View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_8 (Length: 603)
Name: NF1250_low_8
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 3 - 576
Target Start/End: Complemental strand, 40669380 - 40668807
Alignment:
| Q |
3 |
agcagcaccacagaactcacagccgaatggaacataaaactcttgctttcaaaccctaacggccatcttcgaatttcctaccaccacgatgcatttcatg |
102 |
Q |
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| T |
40669380 |
agcaacaccacaaaactctcagccgaatggaacataaaactcttgctttcaaaccctaacggccatcttcgaatttcctaccaccacgatgcatttcatg |
40669281 |
T |
|
| Q |
103 |
gcaagatattttacaggaatcagcaaggacgtcccgacaacgatattattcttgaaacctcaactttgcaatcatttttcaatggcaacaacatggtcca |
202 |
Q |
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| T |
40669280 |
gcaagatattttacaggaatcagcaaggacgtcccgacaacgatattattcttgaaacctcaactttgcaatcatttttcaatggcaacaacatggtcca |
40669181 |
T |
|
| Q |
203 |
gattaaattgaacgttgacacgtacgtgggctcctacatggcggagaaaattgatctgagccgtcgcaaccatggaatggttgaatttggactaattgtt |
302 |
Q |
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| T |
40669180 |
gattaaattgaacgttgacacgtacgtgggctcctacatggcggagaaaattgatttgagccgtcgcaaccatggaatggttgaatttggactaattgtt |
40669081 |
T |
|
| Q |
303 |
tcgacttcgatgagattcaaaagtgatttcttcgtcttttcgggctccaagtcttcaaatgtttgctatccgctcaggtttgaaatttctcaaaatgtct |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40669080 |
tcgacttcgatgagattcaaaagtgatttcttcgtcttttcaggctccaagtcttcaaatgtttgctatccgctcaggtttgaaatttctcaaaatgtct |
40668981 |
T |
|
| Q |
403 |
acaatacaacccctggtattctattgcaaggtgtaacctgcgacttggtttatgattatgtataattgagatggagtatgtaatcccacttagttatagg |
502 |
Q |
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| T |
40668980 |
acaatacaacccctggtattctattgcaaggtgtaacctgcgacttgggttatgattatgtataattgagatggagtatgtaatcccacttagttatagg |
40668881 |
T |
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| Q |
503 |
aatgtgattgcatttagctagtgatctcaatttataaaatattaattaatatttacatttacatgtttaagatg |
576 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40668880 |
aatgtgattgcatttagctagtgatctcaatttataaaatattaattaatatttacatttacatgtttaagatg |
40668807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 40663038 - 40662932
Alignment:
| Q |
11 |
cacagaactcacagccgaatggaacataaaactcttgctttcaaaccctaacggccatcttcgaatttcctaccaccacgatgcatttcatggcaagata |
110 |
Q |
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|||| |||||||||| |||||||| || | ||||| || |||||||||||| |||| | ||||| || |||||||||||| ||||| || ||||||| |
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| T |
40663038 |
cacaaaactcacagctgaatggaaaattacactctccctatcaaaccctaactaccatttgcgaatctcataccaccacgattcatttgatcccaagata |
40662939 |
T |
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| Q |
111 |
ttttaca |
117 |
Q |
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||||||| |
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| T |
40662938 |
ttttaca |
40662932 |
T |
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