View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_80 (Length: 280)
Name: NF1250_low_80
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_80 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 45 - 245
Target Start/End: Complemental strand, 22841885 - 22841685
Alignment:
| Q |
45 |
agaaagattgctcaacattcaacaaatatgtcaaaaactgtattttatagctgtcaatcccgagtaaattgcctcctgatttacctccatctccgggcaa |
144 |
Q |
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| T |
22841885 |
agaaagattgctcaacattcaacaaatatgtcaaaaactgtattttatagctgtcaatcccgagtaaattgcctcctgatttacctccatctccgggcaa |
22841786 |
T |
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| Q |
145 |
cttgccagcacatatgaccgatggaacaggctgacttgaaatggcctatgatttttccatgaagaaaaatatgaaattttgattcaaaaccagtattatc |
244 |
Q |
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| T |
22841785 |
cttgccagcacatatgaccgacggaacaggctgacttgaaatggcctatgatttttccatgaagaaaaatatgaaattttgattcaaaaccaatattatc |
22841686 |
T |
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| Q |
245 |
t |
245 |
Q |
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| T |
22841685 |
t |
22841685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 22877406 - 22877232
Alignment:
| Q |
63 |
tcaacaaatatgtcaaaaactgtattttatagctgtcaatcccgagtaaattgcctcctgatttacctccatctccgggcaacttgccagcacatatgac |
162 |
Q |
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| T |
22877406 |
tcaacaaatatgtcaaaaactgtattttatagctgtcaatcccaagtaaattgcctcgtgatttacctccaattccccgcaacttgccagcacatatgac |
22877307 |
T |
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| Q |
163 |
cgatggaacaggctgacttgaaatggcctat-gatttttccatgaagaaaaatatgaaattttgattcaaaacca |
236 |
Q |
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| T |
22877306 |
cgatggaacaggctgacttgaaatggccaatggatttttccatgaagaaaaatatgaaattttgattcaaaacca |
22877232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 22895163 - 22894993
Alignment:
| Q |
66 |
acaaatatgtcaaaaactgtattttatagctgtcaatcccgagtaaattgcctcctgatttacctccatctccgggcaacttgccagcacatatgaccga |
165 |
Q |
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| T |
22895163 |
acaaatatgtcaaaaactgaattttatagttgtcaatcctgagtaaattgcctcgtgatttacctccatctccctgcaacttgccagcacatatgaccaa |
22895064 |
T |
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| Q |
166 |
tggaacaggctgacttgaaatggcctatgatttttccatgaagaaaaatatgaaattttgattcaaaacca |
236 |
Q |
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| T |
22895063 |
tgaaacaggctgactttaattggcctacgatttttccatgaagaaaaatatgaaattttgattcaaaacca |
22894993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 22886914 - 22886820
Alignment:
| Q |
78 |
aaaactgtattttatagctgtcaatcccgagtaaattgcctcctgatttacctccatctccgggcaacttgccagcacatatgaccgatggaaca |
172 |
Q |
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| T |
22886914 |
aaaattgtattttatagctgtcaatcacgagtaaattacccggtgatttgcctccatctccctgcaatttgccaacacatgtgaccgatggaaca |
22886820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 22810722 - 22810681
Alignment:
| Q |
195 |
atttttccatgaagaaaaatatgaaattttgattcaaaacca |
236 |
Q |
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| T |
22810722 |
atttttccataaagaaaaatatgaaattttgagtcaaaacca |
22810681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 21149648 - 21149678
Alignment:
| Q |
192 |
atgatttttccatgaagaaaaatatgaaatt |
222 |
Q |
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| T |
21149648 |
atgatttttccatgaagaaaaatatgaaatt |
21149678 |
T |
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