View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_78 (Length: 281)
Name: NF1250_low_78
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 47074482 - 47074666
Alignment:
| Q |
39 |
gatatgaaattagtactattattcaccttagtcaatagaaaaatagctacttaccagtgaaatctaccgcaaccatgaagtttagttcaaatccactaga |
138 |
Q |
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| T |
47074482 |
gatatgaaattagtactattattcaccttagtcaatagaaaaatagctacttaccagtgaaatctaccgcaaccatgaagtttagttcaaatccactaga |
47074581 |
T |
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| Q |
139 |
tacgtagtcaataaagctgaattgttccttttcacaatattgatccacaaagagttgacccttcagaacctataatgaagaaatt |
223 |
Q |
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| T |
47074582 |
tacgtagtcaataaagctgaattgttccttttcacaatattgatccacaaagagttgacccttcagaacctataatgaagaaatt |
47074666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 47056557 - 47056689
Alignment:
| Q |
90 |
taccagtgaaatctaccgcaaccatgaagtttagttcaaatccactagatacgtagtcaataaagctgaattgttccttttcacaatattgatccacaaa |
189 |
Q |
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| T |
47056557 |
taccagtgaaatctattgccaccatgaagttcagttcaaatccactagatatgtaatcaataaagctgaattgttccttttctcaatattggtccacaaa |
47056656 |
T |
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| Q |
190 |
gagttgacccttcagaacctataatgaagaaat |
222 |
Q |
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| T |
47056657 |
gagttgacccttcagaacctataatgaagaaat |
47056689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 18230919 - 18230736
Alignment:
| Q |
40 |
atatgaaattagtactattattcaccttagtcaatagaaaaatagctacttaccagtgaaatctaccgcaaccatgaagtttagttcaaatccactagat |
139 |
Q |
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|||||||||||||||||||||| |||||| | ||||||| | | | ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18230919 |
atatgaaattagtactattattgaccttaattaatagaacagttgacactaaccagtgaaatctaccgcaaccaagaagtttagttcaaatccactagat |
18230820 |
T |
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| Q |
140 |
acgtagtcaataaagctgaattgttccttttcacaatattgatccacaaagagttgacccttcagaacctataatgaagaaatt |
223 |
Q |
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| T |
18230819 |
atgtagtcaataaagctgaattgttccttttcacaatattgatccacaaagagttgacccttcagaacctataatgaagaaatt |
18230736 |
T |
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