View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_79 (Length: 280)
Name: NF1250_low_79
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 53 - 223
Target Start/End: Complemental strand, 31520231 - 31520061
Alignment:
| Q |
53 |
tattttggtgcttctatctcacacatatatcactcatggcatatgttgattaccatgaaaattccattgctacccccacctctaccaataccctaaagct |
152 |
Q |
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| T |
31520231 |
tattttggtgcttctatctcacacatatatcactcatggcatatgttgattaccatgaaaattccattgctacccccacctctaccaataccctaaagct |
31520132 |
T |
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| Q |
153 |
ttttggcatcaacatccaagaagcttgtttgaaccaatctccaacacaatcagaatcatctgagcctttga |
223 |
Q |
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| T |
31520131 |
ttttggcatcaacatccaagaagcttgtttgaaccaatctccaacacaatcagaatcatctgagcctttga |
31520061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 31520280 - 31520249
Alignment:
| Q |
1 |
atataaacccttcacatacatattttgtagct |
32 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31520280 |
atataaacccttcacatacatattttgtagct |
31520249 |
T |
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