View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_70 (Length: 296)
Name: NF1250_low_70
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 53229626 - 53229787
Alignment:
| Q |
28 |
cagttatatagtgtaaattgtctctccatgtaaatgaaatgaactcgggtcaatatatagacataacttgaagtttgttgtatttttcaggtccaagctg |
127 |
Q |
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| T |
53229626 |
cagttatatagtgtaaattgtctctccatgtaaatgaaatgaactcgggtcaatatatagacataacttgaagtttgttgtatttttcaggtccaagctg |
53229725 |
T |
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| Q |
128 |
tgtataatgctatgaggaggggtgacatgcaccgtttccaatcgataaattcatattcctgg |
189 |
Q |
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| T |
53229726 |
tgtataatgctatgaggaggggtgacatgcaccgtttccaatcgataaattgatattcctgg |
53229787 |
T |
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 53229778 - 53229852
Alignment:
| Q |
213 |
atattcctggtttcttcattcttaaatttaagnnnnnnntcacagaatgaattatcatgtttatataagtataat |
287 |
Q |
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| T |
53229778 |
atattcctggtttcttcattcttaaatttaagaaaaaaatcacataatgaattatcatgtttatataagcataat |
53229852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 38536374 - 38536331
Alignment:
| Q |
111 |
ttttcaggtccaagctgtgtataatgctatgaggaggggtgaca |
154 |
Q |
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| T |
38536374 |
ttttcaggtccaagctgtatataatgctatgaggagggatgaca |
38536331 |
T |
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