtgttacacggaatgagggtagtcatccctctcatccttctga 32038046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 38143933 - 38144078
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc--------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacatt 169  Q
    |||||| |||||| | |||||||||||||||||||| |||        |||||||||||||||  ||||||||||| |||||||||||| ||||||||||    
T  38143933 gttggaccatttatccaagcccaatgagaggtccctgccccctcagccgtttagctatttaaacctcatcccatcatacggttaaactattctgaacatt 38144032  T
Q  170 c--gtgctaaacggaatgaggatagtcatccctctcattcttctga 213  Q
    |  |||||| ||||||||| | |||||||||||||||| |||||||    
T  38144033 ccggtgctagacggaatgacggtagtcatccctctcatccttctga 38144078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 17497595 - 17497452
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacat--t 169  Q
    |||||| |||||||| || ||||||||||||||||| |||      ||||||||||||||| ||||||||||||||||||||  ||| | |||||||  |    
T  17497595 gttggaccatttagccaaacccaatgagaggtccctgccctcagtcgtttagctatttaaacgtcatcccatcagacggttattctattttgaacattat 17497496  T
Q  170 cgtgctaaacggaatgaggatagtcatccctctcattcttctga 213  Q
     |||||||||||||||||| ||||||| | |||||| |||||||    
T  17497495 ggtgctaaacggaatgagggtagtcattcttctcatccttctga 17497452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 45266171 - 45266087
Alignment:
Q  117 cgtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc----gtgctaaacggaatgaggatagtcatcc 198  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||    | |||||||||||||||| |||||||||    
T  45266171 cgtttagctatttaaacgtcattccatcagacggttaaactattttgaacattcttctgcgctaaacggaatgagg-tagtcatcc 45266087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 38151028 - 38151081
Alignment:
Q  117 cgtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc 170  Q
    |||||||||||||||| |||| |||||||||||||||||||| | |||||||||    
T  38151028 cgtttagctatttaaacgtcaccccatcagacggttaaactattatgaacattc 38151081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 27146 - 27185
Alignment:
Q  172 tgctaaacggaatgaggatagtcatccctctcattcttct 211  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  27146 tgctaaacgaaatgagggtagtcatccctctcattcttct 27185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 18324949 - 18324988
Alignment:
Q  117 cgtttagctatttaaatgtcatcccatcagacggttaaac 156  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  18324949 cgtttaactatttaaacgtcatcccatcagacggttaaac 18324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 39574550 - 39574711
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaaca--tt 169  Q
    |||||| ||||||||||||||||||||||||||||| |||      ||||||||||||||| |||||||||||||||||||||||||||| |||||   |    
T  39574550 gttggaccatttagctaagcccaatgagaggtccctgcccttagccgtttagctatttaaacgtcatcccatcagacggttaaactactc-gaacaatat 39574648  T
Q  170 cgtgctaaacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatc 232  Q
     ||||||||||||||||||||| ||||||||||||| |||||||  ||||| |||||| ||||    
T  39574649 ggtgctaaacggaatgaggataatcatccctctcatccttctgacagttatccttcatgaatc 39574711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 39581107 - 39581260
Alignment:
Q  86 atttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacat--tcgtgctaa 177  Q
    |||||||||||||||||||||||||||| |||      ||||||||||||||| ||||||| |||| ||||||||||||||| ||||||  | |||||||    
T  39581107 atttagctaagcccaatgagaggtccctgccctcagtcgtttagctatttaaacgtcatccaatcaaacggttaaactactc-gaacattatggtgctaa 39581205  T
Q  178 acggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatc 232  Q
    || ||||||||  ||||||||||||||| ||| |||  ||||| |||||| ||||    
T  39581206 acagaatgagggaagtcatccctctcatccttgtgacagttatccttcatgaatc 39581260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 47858163 - 47858249
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaacta 158  Q
    |||||| ||||||||||||||||||||||||||||| |||      ||||||||||||||| |||||||||||||| ||||||||||    
T  47858163 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagatggttaaacta 47858249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 9758445 - 9758362
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctacc------cgtttagctatttaaatgtcatcccatcagacggttaaa 155  Q
    |||||| |||||||||||||||||||||||||| || ||      | |||||||||||||| ||||||||||||||||||||||    
T  9758445 gttggaacatttagctaagcccaatgagaggtcactgccttcagccatttagctatttaaacgtcatcccatcagacggttaaa 9758362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 9765060 - 9764978
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccct------acccgtttagctatttaaatgtcatcccatcagacggttaaa 155  Q
    |||||| |||||||||||||||||||||||||||||      | ||||||||||||||||| ||||||||||| ||||||||||    
T  9765060 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatc-gacggttaaa 9764978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 41140929 - 41141010
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggtta 153  Q
    |||||| ||||||||||||||  ||||||||||||| |||      ||||||||||||||| |||||||||| |||||||||    
T  41140929 gttggaccatttagctaagcctgatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccattagacggtta 41141010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 24523179 - 24523142
Alignment:
Q  119 tttagctatttaaatgtcatcccatcagacggttaaac 156  Q
    |||||||||||||| |||||||||||||||||||||||    
T  24523179 tttagctatttaaacgtcatcccatcagacggttaaac 24523142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 32280857 - 32280712
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc- 170  Q
    |||||| |||||||||||||||||||||||||||||||||      ||||||||||||||| |||||||||||| |||||||||||| |||||||||||     
T  32280857 gttggaccatttagctaagcccaatgagaggtccctaccctcagccgtttagctatttaaacgtcatcccatcatacggttaaactattctgaacattct 32280758  T
Q  171 ---gtgctaaacggaatgaggatagtcatccctctcattcttctga 213  Q
       ||||||||| ||| |||| |||||||||||||||| |||||||    
T  32280757 ggtgtgctaaacagaacgagggtagtcatccctctcatccttctga 32280712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 3469908 - 3470042
Alignment:
Q  79 ttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc-- 170  Q
    ||||| |||||||| |||||||||||||||||||| |||      ||||| ||||||||| |||||||||||||||||||||||||||||||||||||      
T  3469908 ttggaccatttagcgaagcccaatgagaggtccctgccctcagccgtttaactatttaaacgtcatcccatcagacggttaaactactctgaacattctg 3470007  T
Q  171 gtgctaaacggaatgaggatagtcatccctctcat 205  Q
    |||||||||||||||||| || |||||||||||||    
T  3470008 gtgctaaacggaatgagggtaatcatccctctcat 3470042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 31112435 - 31112574
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattcg 171  Q
    |||||| ||||||||||||||||||||||||||| | |||      ||||| ||||||||| ||||||||||||||||||||||||| |||||||  | |    
T  31112435 gttggaccatttagctaagcccaatgagaggtccatgcccttagccgtttaactatttaaacgtcatcccatcagacggttaaactattctgaac--tgg 31112532  T
Q  172 tgctaaacggaatgaggatagtcatccctctcattcttctga 213  Q
    ||||||||||||||||| |||||||||||||| | |||||||    
T  31112533 tgctaaacggaatgagggtagtcatccctctcctccttctga 31112574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 32285801 - 32285656
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc- 170  Q
    |||||| |||||||||||||| ||||||||||| || |||      ||||| | ||||||| ||||||||||||||||||||||||| |||||||||||     
T  32285801 gttggaccatttagctaagcctaatgagaggtctctgccctcagccgtttaacaatttaaacgtcatcccatcagacggttaaactattctgaacattcc 32285702  T
Q  171 ---gtgctaaacggaatgaggatagtcatccctctcattcttctga 213  Q
       |||||||||||||||||| |||||||| ||||||| |||||||    
T  32285701 ggtgtgctaaacggaatgagggtagtcatctctctcatccttctga 32285656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 45677972 - 45677835
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtca-tcccatcagacggttaaactactctgaac-att 169  Q
    |||||| |||||| |||||||||||||||||||||| |||      ||||||||||||||| |||| ||||||||||||||||||||| |||||||  ||    
T  45677972 gttggaccatttacctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcaatcccatcagacggttaaactattctgaactctt 45677873  T
Q  170 c--gtgctaaacggaatgaggatagtcatccctctcat 205  Q
    |  |||||| ||||||||||| ||||||||||||||||    
T  45677872 ctggtgctacacggaatgagggtagtcatccctctcat 45677835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 19240598 - 19240464
Alignment:
Q  79 ttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc-- 170  Q
    ||||| |||||||||||||| |||||||||||||| |||      ||||| ||||||||| || |||||||||||||||||||||| | |||| ||||      
T  19240598 ttggaccatttagctaagcctaatgagaggtccctgccctcatccgtttaactatttaaacgttatcccatcagacggttaaactattatgaatattctg 19240499  T
Q  171 gtgctaaacggaatgaggatagtcatccctctcat 205  Q
    |||||||| ||||||||| |||||||| |||||||    
T  19240498 gtgctaaatggaatgagggtagtcatctctctcat 19240464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 39032828 - 39032685
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggtt-aaact-------actctg 163  Q
    |||||| ||||||||||||||||||||||||||||| |||      ||||||||||||||| ||||||||||||||||||| |||||       | ||||    
T  39032828 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaaactattctgaattctg 39032729  T
Q  164 aacattc--gtgctaaacggaatgaggatagtcatccctctcat 205  Q
    |||||||  |||||||| ||||||||| ||||||||||||||||    
T  39032728 aacattctggtgctaaagggaatgagggtagtcatccctctcat 39032685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 29961006 - 29960875
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggtt-aaactactctgaacattc 170  Q
    |||||| ||||||||||| |||||||||||||| || |||      ||||||||||||||| |||||||||||||| |||| |||| | |||||||||||    
T  29961006 gttggaccatttagctaaacccaatgagaggtctctgccctcagccgtttagctatttaaacgtcatcccatcagatggttaaaaccattctgaacattc 29960907  T
Q  171 --gtgctaaacggaatgaggatagtcatccct 200  Q
       | ||| ||||||||||| |||||||||||    
T  29960906 tgatactagacggaatgagggtagtcatccct 29960875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 30010211 - 30010080
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggtt-aaactactctgaacattc 170  Q
    |||||| ||||||||||| |||||||||||||| || |||      ||||||||||||||| |||||||||||||| |||| |||| | |||||||||||    
T  30010211 gttggaccatttagctaaacccaatgagaggtctctgccctcagccgtttagctatttaaacgtcatcccatcagatggttaaaaccattctgaacattc 30010112  T
Q  171 --gtgctaaacggaatgaggatagtcatccct 200  Q
       | ||| ||||||||||| |||||||||||    
T  30010111 tgatactagacggaatgagggtagtcatccct 30010080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 39039840 - 39039758
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctacc-----cgtttagctatttaaatgtcatcccatcagacggttaaa 155  Q
    |||||| |||||||||||||||||||||||||||   ||     |||||||||||||||| |||||| |||||||||||||||    
T  39039840 gttggaccatttagctaagcccaatgagaggtcctgccctcagtcgtttagctatttaaacgtcatcgcatcagacggttaaa 39039758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 38445746 - 38445794
Alignment:
Q  117 cgtttagctatttaaatgtcatcccatcagacggttaaactactctgaa 165  Q
    |||||||||||||||| |||||| |||||||||||||||||| ||||||    
T  38445746 cgtttagctatttaaacgtcatctcatcagacggttaaactattctgaa 38445794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 39350958 - 39350997
Alignment:
Q  116 ccgtttagctatttaaatgtcatcccatcagacggttaaa 155  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  39350958 ccgtttagctatttaaacgtcatcccatcagacggttaaa 39350997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 46611872 - 46611957
Alignment:
Q  77 agttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaac 156  Q
    ||||||| |||||||||||||||||| ||||||| || |||      |||||| |||||||| ||||| |||||||||||||||||    
T  46611872 agttggaccatttagctaagcccaataagaggtcactgccctcagccgtttagttatttaaacgtcatgccatcagacggttaaac 46611957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 50158274 - 50158324
Alignment:
Q  116 ccgtttagctatttaaatgtcatcccatcagacggttaaactactctgaac 166  Q
    |||||| ||||||||||||| ||| |||||||||||||||||| |||||||    
T  50158274 ccgtttggctatttaaatgtgatcacatcagacggttaaactattctgaac 50158324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 11458194 - 11458269
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaa 154  Q
    |||||| |||||||||||||||||||| | |||      ||||||||||||||| ||||| |||||||||||||||    
T  11458194 catttaactaagcccaatgagaggtccatgcccttagccgtttagctatttaaacgtcataccatcagacggttaa 11458269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 41273064 - 41273104
Alignment:
Q  116 ccgtttagctatttaaatgtcatcccatcagacggttaaac 156  Q
    ||||||| ||||||||| |||||||||| ||||||||||||    
T  41273064 ccgtttatctatttaaacgtcatcccattagacggttaaac 41273104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 85 - 229
Target Start/End: Original strand, 27101564 - 27101716
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc--gtgcta 176  Q
    ||||||| |||||||||||||| |||||| |||      |||||||||||||||  | ||||||||||||||||||||||||||||||||||  ||| ||    
T  27101564 catttagttaagcccaatgagatgtccctgccctcagtcgtttagctatttaaactttatcccatcagacggttaaactactctgaacattctggtgtta 27101663  T
Q  177 aacggaatgaggatagtcatccctctcattcttctgatggttattcttcatca 229  Q
    |||||||||||| |||||||||||||||| ||||||||  |||| ||||||||    
T  27101664 aacggaatgagggtagtcatccctctcatccttctgataattatccttcatca 27101716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 85 - 229
Target Start/End: Original strand, 27143386 - 27143538
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc--gtgcta 176  Q
    ||||||| |||||||||||||| |||||| |||      |||||||||||||||  | ||||||||||||||||||||||||||||||||||  ||| ||    
T  27143386 catttagttaagcccaatgagatgtccctgccctcagtcgtttagctatttaaactttatcccatcagacggttaaactactctgaacattctggtgtta 27143485  T
Q  177 aacggaatgaggatagtcatccctctcattcttctgatggttattcttcatca 229  Q
    |||||||||||| |||||||||||||||| ||||||||  |||| ||||||||    
T  27143486 aacggaatgagggtagtcatccctctcatccttctgataattatccttcatca 27143538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 9972836 - 9972972
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaacta---ctctgaacattc--gtg 173  Q
    ||||||||||||||||||||||||||||| |||      ||||||||||||||| || ||||||||||||||||||||||    |||||||||||  |||    
T  9972836 catttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgttatcccatcagacggttaaactattcttctgaacattctggtg 9972935  T
Q  174 ctaaacggaatgaggatagtcatccctctcattcttc 210  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  9972936 ctaaacggaatgagggtagtcatccctctcatccttc 9972972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 23848646 - 23848518
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc--gtgcta 176  Q
    ||||||||||||||||||||||||||||| |||      ||||||||||||||| |||||||||||||| |||||||||| |||||||||||  ||||||    
T  23848646 catttagctaagcccaatgagaggtccctgcccttagccgtttagctatttaaacgtcatcccatcagatggttaaactattctgaacattctggtgcta 23848547  T
Q  177 aacggaatgaggatagtcatccctctcat 205  Q
    || ||||||||   |||||||||||||||    
T  23848546 aagggaatgagcgcagtcatccctctcat 23848518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 32932353 - 32932257
Alignment:
Q  117 cgtttagctatttaaatgtcatcccatcagacggttaaactactctgaaca--ttcgtgctaaacggaatgaggatagtcatccctctcattcttct 211  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| ||||||  || |||||||| ||||||||| ||||||||||||||||||||||    
T  32932353 cgtttaactatttaaacgtcatcccatcagacggttaaactactatgaacattttggtgctaaatggaatgagggtagtcatccctctcattcttct 32932257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 18338175 - 18338305
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc-----gtg 173  Q
    ||||||||||||||||||||||||||||| |||      ||||||||||||||| ||||||||||||||||||||||| | |||||| ||||     |||    
T  18338175 catttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaaccattctgaa-attcttctggtg 18338273  T
Q  174 ctaaacggaatgaggatagtcatccctctcat 205  Q
    ||||||||||||||| ||||||||||||||||    
T  18338274 ctaaacggaatgagggtagtcatccctctcat 18338305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 7553500 - 7553362
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacatt-- 169  Q
    |||||| ||||||||||| |||| ||||| |||||| |||      |||||| ||||||||  |||||||||||||||||||||||| ||||||||||      
T  7553500 gttggaccatttagctaaacccagtgagaagtccctgccctcggccgtttagttatttaaacatcatcccatcagacggttaaactattctgaacatttt 7553401  T
Q  170 ---cgtgctaaacggaatgaggatagtcatccctctcat 205  Q
        |||||||||||||||||| ||||||||||||||||    
T  7553400 tcaggtgctaaacggaatgagggtagtcatccctctcat 7553362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 19543516 - 19543599
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaa 155  Q
    |||||| |||||| ||||||| |||||||||||||| |||      ||||||||||||||| ||||||| ||||||||||||||    
T  19543516 gttggaccatttaactaagccgaatgagaggtccctgcccttagccgtttagctatttaaacgtcatcctatcagacggttaaa 19543599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 22958160 - 22958071
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggtt-aaactactctgaaca 167  Q
    ||||||| |||||||||||||| |||||| |||      | ||||||||||||| |||||||||||||| |||| |||||| ||||||||    
T  22958160 catttagttaagcccaatgagaagtccctgccctcagccgattagctatttaaacgtcatcccatcagatggttaaaactattctgaaca 22958071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 23830232 - 23830321
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggtt-aaactactctgaaca 167  Q
    ||||||| |||||||||||||| |||||| |||      | ||||||||||||| |||||||||||||| |||| |||||| ||||||||    
T  23830232 catttagttaagcccaatgagaagtccctgccctcagccgattagctatttaaacgtcatcccatcagatggttaaaactattctgaaca 23830321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 26451003 - 26450833
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattcg 171  Q
    |||||| ||||||||||||||||||||||||||||| |||      ||||||||||||||| ||||||||||||||||||||| | | |||||||| ||     
T  26451003 gttggaccatttagctaagcccaatgagaggtcccttccctcagccgtttagctatttaaacgtcatcccatcagacggttaagc-attctgaacactct 26450905  T
Q  172 --tgctaaacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaa 241  Q
      ||||||||||||||||| ||||||||||||| || ||| |||  ||||| ||||||||| ||||||||||    
T  26450904 actgctaaacggaatgagggtagtcatccctcttatccttttgacagttatccttcatcaacctaattcaaa 26450833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 267820 - 267696
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc--gtgcta 176  Q
    ||||||||||||||||||||||||||||| |||      ||||||||||||||| |||||||||||| |||||||||||| |||||||||||  ||||||    
T  267820 catttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcaaacggttaaactattctgaacattctggtgcta 267721  T
Q  177 aacggaatgaggatagtcatccctc 201  Q
    |||||||||||| ||||||| ||||    
T  267720 aacggaatgagggtagtcattcctc 267696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 32517173 - 32517319
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactct---gaacat 168  Q
    |||||| ||||||||||||||||||||||||||| | |||      ||||||||||||||| |||||||||| ||||||||||| || |||   ||||||    
T  32517173 gttggaccatttagctaagcccaatgagaggtccatgccctcagccgtttagctatttaaacgtcatcccattagacggttaaagtattcttctgaacat 32517272  T
Q  169 tc--gtgctaaacggaatgaggatagtcatccctctcattcttctga 213  Q
    ||  |||||||||||||||||| |||||||||||||||| |||||||    
T  32517273 tctggtgctaaacggaatgagggtagtcatccctctcatccttctga 32517319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 48853655 - 48853799
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaa--cat- 168  Q
    |||||| ||||||||||||||||||||||||||||| |||      ||||| ||||||||| ||||||||||||||||||||||||| | ||||  | |     
T  48853655 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttaactatttaaacgtcatcccatcagacggttaaactattgtgaattcttc 48853754  T
Q  169 tcgtgctaaacggaatgaggatagtcatccctctcattcttctga 213  Q
    | |||||| ||||||||||| |||||||||||||||| |||||||    
T  48853755 tggtgctacacggaatgagggtagtcatccctctcatccttctga 48853799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 29148798 - 29148714
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtcc----ct-acccgtttagctatttaaatgtcatcccatcagacggttaaact 157  Q
    |||||| |||||||||||| ||||||||||||||    || | ||||||||||||||||| |||||||||||||||| |||||||    
T  29148798 gttggaacatttagctaagtccaatgagaggtcctgccctcagccgtttagctatttaaacgtcatcccatcagacgtttaaact 29148714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 40771313 - 40771349
Alignment:
Q  118 gtttagctatttaaatgtcatcccatcagacggttaa 154  Q
    ||||||||||||||| |||||||||||||||||||||    
T  40771313 gtttagctatttaaacgtcatcccatcagacggttaa 40771349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 22729888 - 22730023
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc- 170  Q
    |||||| |||||||||||| |||||||||||||||| |||      ||||||||||||||| ||||||||||| || |||||||||| |||||||||||     
T  22729888 gttggaccatttagctaagtccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcggaaggttaaactattctgaacattct 22729987  T
Q  171 -gtgctaaacggaatgaggatagtcatccctctcat 205  Q
     |||||||||||||||||| || |||||||||||||    
T  22729988 ggtgctaaacggaatgagggtaatcatccctctcat 22730023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 35941202 - 35941063
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattcg 171  Q
    |||||| ||||| ||||||||||||||||||||||| |||      ||||||||||||||| ||||| | ||||||||||||||||| |||||||||||     
T  35941202 gttggaccatttcgctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcattc-atcagacggttaaactattctgaacattct 35941104  T
Q  172 --tgctaaacggaatgaggatagtcatccctctcattcttc 210  Q
      ||||||||||||||||| ||||||||||| |||| ||||    
T  35941103 gatgctaaacggaatgagggtagtcatccctatcatccttc 35941063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 11339880 - 11340054
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattcg 171  Q
    |||||| ||||||||||| ||||||||||||||||| |||      |||||||||||||||  ||||| ||||||| |||||||||| |   |||| ||     
T  11339880 gttggaccatttagctaaacccaatgagaggtccctgccctcagccgtttagctatttaaacatcatcgcatcagaaggttaaactattgcaaacactct 11339979  T
Q  172 --tgctaaacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaaagta 245  Q
      ||||||||||||||||| |||||||||||||||| ||||| || ||||| ||||||||| |||||| |||||||    
T  11339980 gctgctaaacggaatgagg-tagtcatccctctcatccttcttatagttatccttcatcaacctaatttaaaagta 11340054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 43097500 - 43097585
Alignment:
Q  77 agttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaac 156  Q
    ||||||| |||||||||||||||||||| |||||||| |||      |||||||||||||||||||||||||||||||||||||||    
T  43097500 agttggaccatttagctaagcccaatgaaaggtccctgccctcagccgtttagctatttaaatgtcatcccatcagacggttaaac 43097585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 36950216 - 36950147
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccct------acccgtttagctatttaaatgtcatccc 141  Q
    |||||| |||||||||||||||||||||||||||||      | ||||||||||||||||| ||||||||    
T  36950216 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatccc 36950147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 10491257 - 10491330
Alignment:
Q  116 ccgtttagctatttaaatgtcatcccatcagacggttaaactactctgaaca--ttcgtgctaaacggaatgagg 188  Q
    |||||||||||||||||  |||||||||||||||||||| | | ||||||||  ||  |||||||||||||||||    
T  10491257 ccgtttagctatttaaacatcatcccatcagacggttaatc-attctgaacattttgctgctaaacggaatgagg 10491330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 36950123 - 36950068
Alignment:
Q  160 tctgaacattc--gtgctaaacggaatgaggatagtcatccctctcattcttctga 213  Q
    |||||||||||  |||||| ||| ||||||| |||||||||||||||| |||||||    
T  36950123 tctgaacattctggtgctagacgaaatgagggtagtcatccctctcatccttctga 36950068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 42567731 - 42567597
Alignment:
Q  77 agttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc 170  Q
    ||||||| ||||||||||||||||||||||||||||| |||      ||||| ||||||||| ||||||||||||||||||||||||| | |||||||||    
T  42567731 agttggaccatttagctaagcccaatgagaggtccctgccctcagctgtttaactatttaaacgtcatcccatcagacggttaaactattatgaacattc 42567632  T
Q  171 --gtgctaaacggaatgaggatagtcatccctctca 204  Q
      ||||||||| |||||||| |||||||||||||||    
T  42567631 tggtgctaaac-gaatgagggtagtcatccctctca 42567597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 24423289 - 24423153
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggtt-aaactactctgaacattc 170  Q
    |||||| |||||| |||||||||||||||||||||| |||      |||||||||||||||||||||| |||||||||||| |||||| |||||||||||    
T  24423289 gttggaccatttaactaagcccaatgagaggtcccttccctcagtcgtttagctatttaaatgtcatctcatcagacggttaaaactattctgaacattc 24423190  T
Q  171 --gtgctaaacggaatgaggatagtcatccctctcat 205  Q
      |||||||||||||||||| |||| || ||||||||    
T  24423189 tggtgctaaacggaatgagggtagttattcctctcat 24423153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 35905066 - 35904976
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacatt 169  Q
    |||||||||||||||||||||||||| || |||      ||||||||||||||| |||||| |||||||| ||||||||| ||||||||||    
T  35905066 catttagctaagcccaatgagaggtctctgcccttagccgtttagctatttaaacgtcatctcatcagacagttaaactattctgaacatt 35904976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 6262260 - 6262343
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggt------ccctacccgtttagctatttaaatgtcatcccatcagacggttaaa 155  Q
    |||||| |||||||||||||||||||||||||      || || ||||||||||||||||| || |||||||||||||||||||    
T  6262260 gttggaccatttagctaagcccaatgagaggtgtctgcccttagccgtttagctatttaaacgttatcccatcagacggttaaa 6262343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 33366813 - 33366885
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccct------acccgtttagctatttaaatgtcatcccatc 144  Q
    |||||| |||||||||||||||||||||||||||||      | ||||||||||||||||| |||||||||||    
T  33366813 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatc 33366885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 36048945 - 36049027
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccct------acccgtttagctatttaaatgtcatcccatcagacggttaa 154  Q
    |||||| |||||||||||||||||||||||||| ||      | ||||||||||||||||| |||||||||||| ||| ||||    
T  36048945 gttggaccatttagctaagcccaatgagaggtctctgccctcagccgtttagctatttaaacgtcatcccatcatacgattaa 36049027  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 13393761 - 13393676
Alignment:
Q  77 agttggatcatttagctaagcccaatgagaggtccct------acccgtttagctatttaaatgtcatcccatcagacggttaaac 156  Q
    ||||||| ||||||||||||||||||||||||||| |      | || ||||||||||||||  ||||| ||||||||||||||||    
T  13393761 agttggaccatttagctaagcccaatgagaggtcctttccctcagccatttagctatttaaacttcatctcatcagacggttaaac 13393676  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 13396900 - 13396815
Alignment:
Q  77 agttggatcatttagctaagcccaatgagaggtccct------acccgtttagctatttaaatgtcatcccatcagacggttaaac 156  Q
    ||||||| ||||||||||||||||||||||||||| |      | || ||||||||||||||  ||||| ||||||||||||||||    
T  13396900 agttggaccatttagctaagcccaatgagaggtcctttccctcagccatttagctatttaaacttcatctcatcagacggttaaac 13396815  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 54256359 - 54256396
Alignment:
Q  118 gtttagctatttaaatgtcatcccatcagacggttaaa 155  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  54256359 gtttagctatttaaacgtcatcccatcagacggttaaa 54256396  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 44160759 - 44160724
Alignment:
Q  116 ccgtttagctatttaaatgtcatcccatcagacggt 151  Q
    ||||||||||||||||| ||||||||||||||||||    
T  44160759 ccgtttagctatttaaacgtcatcccatcagacggt 44160724  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 33361763 - 33361805
Alignment:
Q  171 gtgctaaacggaatgaggatagtcatccctctcattcttctga 213  Q
    |||||| ||||||||||| |||||||||||||||| |||||||    
T  33361763 gtgctacacggaatgagggtagtcatccctctcatccttctga 33361805  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 2229029 - 2229101
Alignment:
Q  177 aacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaaagtataca 249  Q
    |||||||||||| |||| |||||||||||  |   || |||||||||||||||| |||||| ||| |||||||    
T  2229029 aacggaatgagggtagttatccctctcatattgtcgacggttattcttcatcaacctaattgaaaggtataca 2229101  T

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Target: scaffold0502 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 8999 - 9129
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc-----gtg 173  Q
    ||||||||||||||||||||||||||||| |||      ||||||||||||||| ||||||||||||||||||||||| | |||||| ||||     |||    
T  8999 catttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaaccattctgaa-attcttctggtg 9097  T
Q  174 ctaaacggaatgaggatagtcatccctctcat 205  Q
    ||||||||||||||| ||||||||||||||||    
T  9098 ctaaacggaatgagggtagtcatccctctcat 9129  T

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Target: scaffold0502; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 4299 - 4429
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc-----gtg 173  Q
    ||||||||||||||||||||||||||||| |||      ||| ||||||||||| ||||||||||||||||||||||| | |||||| ||||     |||    
T  4299 catttagctaagcccaatgagaggtccctgccctcaaccgttcagctatttaaacgtcatcccatcagacggttaaaccattctgaa-attcttctggtg 4397  T
Q  174 ctaaacggaatgaggatagtcatccctctcat 205  Q
    ||||||||||||||| ||||||||||||||||    
T  4398 ctaaacggaatgagggtagtcatccctctcat 4429  T

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Target: scaffold0040 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 60354 - 60500
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaac-attc 170  Q
    |||||| ||||||||||||||||||||||||||||| |||      ||||||||||||||| ||||||||||||||||||||||||| |||||||  |||    
T  60354 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaactattctgaactcttc 60453  T
Q  171 --gtgct--aaacggaatgaggatagtcatccctctcattcttctga 213  Q
      |||||  | ||||||||||| || ||||||||||||| |||||||    
T  60454 tggtgctacacacggaatgagggtactcatccctctcatccttctga 60500  T

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Target: scaffold0040; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 67830 - 67976
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaactactctgaac-attc 170  Q
    |||||| ||||||||||||||||||||||||||||| |||      ||||||||||||||| ||||||||||||||||||||||||| |||||||  |||    
T  67830 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaactattctgaactcttc 67929  T
Q  171 --gtgct--aaacggaatgaggatagtcatccctctcattcttctga 213  Q
      |||||  | ||||||||||| || ||||||||||||| |||||||    
T  67930 tggtgctacacacggaatgagggtactcatccctctcatccttctga 67976  T

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Target: scaffold1634 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1634
Description:

Target: scaffold1634; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 112 - 26
Alignment:
Q  78 gttggatcatttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaaacta 158  Q
    |||||| |||||||||||||| |||||||||||||| |||      ||||| ||||||||| |||||||||||||||| ||||||||    
T  112 gttggaccatttagctaagccaaatgagaggtccctgccctcagccgtttaactatttaaacgtcatcccatcagacgattaaacta 26  T

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Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 30145 - 30220
Alignment:
Q  85 catttagctaagcccaatgagaggtccctacc------cgtttagctatttaaatgtcatcccatcagacggttaa 154  Q
    |||||||||||| ||||||||||||| |||||      |||||||||||||||| ||||| |||||||||||||||    
T  30145 catttagctaagtccaatgagaggtctctaccttcagccgtttagctatttaaacgtcattccatcagacggttaa 30220  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 134625 - 134550
Alignment:
Q  85 catttagctaagcccaatgagaggtccctaccc------gtttagctatttaaatgtcatcccatcagacggttaa 154  Q
    ||||||| |||||||||||||||||||||| ||      ||||||||||||||| ||||| |||||||||||||||    
T  134625 catttagataagcccaatgagaggtccctagcctcagtcgtttagctatttaaacgtcattccatcagacggttaa 134550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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